Rorug05G0491900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010368
Physical Location & Seq
Reverse (-)
67467549 .. 67468424
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0491900.1

Sequence Viewer

Length: 876 bp
ATGATTCCGAGCAATGTCCTCGTCTGGAACTGCAGAGGTATTGTTAACCTCGAAACACAAAGAGCATTGATTGATTTGGTTCATGCCAAGCGCCCTTATCTGATCTTCTTGGCTGGAACCCTAGCACCTCCAAAACTGATAAACTCTCTCACATCTCGACTGGGTTTTGCGAATAATATTTGTGTTCAGAAAGAACAAGAGTCACAGGGACTGGCTCTGATATGGAGTCATGATCTTCATGTAGATCTGCGAACTAAATCTCCGCACCATATTGATGCAGAGGTTAGGGAGATTGAGACTGATAGGGTCTGGAGATTTACTGGGGTGTATGGTTTTGCTGCTAGAGAGGATAGACATAAAACATGGGATCTAATTGAAACCCTAGTATCGGAAGTTTGTTCTTTACTGTGGTTGATGGCTGGGGATTTCAACGAGTTGCTAACCCGAGATGACAAATCTAGTGGTCCTCCCCAGGCTTTTGCTCTTATGGCTCAGTTTCGTAACACTATGGCTGCTGCTGGCTTGGTGGATATGGGTTTCTATGGAGGTCGATATACTTGGTTTAACAAGTTCACTAAGGAACGATTGGATCACAGTTTTTGTTCAGGGGCCTGGAAAAGTCTTTTCCTGTTAAGCAAAACGCTTACGTTGCCTCCATCGGACTCTGATCACAATTCTTTGTTGATAGAGGTGAGGACTGAGCGTGTGCAATTTCGATGTGGAAGCAGACGCTTTTGCTTTGAAGAAGTCTGGCATGGACACGAAAGATGCATGAATTATCAAACAAAATTGGTCCACACCTTTAATAGGGAACATGATGCAGCAACTGGGGTCAAAGATTCATTCCACGGGTCAACAGCTCCTGCAATGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

291

Amino Acids

33.22

Weight (kDa)

