RLG00000026303

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0010368
Physical Location & Seq
Reverse (-)
1995630 .. 1997507
1878 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026303

Sequence Viewer

Length: 636 bp
ATGATTATGGTGATAGAGAAGCATTTGTTCGAGACTGATCTGACTGATGGCGCAGATGGCGCAAGCCGATTGTCAATGCCTCTGAAACAAATCAAACCGGAGAGTTTCTTGGACGAGAATGAGATACAGTTTATTGCATCTCAACAAGACTGGCCGGTTTCAGTTATAAGTCCCAAACTTGAGGATGAAAGCCTAACTTTTAGGCAGTGGAACATGAATAAAAATAACGGAAACGTTAGCTCAAGTTATGTGTTGAAAACAGCATTCTTGAGGAAGTATCTTCAAGGTGGGTCCCGCCTTTGCCTCCGGCGTCGGCCGTGGTGTGGGATTCGGCATCGGCTCCTCGGCGGCGTTCGAATTGGTCCTGGTATTCCTGGCATGCAAGTTGCTTTTGGCGCTAGTGCTGGCTGTGGAGTTGGCTTAGGATTCGGCTTTGGCGCTGGCAAGGGCGTTGCTCGTGATGACATCCGAAAGTACTTCAATGTTGGCAATCTCTTTTATGGTGAAAATGTTGGCAGTCGTTCTGGAAATCCTACTTCCCAGGATGAAATAGGCGCTCTTGTTGACGAGCTTGTTGATAATACTAAGAAACTGGTCAGAGCTACTACAAGAGAGATCGACATGTGGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

23.32

Weight (kDa)

9.01

Isoelectric Point (pI)

