Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010368

Physical Location & Seq

Genomic Coordinates Forward (+)

6406495 .. 6407959

Gene Structure 1465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G10330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGAGCAACAGAAGAAGAACCGGAGACGATGACAAAGGATTGCTCTGGAAACTTCCCCAAGTTAGGATCAGAGACATTGGAAAAGTTGGTCCAGCTTTTGGACTCGGTGTCGGTTGCGGATTTGGTTTCGGCGCCGGTCTTATCGGAGGTGTAGGATTCGGACCAGGAGTTCCTGGATTACAATTTGGTCTTGGATTTGGAGCTGGTTGTGGAATTGGTGTAGGTTTTGGCTATGGTGTTGGAAGAGGAGCTGCTTATGATCACTCTCGTTCTTATTACAACGTTGGAAAACCATCTCTGAATGAAGTTGATTCACTGATTGATGAACTTGTTGTTAGCACGAAGAAGCTTGTGAAAGCTACTACAAATGAAATCGACAAGTGGTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

13.54

Weight (kDa)

9.39

Isoelectric Point (pI)

27.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10330
fragaria_vesca	FvH4_2g00130
malus_domestica	MD00G1103300.v1.1 MD02G1202800.v1.1 MD05G1000400.v1.1 MD11G1234100.v1.1
prunus_persica	Prupe.8G001100_v2.0.a1
pyrus_communis	pycom10g00020 pycom215g00060
rosa_chinensis	RchiOBHm_Chr6g0249391
rosa_laevigata	RLG00000015584 RLG00000026303
rosa_multiflora	Rmu_sc0000278.1_g000004 Rmu_sc0018750.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217770
rosa_rugosa	Rorug05G0491900
rosa_samantha	Rh6AG001700 Rh6BG008400 Rh6CG000700 Rh6DG000800
rosa_wichuraiana	Rw6G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	98
AciI	CCGC	1 cut(s)	117
AclI	AACGTT	1 cut(s)	282
AclWI	GGATC	1 cut(s)	74
AcyI	GRCGYC	1 cut(s)	132
AfiI	CCNNNNNNNGG	2 cut(s)	63, 98
AhdI	GACNNNNNGTC	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	163, 172
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	5 cut(s)	95, 203, 251, 349, 359
AluI	AGCT	5 cut(s)	95, 203, 251, 349, 359
Alw26I	GTCTC	2 cut(s)	18, 66
AlwI	GGATC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	251
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	2 cut(s)	89, 161
AvaII	GGWCC	2 cut(s)	89, 161
BanI	GGYRCC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	165, 174
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	18, 66
BfoI	RGCGCY	1 cut(s)	135
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
Bme1390I	CCNGG	2 cut(s)	165, 174
Bme18I	GGWCC	2 cut(s)	89, 161
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	89, 161
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	2 cut(s)	165, 174
BsaHI	GRCGYC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 98
Bse118I	RCCGGY	1 cut(s)	134
BseBI	CCWGG	2 cut(s)	165, 174
BseLI	CCNNNNNNNGG	2 cut(s)	63, 98
BseRI	GAGGAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	238
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	21, 135
BslI	CCNNNNNNNGG	2 cut(s)	63, 98
BsmAI	GTCTC	2 cut(s)	18, 66
BsmBI	CGTCTC	1 cut(s)	18
Bsp143I	GATC	2 cut(s)	66, 259
BspACI	CCGC	1 cut(s)	117
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	134
BssAI	RCCGGY	1 cut(s)	134
BssMI	GATC	2 cut(s)	66, 259
BssNI	GRCGYC	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	165, 174
Bst6I	CTCTTC	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	2 cut(s)	69, 262
BstMAI	GTCTC	2 cut(s)	18, 66
BstMBI	GATC	2 cut(s)	66, 259
BstNI	CCWGG	2 cut(s)	165, 174
BstSCI	CCNGG	2 cut(s)	163, 172
BstV1I	GCAGC	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	314
CfoI	GCGC	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	134
Cfr13I	GGNCC	2 cut(s)	89, 161
CviJI	RGCY	6 cut(s)	95, 203, 231, 251, 349, 359
CviKI_1	RGCY	6 cut(s)	95, 203, 231, 251, 349, 359
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	68, 261
DpnII	GATC	2 cut(s)	66, 259
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	238
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	89, 161
EcoRII	CCWGG	2 cut(s)	163, 172
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	18
FaiI	YATR	2 cut(s)	234, 258
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	1 cut(s)	252
HaeII	RGCGCY	1 cut(s)	135
HapII	CCGG	2 cut(s)	21, 135
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	132
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	3 cut(s)	102, 156, 311
HpaII	CCGG	2 cut(s)	21, 135
Hpy188I	TCNGA	4 cut(s)	71, 146, 161, 300
Hpy188III	TCNNGA	1 cut(s)	46
HpyCH4IV	ACGT	1 cut(s)	282
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	132
HspAI	GCGC	1 cut(s)	132
KasI	GGCGCC	1 cut(s)	131
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	2 cut(s)	66, 259
LmnI	GCTCC	2 cut(s)	200, 248
LpnPI	CCDG	9 cut(s)	31, 34, 105, 148, 150, 159, 177, 186, 189
Lsp1109I	GCAGC	1 cut(s)	238
MaeII	ACGT	1 cut(s)	282
MalI	GATC	2 cut(s)	68, 261
MboI	GATC	2 cut(s)	66, 259
MboII	GAAGA	4 cut(s)	24, 27, 255, 355
MluCI	AATT	2 cut(s)	182, 213
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	220, 265
MnlI	CCTC	2 cut(s)	140, 239
MseI	TTAA	1 cut(s)	386
MspI	CCGG	2 cut(s)	21, 135
MspR9I	CCNGG	2 cut(s)	165, 174
MvaI	CCWGG	2 cut(s)	165, 174
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	66, 259
NlaIV	GGNNCC	1 cut(s)	133
PfeI	GAWTC	2 cut(s)	156, 311
PflMI	CCANNNNNTGG	1 cut(s)	98
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	96
PluTI	GGCGCC	1 cut(s)	135
PpsI	GAGTC	1 cut(s)	96
Psp1406I	AACGTT	1 cut(s)	282
Psp6I	CCWGG	2 cut(s)	163, 172
PspGI	CCWGG	2 cut(s)	163, 172
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	89, 161
SaqAI	TTAA	1 cut(s)	386
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	2 cut(s)	66, 259
Sau96I	GGNCC	2 cut(s)	89, 161
SchI	GAGTC	1 cut(s)	96
ScrFI	CCNGG	2 cut(s)	165, 174
SetI	ASST	8 cut(s)	97, 151, 205, 226, 253, 285, 351, 361
SfoI	GGCGCC	1 cut(s)	133
SinI	GGWCC	2 cut(s)	89, 161
Sse9I	AATT	2 cut(s)	182, 213
SsiI	CCGC	1 cut(s)	117
SspDI	GGCGCC	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	163, 172
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	1 cut(s)	375
TasI	AATT	2 cut(s)	182, 213
TfiI	GAWTC	2 cut(s)	156, 311
Tru1I	TTAA	1 cut(s)	386
Tru9I	TTAA	1 cut(s)	386
TscAI	CASTG	1 cut(s)	321
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	3 cut(s)	318, 339, 384
TspRI	CASTG	1 cut(s)	321
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	2 cut(s)	89, 161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.