Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010368

Physical Location & Seq

Genomic Coordinates Reverse (-)

68195954 .. 68197484

Gene Structure 1531 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015584

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCGAGGGATGAAGAGCACAAGGGTTTGTTGTGGAAGCTTCCAGTCATCAAAACCCAGCAACTCGGCAAGGTGGGTCCCGCCTTTGGCTTCGGCGTCGGCTGTGGTGTGGGACTCGGCATCGGTCTCCTTGGCGGCGTCGGAATTGGTCCTGGTATTCCTGGCATGCAAGTTGCTTTTGGCGTTGGTGCTGGATGTGGAGTTGGCTTCGGATTCGGCTATGGCGCTGGGAAGGGGGTTGCTCGTGATGACATCCGAAAGTACTCCAATGTTGGCAATCTCTTTTATGGTGAAAATGTTGTCAGTCGTTCTGGAAATCCTACTTCCCAGGATGAAATAGGCGCTCTTGTTGATGAGCTTGTTGATAATACTAAGAAACTGGTCAAAGCTACTACAAGAGAGATCGACAAGTGGACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.47

Weight (kDa)

8.93

Isoelectric Point (pI)

11.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10330
fragaria_vesca	FvH4_2g00130
malus_domestica	MD00G1103300.v1.1 MD02G1202800.v1.1 MD05G1000400.v1.1 MD11G1234100.v1.1
prunus_persica	Prupe.8G001100_v2.0.a1
pyrus_communis	pycom10g00020 pycom215g00060
rosa_chinensis	RchiOBHm_Chr6g0249391
rosa_laevigata	RLG00000015584 RLG00000026303
rosa_multiflora	Rmu_sc0000278.1_g000004 Rmu_sc0018750.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217770
rosa_rugosa	Rorug05G0491900
rosa_samantha	Rh6AG001700 Rh6BG008400 Rh6CG000700 Rh6DG000800
rosa_wichuraiana	Rw6G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	81, 135
AcyI	GRCGYC	2 cut(s)	96, 138
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	86
AjnI	CCWGG	3 cut(s)	151, 160, 327
AluBI	AGCT	3 cut(s)	40, 358, 389
AluI	AGCT	3 cut(s)	40, 358, 389
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	131
AspLEI	GCGC	2 cut(s)	227, 344
AspS9I	GGNCC	2 cut(s)	77, 149
AsuHPI	GGTGA	1 cut(s)	302
AvaII	GGWCC	2 cut(s)	77, 149
BauI	CACGAG	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	21
BciT130I	CCWGG	3 cut(s)	153, 162, 329
BcoDI	GTCTC	1 cut(s)	131
BfoI	RGCGCY	2 cut(s)	228, 345
BisI	GCNGC	1 cut(s)	136
BlsI	GCNGC	1 cut(s)	137
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	3 cut(s)	153, 162, 329
Bme18I	GGWCC	2 cut(s)	77, 149
BmgT120I	GGNCC	2 cut(s)	77, 149
BmiI	GGNNCC	2 cut(s)	78, 79
BmrFI	CCNGG	3 cut(s)	153, 162, 329
BmsI	GCATC	1 cut(s)	129
BsaHI	GRCGYC	2 cut(s)	96, 138
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	130, 327
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	44, 384
BseBI	CCWGG	3 cut(s)	153, 162, 329
BseDI	CCNNGG	2 cut(s)	130, 327
BseGI	GGATG	4 cut(s)	16, 200, 252, 337
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	2 cut(s)	44, 384
BseYI	CCCAGC	2 cut(s)	57, 227
BsiHKAI	GWGCWC	1 cut(s)	21
BslFI	GGGAC	2 cut(s)	63, 126
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	63, 126
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	2 cut(s)	81, 135
BspLI	GGNNCC	2 cut(s)	78, 79
BspQI	GCTCTTC	1 cut(s)	9
BspTNI	GGTCTC	1 cut(s)	131
BsrI	ACTGG	2 cut(s)	44, 384
BssECI	CCNNGG	2 cut(s)	130, 327
BssMI	GATC	1 cut(s)	402
BssNI	GRCGYC	2 cut(s)	96, 138
BssSI	CACGAG	1 cut(s)	243
BssT1I	CCWWGG	1 cut(s)	130
Bst2BI	CACGAG	1 cut(s)	243
Bst2UI	CCWGG	3 cut(s)	153, 162, 329
Bst6I	CTCTTC	1 cut(s)	9
BstACI	GRCGYC	2 cut(s)	96, 138
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	372
BstF5I	GGATG	4 cut(s)	16, 200, 252, 337
BstH2I	RGCGCY	2 cut(s)	228, 345
BstHHI	GCGC	2 cut(s)	227, 344
