Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0010368

Physical Location & Seq

Genomic Coordinates Reverse (-)

21782301 .. 21784227

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1103300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATGGGCAGCTGGGGGAGCAGAGAAGATGATGGAGGAGAAGGGAAGGGTTGGTTGTGGAAGCTTCCAGTCCTCAAATCGCAGCAACTAGGGAAGGTGGGCCCCGCCTTTGGCCTCGGCGTTGGCTGCGGCGTGGGCTTCGGCATCGGCCTACTCGGCGGCGCAGGATTTGGTCCTGGGATTCCTGGCTTGCAAGTTGGCTTTGGCCTTGGTGCTGGATGCGGGGTCGGCTTAGGATTCGGCTACGGTGTTGGAAAGGGCAATGCCTACGATGACCATCGCAGGTACTCTAATATTGGCAACCTTTTTCCTGGTGGAAATGTCGGCATTTCGTCTGCTTCTCGAAATCTTCCTACTCAGGATGATATTGGTGCACTTGTTGAGGAGCTTGTTGATAATACGAAGAAACTTGTCAGAGCTACTGCAAGAGAGATGGACAAATGGAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

151

Amino Acids

15.44

Weight (kDa)

9.0

Isoelectric Point (pI)

27.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10330
fragaria_vesca	FvH4_2g00130
malus_domestica	MD00G1103300.v1.1 MD02G1202800.v1.1 MD05G1000400.v1.1 MD11G1234100.v1.1
prunus_persica	Prupe.8G001100_v2.0.a1
pyrus_communis	pycom10g00020 pycom215g00060
rosa_chinensis	RchiOBHm_Chr6g0249391
rosa_laevigata	RLG00000015584 RLG00000026303
rosa_multiflora	Rmu_sc0000278.1_g000004 Rmu_sc0018750.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217770
rosa_rugosa	Rorug05G0491900
rosa_samantha	Rh6AG001700 Rh6BG008400 Rh6CG000700 Rh6DG000800
rosa_wichuraiana	Rw6G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	273
AciI	CCGC	4 cut(s)	105, 129, 159, 222
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	110
AjnI	CCWGG	3 cut(s)	175, 184, 310
AluBI	AGCT	4 cut(s)	12, 64, 388, 419
AluI	AGCT	4 cut(s)	12, 64, 388, 419
Alw21I	GWGCWC	1 cut(s)	376
Alw44I	GTGCAC	1 cut(s)	372
AoxI	GGCC	4 cut(s)	100, 112, 148, 205
ApaI	GGGCCC	1 cut(s)	104
ApaLI	GTGCAC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	9, 82, 126
AspLEI	GCGC	1 cut(s)	164
AspS9I	GGNCC	3 cut(s)	100, 101, 173
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	2 cut(s)	104, 376
BanII	GRGCYC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	3 cut(s)	21, 94, 113
BccI	CCATC	3 cut(s)	26, 285, 427
BciT130I	CCWGG	3 cut(s)	177, 186, 312
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	273
BglI	GCCNNNNNGGC	1 cut(s)	156
BisI	GCNGC	5 cut(s)	10, 83, 127, 130, 160
BlsI	GCNGC	5 cut(s)	11, 84, 128, 131, 161
Bme1390I	CCNGG	3 cut(s)	177, 186, 312
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	3 cut(s)	100, 101, 173
BmiI	GGNNCC	2 cut(s)	102, 103
BmrFI	CCNGG	3 cut(s)	177, 186, 312
BmsI	GCATC	2 cut(s)	153, 209
Bpu10I	CCTNAGC	1 cut(s)	232
BsaBI	GATNNNNATC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	115, 176, 208
Bsc4I	CCNNNNNNNGG	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	68
Bse3DI	GCAATG	1 cut(s)	268
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	3 cut(s)	177, 186, 312
BseDI	CCNNGG	3 cut(s)	115, 176, 208
BseGI	GGATG	2 cut(s)	224, 367
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	110
BseMI	GCAATG	1 cut(s)	268
BseMII	CTCAG	1 cut(s)	371
BseNI	ACTGG	1 cut(s)	68
BseRI	GAGGAG	2 cut(s)	51, 398
BseSI	GKGCMC	2 cut(s)	104, 376
BseXI	GCAGC	3 cut(s)	21, 94, 113
BseYI	CCCAGC	1 cut(s)	12
BshFI	GGCC	4 cut(s)	102, 114, 150, 207
BsiHKAI	GWGCWC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	110
BsnI	GGCC	4 cut(s)	102, 114, 150, 207
Bsp120I	GGGCCC	1 cut(s)	100
Bsp1286I	GDGCHC	2 cut(s)	104, 376
BspACI	CCGC	4 cut(s)	105, 129, 159, 222
BspANI	GGCC	4 cut(s)	102, 114, 150, 207