7.21

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 8 - 224 4e-10 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 263
AclWI GGATC 2 cut(s) 375, 597
AfiI CCNNNNNNNGG 2 cut(s) 388, 807
AgsI TTSAA 3 cut(s) 377, 430, 743
AjnI CCWGG 2 cut(s) 471, 611
AloI GAACNNNNNNTCC 2 cut(s) 244, 276
AluBI AGCT 1 cut(s) 860
AluI AGCT 1 cut(s) 860
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 2 cut(s) 375, 597
AlwNI CAGNNNCTG 3 cut(s) 211, 827, 863
Ama87I CYCGRG 1 cut(s) 444
AoxI GGCC 1 cut(s) 609
ApeKI GCWGC 4 cut(s) 338, 512, 515, 821
AspLEI GCGC 1 cut(s) 93
AspS9I GGNCC 3 cut(s) 464, 609, 793
AsuHPI GGTGA 1 cut(s) 703
AvaI CYCGRG 1 cut(s) 444
AvaII GGWCC 2 cut(s) 464, 793
BaeI ACNNNNGTAYC 2 cut(s) 369, 402
BbvI GCAGC 4 cut(s) 325, 499, 502, 833
BccI CCATC 2 cut(s) 409, 664
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 2 cut(s) 473, 613
BclI TGATCA 1 cut(s) 667
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 4 cut(s) 122, 342, 383, 459
BfmI CTRYAG 1 cut(s) 31
BfoI RGCGCY 1 cut(s) 94
BglII AGATCT 1 cut(s) 244
BisI GCNGC 4 cut(s) 339, 513, 516, 822
BlsI GCNGC 4 cut(s) 340, 514, 517, 823
Bme1390I CCNGG 2 cut(s) 473, 613
Bme18I GGWCC 2 cut(s) 464, 793
BmeT110I CYCGRG 1 cut(s) 444
BmgT120I GGNCC 3 cut(s) 464, 609, 793
BmiI GGNNCC 2 cut(s) 118, 610
BmrFI CCNGG 2 cut(s) 473, 613
BmrI ACTGGG 3 cut(s) 170, 330, 837
BmsI GCATC 3 cut(s) 265, 758, 808
BmuI ACTGGG 3 cut(s) 170, 330, 837
BpmI CTGGAG 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 471, 847
BsaXI ACNNNNNCTCC 4 cut(s) 244, 274, 637, 667
Bsc4I CCNNNNNNNGG 2 cut(s) 388, 807
Bse1I ACTGG 4 cut(s) 165, 216, 325, 832
Bse3DI GCAATG 2 cut(s) 19, 873
BseBI CCWGG 2 cut(s) 473, 613
BseDI CCNNGG 2 cut(s) 471, 847
BseLI CCNNNNNNNGG 2 cut(s) 388, 807
BseMI GCAATG 2 cut(s) 19, 873
BseMII CTCAG 2 cut(s) 506, 690
BseNI ACTGG 4 cut(s) 165, 216, 325, 832
BseXI GCAGC 4 cut(s) 325, 499, 502, 833
BseYI CCCAGC 1 cut(s) 419
BshFI GGCC 1 cut(s) 611
BsiHKCI CYCGRG 1 cut(s) 444
BslFI GGGAC 1 cut(s) 222
BslI CCNNNNNNNGG 2 cut(s) 388, 807
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 1 cut(s) 222
BsnI GGCC 1 cut(s) 611
BsoBI CYCGRG 1 cut(s) 444
Bsp143I GATC 6 cut(s) 102, 232, 244, 367, 589, 667
BspACI CCGC 1 cut(s) 263
BspANI GGCC 1 cut(s) 611
BspCNI CTCAG 2 cut(s) 505, 691
BspHI TCATGA 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 118, 610
BspMAI CTGCAG 1 cut(s) 35
BspPI GGATC 2 cut(s) 375, 597
BsrDI GCAATG 2 cut(s) 19, 873
BsrI ACTGG 4 cut(s) 165, 216, 325, 832
BssECI CCNNGG 2 cut(s) 471, 847
BssMI GATC 6 cut(s) 102, 232, 244, 367, 589, 667