38.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At2g31720-like PF03754 4 - 86 1e-08 B3 domain-containing protein At2g31720-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 167
AciI CCGC 2 cut(s) 295, 348
AclI AACGTT 1 cut(s) 234
AcoI YGGCCR 2 cut(s) 152, 314
AcyI GRCGYC 1 cut(s) 310
AfaI GTAC 1 cut(s) 476
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 621
AgsI TTSAA 3 cut(s) 256, 284, 481
AjnI CCWGG 3 cut(s) 364, 373, 540
AluBI AGCT 3 cut(s) 240, 571, 602
AluI AGCT 3 cut(s) 240, 571, 602
Alw26I GTCTC 1 cut(s) 26
AoxI GGCC 2 cut(s) 152, 314
AspLEI GCGC 5 cut(s) 53, 62, 398, 440, 557
AspS9I GGNCC 2 cut(s) 291, 362
AsuHPI GGTGA 2 cut(s) 22, 515
AsuII TTCGAA 1 cut(s) 355
AvaII GGWCC 2 cut(s) 291, 362
BauI CACGAG 1 cut(s) 456
BccI CCATC 2 cut(s) 41, 50
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 3 cut(s) 366, 375, 542
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 399
BfoI RGCGCY 3 cut(s) 399, 441, 558
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 3 cut(s) 366, 375, 542
Bme18I GGWCC 2 cut(s) 291, 362
BmgT120I GGNCC 2 cut(s) 291, 362
BmiI GGNNCC 3 cut(s) 292, 293, 341
BmrFI CCNGG 3 cut(s) 366, 375, 542
BmsI GCATC 2 cut(s) 146, 343
Bpu10I CCTNAGC 1 cut(s) 421
Bpu14I TTCGAA 1 cut(s) 355
BpuEI CTTGAG 3 cut(s) 200, 226, 289
BsaHI GRCGYC 1 cut(s) 310
BsaJI CCNNGG 3 cut(s) 317, 343, 540
BsaWI WCCGGW 1 cut(s) 97
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 155, 597
BseBI CCWGG 3 cut(s) 366, 375, 542
BseDI CCNNGG 3 cut(s) 317, 343, 540
BseGI GGATG 3 cut(s) 190, 465, 550
BseLI CCNNNNNNNGG 1 cut(s) 323
BseNI ACTGG 2 cut(s) 155, 597
BseRI GAGGAG 1 cut(s) 332
BseX3I CGGCCG 1 cut(s) 314
Bsh1285I CGRYCG 1 cut(s) 317
BshFI GGCC 2 cut(s) 154, 316
BsiEI CGRYCG 1 cut(s) 317
BsiSI CCGG 3 cut(s) 98, 155, 307
BslFI GGGAC 2 cut(s) 156, 277
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 156, 277
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 2 cut(s) 154, 316
Bsp119I TTCGAA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 37, 615
BspACI CCGC 2 cut(s) 295, 348
BspANI GGCC 2 cut(s) 154, 316
BspLI GGNNCC 3 cut(s) 292, 293, 341
BspT104I TTCGAA 1 cut(s) 355
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 155, 597
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 3 cut(s) 317, 343, 540
BssMI GATC 2 cut(s) 37, 615
BssNI GRCGYC 1 cut(s) 310
BssSI CACGAG 1 cut(s) 456
Bst2BI CACGAG 1 cut(s) 456
Bst2UI CCWGG 3 cut(s) 366, 375, 542
Bst4CI ACNGT 1 cut(s) 129
BstACI GRCGYC 1 cut(s) 310
BstBI TTCGAA 1 cut(s) 355
BstC8I GCNNGC 4 cut(s) 64, 380, 406, 442
BstDEI CTNAG 2 cut(s) 421, 585
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 3 cut(s) 190, 465, 550
BstH2I RGCGCY 3 cut(s) 399, 441, 558
BstHHI GCGC 5 cut(s) 53, 62, 398, 440, 557
BstKTI GATC 2 cut(s) 40, 618
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 37, 615
BstMCI CGRYCG 1 cut(s) 317
BstMWI GCNNNNNNNGC 3 cut(s) 57, 59, 395
BstNI CCWGG 3 cut(s) 366, 375, 542
BstNSI RCATGY 2 cut(s) 382, 625
BstSCI CCNGG 3 cut(s) 364, 373, 540
BstZI CGGCCG 1 cut(s) 314
BsuRI GGCC 2 cut(s) 154, 316
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 3 cut(s) 190, 465, 550
BtsI GCAGTG 1 cut(s) 212
BtsIMutI CAGTG 1 cut(s) 212
Cac8I GCNNGC 4 cut(s) 64, 380, 406, 442
CfoI GCGC 5 cut(s) 53, 62, 398, 440, 557
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 291, 362
CseI GACGC 1 cut(s) 299
Csp6I GTAC 1 cut(s) 475
CviAII CATG 3 cut(s) 214, 379, 622
CviQI GTAC 1 cut(s) 475
DdeI CTNAG 2 cut(s) 421, 585
DpnI GATC 2 cut(s) 39, 617
DpnII GATC 2 cut(s) 37, 615
EaeI YGGCCR 2 cut(s) 152, 314
EagI CGGCCG 1 cut(s) 314