BspCNI	CTCAG	1 cut(s)	370
BspLI	GGNNCC	2 cut(s)	102, 103
BspMI	ACCTGC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	115, 176, 208
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	3 cut(s)	177, 186, 312
Bst4CI	ACNGT	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	191
BstDEI	CTNAG	2 cut(s)	232, 357
BstF5I	GGATG	2 cut(s)	224, 367
BstHHI	GCGC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 126, 135, 156, 228
BstNI	CCWGG	3 cut(s)	177, 186, 312
BstSCI	CCNGG	3 cut(s)	175, 184, 310
BstSLI	GKGCMC	2 cut(s)	104, 376
BstV1I	GCAGC	3 cut(s)	21, 94, 113
BsuRI	GGCC	4 cut(s)	102, 114, 150, 207
BtgZI	GCGATG	1 cut(s)	263
BtsCI	GGATG	2 cut(s)	224, 367
BveI	ACCTGC	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	191
CfoI	GCGC	1 cut(s)	164
Cfr13I	GGNCC	3 cut(s)	100, 101, 173
Csp6I	GTAC	1 cut(s)	286
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	2 cut(s)	232, 357
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	104
Eco47I	GGWCC	1 cut(s)	173
EcoO109I	RGGNCCY	1 cut(s)	101
EcoRII	CCWGG	3 cut(s)	175, 184, 310
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	104
ErhI	CCWWGG	1 cut(s)	208
FauI	CCCGC	2 cut(s)	112, 215
Fnu4HI	GCNGC	5 cut(s)	10, 83, 127, 130, 160
FokI	GGATG	2 cut(s)	231, 374
FriOI	GRGCYC	1 cut(s)	104
Fsp4HI	GCNGC	5 cut(s)	10, 83, 127, 130, 160
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	5 cut(s)	10, 83, 127, 130, 160
GsaI	CCCAGC	1 cut(s)	16
HaeIII	GGCC	4 cut(s)	102, 114, 150, 207
HhaI	GCGC	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HindIII	AAGCTT	1 cut(s)	62
HinfI	GANTC	2 cut(s)	181, 237
Hpy166II	GTNNAC	1 cut(s)	374
Hpy188I	TCNGA	1 cut(s)	416
Hpy188III	TCNNGA	2 cut(s)	342, 359
Hpy8I	GTNNAC	1 cut(s)	374
HpyAV	CCTTC	3 cut(s)	35, 40, 88
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4V	TGCA	3 cut(s)	193, 374, 425
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 126, 135, 156, 228
HpyF3I	CTNAG	2 cut(s)	232, 357
HspAI	GCGC	1 cut(s)	162
LmnI	GCTCC	2 cut(s)	18, 385
Lsp1109I	GCAGC	3 cut(s)	21, 94, 113
LweI	GCATC	2 cut(s)	153, 209
MaeI	CTAG	1 cut(s)	89
MboII	GAAGA	3 cut(s)	38, 341, 415
MhlI	GDGCHC	2 cut(s)	104, 376
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	4 cut(s)	29, 83, 125, 376
MspA1I	CMGCKG	1 cut(s)	12
MspR9I	CCNGG	3 cut(s)	177, 186, 312
MvaI	CCWGG	3 cut(s)	177, 186, 312
MwoI	GCNNNNNNNGC	5 cut(s)	18, 126, 135, 156, 228
NlaIV	GGNNCC	2 cut(s)	102, 103
NmeAIII	GCCGAG	2 cut(s)	96, 135
PfeI	GAWTC	2 cut(s)	181, 237
PkrI	GCNGC	5 cut(s)	11, 84, 128, 131, 161
Psp6I	CCWGG	3 cut(s)	175, 184, 310
PspFI	CCCAGC	1 cut(s)	12
PspGI	CCWGG	3 cut(s)	175, 184, 310
PspN4I	GGNNCC	2 cut(s)	102, 103
PspOMI	GGGCCC	1 cut(s)	100
PspPI	GGNCC	3 cut(s)	100, 101, 173
PvuII	CAGCTG	1 cut(s)	12
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SatI	GCNGC	5 cut(s)	10, 83, 127, 130, 160
Sau96I	GGNCC	3 cut(s)	100, 101, 173
ScrFI	CCNGG	3 cut(s)	177, 186, 312
SduI	GDGCHC	2 cut(s)	104, 376
SetI	ASST	7 cut(s)	14, 66, 99, 287, 306, 390, 421
SfaNI	GCATC	2 cut(s)	153, 209
SinI	GGWCC	1 cut(s)	173
SsiI	CCGC	4 cut(s)	105, 129, 159, 222
SspI	AATATT	1 cut(s)	295
SspMI	CTAG	1 cut(s)	89
StyD4I	CCNGG	3 cut(s)	175, 184, 310
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	248
TaqI	TCGA	1 cut(s)	343
TauI	GCSGC	2 cut(s)	132, 162
TfiI	GAWTC	2 cut(s)	181, 237
TseI	GCWGC	3 cut(s)	9, 82, 126
VneI	GTGCAC	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	173
XspI	CTAG	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.