Bst2UI CCWGG 2 cut(s) 473, 613
Bst4CI ACNGT 2 cut(s) 408, 596
BstC8I GCNNGC 1 cut(s) 520
BstDEI CTNAG 3 cut(s) 492, 576, 699
BstDSI CCRYGG 1 cut(s) 847
BstENI CCTNNNNNAGG 1 cut(s) 805
BstH2I RGCGCY 1 cut(s) 94
BstHHI GCGC 1 cut(s) 93
BstKTI GATC 6 cut(s) 105, 235, 247, 370, 592, 670
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 6 cut(s) 102, 232, 244, 367, 589, 667
BstMWI GCNNNNNNNGC 2 cut(s) 488, 649
BstNI CCWGG 2 cut(s) 473, 613
BstSCI CCNGG 2 cut(s) 471, 611
BstSFI CTRYAG 1 cut(s) 31
BstV1I GCAGC 4 cut(s) 325, 499, 502, 833
BstX2I RGATCY 2 cut(s) 244, 367
BstYI RGATCY 2 cut(s) 244, 367
BsuRI GGCC 1 cut(s) 611
BtgI CCRYGG 1 cut(s) 847
Cac8I GCNNGC 1 cut(s) 520
CaiI CAGNNNCTG 3 cut(s) 211, 827, 863
CciI TCATGA 1 cut(s) 229
CfoI GCGC 1 cut(s) 93
Cfr13I GGNCC 3 cut(s) 464, 609, 793
CseI GACGC 1 cut(s) 738
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
CviAII CATG 8 cut(s) 83, 230, 239, 363, 755, 772, 815, 873
CviJI RGCY 9 cut(s) 113, 215, 419, 476, 491, 512, 522, 611, 860
CviKI_1 RGCY 9 cut(s) 113, 215, 419, 476, 491, 512, 522, 611, 860
DdeI CTNAG 3 cut(s) 492, 576, 699
DpnI GATC 6 cut(s) 104, 234, 246, 369, 591, 669
DpnII GATC 6 cut(s) 102, 232, 244, 367, 589, 667
Eco47I GGWCC 2 cut(s) 464, 793
Eco88I CYCGRG 1 cut(s) 444
EcoNI CCTNNNNNAGG 1 cut(s) 805
EcoO109I RGGNCCY 1 cut(s) 609
EcoRII CCWGG 2 cut(s) 471, 611
EcoT22I ATGCAT 1 cut(s) 773
FaeI CATG 8 cut(s) 86, 233, 242, 366, 758, 775, 818, 876
FaqI GGGAC 1 cut(s) 222
FatI CATG 8 cut(s) 82, 229, 238, 362, 754, 771, 814, 872
FbaI TGATCA 1 cut(s) 667
Fnu4HI GCNGC 4 cut(s) 339, 513, 516, 822
Fsp4HI GCNGC 4 cut(s) 339, 513, 516, 822
FspBI CTAG 4 cut(s) 122, 342, 383, 459
GlaI GCGC 1 cut(s) 92
GluI GCNGC 4 cut(s) 339, 513, 516, 822
GsaI CCCAGC 1 cut(s) 423
GsuI CTGGAG 1 cut(s) 331
HaeII RGCGCY 1 cut(s) 94
HaeIII GGCC 1 cut(s) 611
HgaI GACGC 1 cut(s) 738
HhaI GCGC 1 cut(s) 93
Hin1II CATG 8 cut(s) 86, 233, 242, 366, 758, 775, 818, 876
Hin6I GCGC 1 cut(s) 91
HinP1I GCGC 1 cut(s) 91
HincII GTYRAC 2 cut(s) 46, 855
HindII GTYRAC 2 cut(s) 46, 855
HinfI GANTC 5 cut(s) 4, 200, 226, 662, 839
HpaI GTTAAC 1 cut(s) 46
HphI GGTGA 1 cut(s) 703
Hpy166II GTNNAC 4 cut(s) 46, 573, 796, 855
Hpy188I TCNGA 7 cut(s) 9, 102, 189, 219, 391, 661, 667
Hpy188III TCNNGA 4 cut(s) 25, 156, 230, 310
Hpy8I GTNNAC 4 cut(s) 46, 573, 796, 855
HpyCH4III ACNGT 2 cut(s) 408, 596
HpyCH4IV ACGT 1 cut(s) 647
HpyCH4V TGCA 6 cut(s) 33, 278, 709, 771, 821, 866
HpyF10VI GCNNNNNNNGC 2 cut(s) 488, 649
HpyF3I CTNAG 3 cut(s) 492, 576, 699
HpySE526I ACGT 1 cut(s) 647