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	402
BstNI	CCWGG	3 cut(s)	153, 162, 329
BstNSI	RCATGY	1 cut(s)	169
BstSCI	CCNGG	3 cut(s)	151, 160, 327
BtsCI	GGATG	4 cut(s)	16, 200, 252, 337
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	2 cut(s)	227, 344
Cfr13I	GGNCC	2 cut(s)	77, 149
CseI	GACGC	2 cut(s)	85, 127
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	1 cut(s)	166
CviJI	RGCY	7 cut(s)	40, 90, 102, 207, 219, 358, 389
CviKI_1	RGCY	7 cut(s)	40, 90, 102, 207, 219, 358, 389
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	9
EarI	CTCTTC	1 cut(s)	9
Eco130I	CCWWGG	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	2 cut(s)	77, 149
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	151, 160, 327
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	1 cut(s)	169
FaiI	YATR	3 cut(s)	167, 222, 288
FaqI	GGGAC	2 cut(s)	63, 126
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	136
FokI	GGATG	4 cut(s)	23, 207, 239, 344
Fsp4HI	GCNGC	1 cut(s)	136
GlaI	GCGC	2 cut(s)	226, 343
GluI	GCNGC	1 cut(s)	136
GsaI	CCCAGC	2 cut(s)	61, 231
HaeII	RGCGCY	2 cut(s)	228, 345
HgaI	GACGC	2 cut(s)	85, 127
HhaI	GCGC	2 cut(s)	227, 344
Hin1I	GRCGYC	2 cut(s)	96, 138
Hin1II	CATG	1 cut(s)	169
Hin6I	GCGC	2 cut(s)	225, 342
HinP1I	GCGC	2 cut(s)	225, 342
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	114, 213
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	1 cut(s)	414
Hpy188I	TCNGA	3 cut(s)	143, 212, 257
Hpy188III	TCNNGA	2 cut(s)	245, 312
Hpy8I	GTNNAC	1 cut(s)	414
Hpy99I	CGWCG	2 cut(s)	101, 143
HpyAV	CCTTC	1 cut(s)	226
HpyCH4V	TGCA	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	372
Hsp92I	GRCGYC	2 cut(s)	96, 138
Hsp92II	CATG	1 cut(s)	169
HspAI	GCGC	2 cut(s)	225, 342
KflI	GGGWCCC	1 cut(s)	77
Kzo9I	GATC	1 cut(s)	402
LguI	GCTCTTC	1 cut(s)	9
LweI	GCATC	1 cut(s)	129
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	108
MmeI	TCCRAC	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	153, 162, 329
MvaI	CCWGG	3 cut(s)	153, 162, 329
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	2 cut(s)	78, 79
NmeAIII	GCCGAG	2 cut(s)	45, 96
NspI	RCATGY	1 cut(s)	169
PaeI	GCATGC	1 cut(s)	169
PciSI	GCTCTTC	1 cut(s)	9
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	137
PleI	GAGTC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	108
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	3 cut(s)	151, 160, 327
PspFI	CCCAGC	2 cut(s)	57, 227
PspGI	CCWGG	3 cut(s)	151, 160, 327
PspN4I	GGNNCC	2 cut(s)	78, 79
PspPI	GGNCC	2 cut(s)	77, 149
PspPPI	RGGWCCY	1 cut(s)	77
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
SapI	GCTCTTC	1 cut(s)	9
SatI	GCNGC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	2 cut(s)	77, 149
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	1 cut(s)	108
ScrFI	CCNGG	3 cut(s)	153, 162, 329
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	4 cut(s)	42, 75, 360, 391
SfaNI	GCATC	1 cut(s)	129
SinI	GGWCC	2 cut(s)	77, 149
SphI	GCATGC	1 cut(s)	169
Sse9I	AATT	1 cut(s)	144
SsiI	CCGC	2 cut(s)	81, 135
StyD4I	CCNGG	3 cut(s)	151, 160, 327
StyI	CCWWGG	1 cut(s)	130
TaqI	TCGA	1 cut(s)	405
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	1 cut(s)	144
TatI	WGTACW	1 cut(s)	261
TauI	GCSGC	1 cut(s)	138
TfiI	GAWTC	1 cut(s)	213
TspDTI	ATGAA	2 cut(s)	27, 348
VpaK11BI	GGWCC	2 cut(s)	77, 149
XceI	RCATGY	1 cut(s)	169
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.