Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0010368

Physical Location & Seq

Genomic Coordinates Reverse (-)

68291407 .. 68292844

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00217770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGAGGGATGAAGAAGAGCACAAGGGTTGGTTGTGGAAGCTTCCAGTCATCAAAACCCAGCAACTCGGCAAGGTGGGTCCCGCCTTTGGCTTCGGCGTCGGCTGTGGTGTGGGATTCGGCATCGGCCTCCTCGGCGGCGTAGGAATTGGTCCTGGTATTCCTGGCATGCAAGTTGCTTTTGGCGTTGGTGCTGGATGTGGAGTTGGCTTCGGATTCGGCTATGGCGCTGGCAAGGGGGTTGCTCGTGATGACATCCGAAAGTACTCCAATGTTGGCAATCTCTTTTATGGTGAAAATGTTGGCAGTCGTTCTGGAAATCCTACTTCCCAGGATGAAATAGGCGCTCTTGTTGACGAGCTTGTTGATAAGACTAAGAAACTGGTCAGAGCTACTACAAGAGAGATCGACAAGTGGGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

14.66

Weight (kDa)

8.93

Isoelectric Point (pI)

15.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10330
fragaria_vesca	FvH4_2g00130
malus_domestica	MD00G1103300.v1.1 MD02G1202800.v1.1 MD05G1000400.v1.1 MD11G1234100.v1.1
prunus_persica	Prupe.8G001100_v2.0.a1
pyrus_communis	pycom10g00020 pycom215g00060
rosa_chinensis	RchiOBHm_Chr6g0249391
rosa_laevigata	RLG00000015584 RLG00000026303
rosa_multiflora	Rmu_sc0000278.1_g000004 Rmu_sc0018750.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217770
rosa_rugosa	Rorug05G0491900
rosa_samantha	Rh6AG001700 Rh6BG008400 Rh6CG000700 Rh6DG000800
rosa_wichuraiana	Rw6G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	84, 138
AcyI	GRCGYC	1 cut(s)	99
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	1 cut(s)	89
AjnI	CCWGG	3 cut(s)	154, 163, 330
AluBI	AGCT	3 cut(s)	43, 361, 392
AluI	AGCT	3 cut(s)	43, 361, 392
Alw21I	GWGCWC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	230, 347
AspS9I	GGNCC	2 cut(s)	80, 152
AsuHPI	GGTGA	1 cut(s)	305
AvaII	GGWCC	2 cut(s)	80, 152
BauI	CACGAG	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	24
BciT130I	CCWGG	3 cut(s)	156, 165, 332
BfoI	RGCGCY	2 cut(s)	231, 348
BglI	GCCNNNNNGGC	1 cut(s)	135
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
BmcAI	AGTACT	1 cut(s)	266
Bme1390I	CCNGG	3 cut(s)	156, 165, 332
Bme18I	GGWCC	2 cut(s)	80, 152
BmgT120I	GGNCC	2 cut(s)	80, 152
BmiI	GGNNCC	2 cut(s)	81, 82
BmrFI	CCNGG	3 cut(s)	156, 165, 332
BmsI	GCATC	1 cut(s)	132
BsaHI	GRCGYC	1 cut(s)	99
BsaJI	CCNNGG	2 cut(s)	133, 330
Bsc4I	CCNNNNNNNGG	1 cut(s)	89
Bse1I	ACTGG	2 cut(s)	47, 387
BseBI	CCWGG	3 cut(s)	156, 165, 332
BseDI	CCNNGG	2 cut(s)	133, 330
BseGI	GGATG	4 cut(s)	16, 203, 255, 340
BseLI	CCNNNNNNNGG	1 cut(s)	89
BseNI	ACTGG	2 cut(s)	47, 387
BseRI	GAGGAG	1 cut(s)	122
BseYI	CCCAGC	1 cut(s)	60
BshFI	GGCC	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	24
BslFI	GGGAC	1 cut(s)	66
BslI	CCNNNNNNNGG	1 cut(s)	89
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	129
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	405
BspACI	CCGC	2 cut(s)	84, 138
BspANI	GGCC	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	81, 82
BspQI	GCTCTTC	1 cut(s)	12
BsrI	ACTGG	2 cut(s)	47, 387
BssECI	CCNNGG	2 cut(s)	133, 330
BssMI	GATC	1 cut(s)	405
BssNI	GRCGYC	1 cut(s)	99
BssSI	CACGAG	1 cut(s)	246
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	3 cut(s)	156, 165, 332
Bst6I	CTCTTC	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	170, 232
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	4 cut(s)	16, 203, 255, 340
BstH2I	RGCGCY	2 cut(s)	231, 348
BstHHI	GCGC	2 cut(s)	230, 347