EclXI CGGCCG 1 cut(s) 314
Eco47I GGWCC 2 cut(s) 291, 362
Eco52I CGGCCG 1 cut(s) 314
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 3 cut(s) 364, 373, 540
FaeI CATG 3 cut(s) 217, 382, 625
FaiI YATR 7 cut(s) 8, 167, 215, 249, 380, 501, 623
FalI AAGNNNNNCTT 2 cut(s) 181, 213
FaqI GGGAC 2 cut(s) 156, 277
FatI CATG 3 cut(s) 213, 378, 621
FauI CCCGC 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 349
FokI GGATG 3 cut(s) 197, 452, 557
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 399
GlaI GCGC 5 cut(s) 52, 61, 397, 439, 556
GluI GCNGC 1 cut(s) 349
HaeII RGCGCY 3 cut(s) 399, 441, 558
HaeIII GGCC 2 cut(s) 154, 316
HapII CCGG 3 cut(s) 98, 155, 307
HgaI GACGC 1 cut(s) 299
HhaI GCGC 5 cut(s) 53, 62, 398, 440, 557
Hin1I GRCGYC 1 cut(s) 310
Hin1II CATG 3 cut(s) 217, 382, 625
Hin6I GCGC 5 cut(s) 51, 60, 396, 438, 555
HinP1I GCGC 5 cut(s) 51, 60, 396, 438, 555
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 2 cut(s) 328, 426
HpaII CCGG 3 cut(s) 98, 155, 307
HphI GGTGA 2 cut(s) 22, 515
Hpy166II GTNNAC 2 cut(s) 565, 627
Hpy188I TCNGA 4 cut(s) 42, 84, 470, 599
Hpy188III TCNNGA 4 cut(s) 31, 268, 458, 525
Hpy8I GTNNAC 2 cut(s) 565, 627
Hpy99I CGWCG 1 cut(s) 315
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 2 cut(s) 137, 382
HpyF10VI GCNNNNNNNGC 3 cut(s) 57, 59, 395
HpyF3I CTNAG 2 cut(s) 421, 585
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 310
Hsp92II CATG 3 cut(s) 217, 382, 625
HspAI GCGC 5 cut(s) 51, 60, 396, 438, 555
KflI GGGWCCC 1 cut(s) 291
Kzo9I GATC 2 cut(s) 37, 615
LmnI GCTCC 1 cut(s) 345
LweI GCATC 2 cut(s) 146, 343
MaeI CTAG 1 cut(s) 399
MaeII ACGT 1 cut(s) 234
MalI GATC 2 cut(s) 39, 617
MboI GATC 2 cut(s) 37, 615
MboII GAAGA 1 cut(s) 272
MluCI AATT 1 cut(s) 357
MnlI CCTC 5 cut(s) 90, 175, 264, 314, 353
MspI CCGG 3 cut(s) 98, 155, 307
MspR9I CCNGG 3 cut(s) 366, 375, 542
Mva1269I GAATGC 1 cut(s) 263
MvaI CCWGG 3 cut(s) 366, 375, 542
MwoI GCNNNNNNNGC 3 cut(s) 57, 59, 395
NdeII GATC 2 cut(s) 37, 615
NlaIII CATG 3 cut(s) 217, 382, 625
NlaIV GGNNCC 3 cut(s) 292, 293, 341
NmeAIII GCCGAG 1 cut(s) 324
NspI RCATGY 2 cut(s) 382, 625
NspV TTCGAA 1 cut(s) 355
PaeI GCATGC 1 cut(s) 382
PciI ACATGT 1 cut(s) 621
PctI GAATGC 1 cut(s) 263
PfeI GAWTC 2 cut(s) 328, 426
PkrI GCNGC 1 cut(s) 350
PpuMI RGGWCCY 1 cut(s) 291
PscI ACATGT 1 cut(s) 621
PsiI TTATAA 1 cut(s) 167
Psp1406I AACGTT 1 cut(s) 234
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 3 cut(s) 364, 373, 540
PspGI CCWGG 3 cut(s) 364, 373, 540
PspN4I GGNNCC 3 cut(s) 292, 293, 341
PspPI GGNCC 2 cut(s) 291, 362
PspPPI RGGWCCY 1 cut(s) 291
RsaI GTAC 1 cut(s) 476
RsaNI GTAC 1 cut(s) 475
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 2 cut(s) 37, 615
Sau96I GGNCC 2 cut(s) 291, 362
ScaI AGTACT 1 cut(s) 476
ScrFI CCNGG 3 cut(s) 366, 375, 542
SetI ASST 5 cut(s) 237, 242, 289, 573, 604
SfaNI GCATC 2 cut(s) 146, 343
SfuI TTCGAA 1 cut(s) 355
SinI GGWCC 2 cut(s) 291, 362
SmlI CTYRAG 3 cut(s) 179, 241, 268
SmoI CTYRAG 3 cut(s) 179, 241, 268
SphI GCATGC 1 cut(s) 382
Sse9I AATT 1 cut(s) 357
SsiI CCGC 2 cut(s) 295, 348
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 3 cut(s) 364, 373, 540
TaaI ACNGT 1 cut(s) 129
TaiI ACGT 1 cut(s) 237
TaqI TCGA 3 cut(s) 30, 355, 618
TasI AATT 1 cut(s) 357
TatI WGTACW 1 cut(s) 474
TauI GCSGC 1 cut(s) 351
TfiI GAWTC 2 cut(s) 328, 426
TscAI CASTG 1 cut(s) 212
TspDTI ATGAA 3 cut(s) 201, 230, 561
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 1 cut(s) 212
VpaK11BI GGWCC 2 cut(s) 291, 362
XceI RCATGY 2 cut(s) 382, 625
XspI CTAG 1 cut(s) 399
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.