Hsp92II CATG 8 cut(s) 86, 233, 242, 366, 758, 775, 818, 876
HspAI GCGC 1 cut(s) 91
Ksp22I TGATCA 1 cut(s) 667
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 6 cut(s) 102, 232, 244, 367, 589, 667
LmnI GCTCC 1 cut(s) 865
Lsp1109I GCAGC 4 cut(s) 325, 499, 502, 833
LweI GCATC 3 cut(s) 265, 758, 808
MaeI CTAG 4 cut(s) 122, 342, 383, 459
MaeII ACGT 1 cut(s) 647
MaeIII GTNAC 2 cut(s) 201, 500
MalI GATC 6 cut(s) 104, 234, 246, 369, 591, 669
MboI GATC 6 cut(s) 102, 232, 244, 367, 589, 667
MboII GAAGA 3 cut(s) 97, 227, 755
MflI RGATCY 2 cut(s) 244, 367
MluCI AATT 5 cut(s) 372, 673, 710, 775, 788
MlyI GAGTC 3 cut(s) 209, 235, 656
Mph1103I ATGCAT 1 cut(s) 773
MseI TTAA 4 cut(s) 45, 564, 632, 804
MslI CAYNNNNRTG 1 cut(s) 273
MspR9I CCNGG 2 cut(s) 473, 613
MvaI CCWGG 2 cut(s) 473, 613
MwoI GCNNNNNNNGC 2 cut(s) 488, 649
NdeII GATC 6 cut(s) 102, 232, 244, 367, 589, 667
NlaIII CATG 8 cut(s) 86, 233, 242, 366, 758, 775, 818, 876
NlaIV GGNNCC 2 cut(s) 118, 610
NmuCI GTSAC 1 cut(s) 201
NsiI ATGCAT 1 cut(s) 773
PagI TCATGA 1 cut(s) 229
PfeI GAWTC 2 cut(s) 4, 839
PkrI GCNGC 4 cut(s) 340, 514, 517, 823
PleI GAGTC 3 cut(s) 208, 234, 656
PpsI GAGTC 3 cut(s) 208, 234, 656
Psp6I CCWGG 2 cut(s) 471, 611
PspFI CCCAGC 1 cut(s) 419
PspGI CCWGG 2 cut(s) 471, 611
PspN4I GGNNCC 2 cut(s) 118, 610
PspPI GGNCC 3 cut(s) 464, 609, 793
PstI CTGCAG 1 cut(s) 35
PstNI CAGNNNCTG 3 cut(s) 211, 827, 863
PsuI RGATCY 2 cut(s) 244, 367
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 4 cut(s) 45, 564, 632, 804
SatI GCNGC 4 cut(s) 339, 513, 516, 822
Sau3AI GATC 6 cut(s) 102, 232, 244, 367, 589, 667
Sau96I GGNCC 3 cut(s) 464, 609, 793
SchI GAGTC 3 cut(s) 209, 235, 656
ScrFI CCNGG 2 cut(s) 473, 613
SetI ASST 9 cut(s) 40, 51, 130, 285, 550, 650, 693, 803, 862
SfaNI GCATC 3 cut(s) 265, 758, 808
SfcI CTRYAG 1 cut(s) 31
SinI GGWCC 2 cut(s) 464, 793
SmiMI CAYNNNNRTG 1 cut(s) 273
Sse9I AATT 5 cut(s) 372, 673, 710, 775, 788
SsiI CCGC 1 cut(s) 263
SspI AATATT 1 cut(s) 178
SspMI CTAG 4 cut(s) 122, 342, 383, 459
StyD4I CCNGG 2 cut(s) 471, 611
TaaI ACNGT 2 cut(s) 408, 596
TaiI ACGT 1 cut(s) 650
TaqI TCGA 4 cut(s) 51, 157, 550, 715
TasI AATT 5 cut(s) 372, 673, 710, 775, 788
TfiI GAWTC 2 cut(s) 4, 839
Tru1I TTAA 4 cut(s) 45, 564, 632, 804
Tru9I TTAA 4 cut(s) 45, 564, 632, 804
TseFI GTSAC 1 cut(s) 201
TseI GCWGC 4 cut(s) 338, 512, 515, 821
Tsp45I GTSAC 1 cut(s) 201
TspDTI ATGAA 4 cut(s) 71, 227, 788, 831
VpaK11BI GGWCC 2 cut(s) 464, 793
XagI CCTNNNNNAGG 1 cut(s) 805
XspI CTAG 4 cut(s) 122, 342, 383, 459
Zsp2I ATGCAT 1 cut(s) 773
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.