BstKTI	GATC	1 cut(s)	408
BstMBI	GATC	1 cut(s)	405
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	3 cut(s)	156, 165, 332
BstNSI	RCATGY	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	154, 163, 330
BsuRI	GGCC	1 cut(s)	129
BtsCI	GGATG	4 cut(s)	16, 203, 255, 340
Cac8I	GCNNGC	2 cut(s)	170, 232
CfoI	GCGC	2 cut(s)	230, 347
Cfr13I	GGNCC	2 cut(s)	80, 152
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	8 cut(s)	43, 93, 105, 129, 210, 222, 361, 392
CviKI_1	RGCY	8 cut(s)	43, 93, 105, 129, 210, 222, 361, 392
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	375
DpnI	GATC	1 cut(s)	407
DpnII	GATC	1 cut(s)	405
Eam1104I	CTCTTC	1 cut(s)	12
EarI	CTCTTC	1 cut(s)	12
Eco47I	GGWCC	2 cut(s)	80, 152
EcoO109I	RGGNCCY	1 cut(s)	80
EcoRII	CCWGG	3 cut(s)	154, 163, 330
FaeI	CATG	1 cut(s)	172
FaiI	YATR	3 cut(s)	170, 225, 291
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	1 cut(s)	168
FauI	CCCGC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	4 cut(s)	23, 210, 242, 347
Fsp4HI	GCNGC	1 cut(s)	139
GlaI	GCGC	2 cut(s)	229, 346
GluI	GCNGC	1 cut(s)	139
GsaI	CCCAGC	1 cut(s)	64
HaeII	RGCGCY	2 cut(s)	231, 348
HaeIII	GGCC	1 cut(s)	129
HgaI	GACGC	1 cut(s)	88
HhaI	GCGC	2 cut(s)	230, 347
Hin1I	GRCGYC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	2 cut(s)	228, 345
HinP1I	GCGC	2 cut(s)	228, 345
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	41
HinfI	GANTC	2 cut(s)	117, 216
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	3 cut(s)	215, 260, 389
Hpy188III	TCNNGA	2 cut(s)	248, 315
Hpy8I	GTNNAC	1 cut(s)	355
Hpy99I	CGWCG	1 cut(s)	104
HpyCH4V	TGCA	1 cut(s)	172
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	1 cut(s)	375
Hsp92I	GRCGYC	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	2 cut(s)	228, 345
KflI	GGGWCCC	1 cut(s)	80
Kzo9I	GATC	1 cut(s)	405
LguI	GCTCTTC	1 cut(s)	12
LweI	GCATC	1 cut(s)	132
MalI	GATC	1 cut(s)	407
MboI	GATC	1 cut(s)	405
MboII	GAAGA	2 cut(s)	26, 29
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	1 cut(s)	147
MnlI	CCTC	2 cut(s)	140, 143
MspR9I	CCNGG	3 cut(s)	156, 165, 332
MvaI	CCWGG	3 cut(s)	156, 165, 332
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	1 cut(s)	405
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	2 cut(s)	81, 82
NmeAIII	GCCGAG	2 cut(s)	48, 114
NspI	RCATGY	1 cut(s)	172
PaeI	GCATGC	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	117, 216
PkrI	GCNGC	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
Psp6I	CCWGG	3 cut(s)	154, 163, 330
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	3 cut(s)	154, 163, 330
PspN4I	GGNNCC	2 cut(s)	81, 82
PspPI	GGNCC	2 cut(s)	80, 152
PspPPI	RGGWCCY	1 cut(s)	80
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	12
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	405
Sau96I	GGNCC	2 cut(s)	80, 152
ScaI	AGTACT	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	156, 165, 332
SduI	GDGCHC	1 cut(s)	24
SetI	ASST	4 cut(s)	45, 78, 363, 394
SfaNI	GCATC	1 cut(s)	132
SinI	GGWCC	2 cut(s)	80, 152
SphI	GCATGC	1 cut(s)	172
Sse9I	AATT	1 cut(s)	147
SsiI	CCGC	2 cut(s)	84, 138
StyD4I	CCNGG	3 cut(s)	154, 163, 330
TaqI	TCGA	1 cut(s)	408
TasI	AATT	1 cut(s)	147
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	117, 216
TspDTI	ATGAA	2 cut(s)	27, 351
VpaK11BI	GGWCC	2 cut(s)	80, 152
XceI	RCATGY	1 cut(s)	172
ZrmI	AGTACT	1 cut(s)	266

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.