Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010368

Physical Location & Seq

Genomic Coordinates Forward (+)

34067551 .. 34067811

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1234100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGCAACAGGGGGAGCAGAGAAGATGATGGAGGAGACGGGAAGGGTTTGTCGTGGAAGCTCCCAGTCCTCGGAACCCAGCAACTAGGGAAGGTAGGTCCCGCATTCGGCCTCGGCACTAGCTGCGACTTGGGTTTCGACATCGGCCTCCTTGGCTGCGCAAGATTTGGTCCTGGGATCTCTGGCTTGCAAGTTGTTCTGAGCCTTGGCGCTGGATGTGGGGTCTGCTTAGGATTCGGCGTCGCGATTCAGAAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

87

Amino Acids

8.54

Weight (kDa)

6.13

Isoelectric Point (pI)

24.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010368)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10330
fragaria_vesca	FvH4_2g00130
malus_domestica	MD00G1103300.v1.1 MD02G1202800.v1.1 MD05G1000400.v1.1 MD11G1234100.v1.1
prunus_persica	Prupe.8G001100_v2.0.a1
pyrus_communis	pycom10g00020 pycom215g00060
rosa_chinensis	RchiOBHm_Chr6g0249391
rosa_laevigata	RLG00000015584 RLG00000026303
rosa_multiflora	Rmu_sc0000278.1_g000004 Rmu_sc0018750.1_g000001
rosa_roxburghii	Rroxscaffold_7G00217770
rosa_rugosa	Rorug05G0491900
rosa_samantha	Rh6AG001700 Rh6BG008400 Rh6CG000700 Rh6DG000800
rosa_wichuraiana	Rw6G000230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	160
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	1 cut(s)	185
AcyI	GRCGYC	1 cut(s)	240
AfiI	CCNNNNNNNGG	2 cut(s)	71, 107
AjnI	CCWGG	1 cut(s)	172
AluBI	AGCT	2 cut(s)	61, 123
AluI	AGCT	2 cut(s)	61, 123
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	2 cut(s)	109, 145
ApeKI	GCWGC	2 cut(s)	123, 156
ArsI	GACNNNNNNTTYG	2 cut(s)	119, 151
AspLEI	GCGC	2 cut(s)	161, 212
AspS9I	GGNCC	2 cut(s)	98, 170
AvaII	GGWCC	2 cut(s)	98, 170
BbvI	GCAGC	2 cut(s)	110, 143
BccI	CCATC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	2 cut(s)	86, 120
BfoI	RGCGCY	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	153
BisI	GCNGC	2 cut(s)	124, 157
BlsI	GCNGC	2 cut(s)	125, 158
Bme1390I	CCNGG	1 cut(s)	174
Bme18I	GGWCC	2 cut(s)	98, 170
BmgT120I	GGNCC	2 cut(s)	98, 170
BmiI	GGNNCC	2 cut(s)	76, 100
BmrFI	CCNGG	1 cut(s)	174
BmrI	ACTGGG	1 cut(s)	59
BmuI	ACTGGG	1 cut(s)	59
Bpu10I	CCTNAGC	1 cut(s)	229
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	5 cut(s)	70, 112, 151, 173, 205
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 107
Bse1I	ACTGG	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	174
BseDI	CCNNGG	5 cut(s)	70, 112, 151, 173, 205
BseGI	GGATG	1 cut(s)	221
BseLI	CCNNNNNNNGG	2 cut(s)	71, 107
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	1 cut(s)	65
BseRI	GAGGAG	1 cut(s)	48
BseXI	GCAGC	2 cut(s)	110, 143
BseYI	CCCAGC	1 cut(s)	78
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	2 cut(s)	111, 147
BslFI	GGGAC	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	71, 107
BsmAI	GTCTC	1 cut(s)	30
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	84
BsmI	GAATGC	1 cut(s)	104
BsnI	GGCC	2 cut(s)	111, 147
Bsp143I	GATC	1 cut(s)	177
Bsp68I	TCGCGA	1 cut(s)	245
BspACI	CCGC	1 cut(s)	102
BspANI	GGCC	2 cut(s)	111, 147
BspCNI	CTCAG	1 cut(s)	192
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	2 cut(s)	76, 100
BspPI	GGATC	1 cut(s)	185
BsrI	ACTGG	1 cut(s)	65
BssECI	CCNNGG	5 cut(s)	70, 112, 151, 173, 205
BssMI	GATC	1 cut(s)	177
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	151, 205
Bst2UI	CCWGG	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	240
BstAPI	GCANNNNNTGC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	2 cut(s)	200, 229
BstF5I	GGATG	1 cut(s)	221
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	161, 212
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	123, 153
BstNI	CCWGG	1 cut(s)	174
BstSCI	CCNGG	1 cut(s)	172
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	110, 143
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BsuRI	GGCC	2 cut(s)	111, 147
BtsCI	GGATG	1 cut(s)	221
BtuMI	TCGCGA	1 cut(s)	245
Cac8I	GCNNGC	1 cut(s)	188
CfoI	GCGC	2 cut(s)	161, 212
Cfr13I	GGNCC	2 cut(s)	98, 170
CseI	GACGC	1 cut(s)	229
CviJI	RGCY	7 cut(s)	61, 111, 123, 147, 156, 186, 204
CviKI_1	RGCY	7 cut(s)	61, 111, 123, 147, 156, 186, 204
DdeI	CTNAG	2 cut(s)	200, 229
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	151, 205
Eco47I	GGWCC	2 cut(s)	98, 170
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	151, 205
ErhI	CCWWGG	2 cut(s)	151, 205
Esp3I	CGTCTC	1 cut(s)	30
FaqI	GGGAC	1 cut(s)	84
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	2 cut(s)	124, 157
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	124, 157
FspBI	CTAG	2 cut(s)	86, 120
FspI	TGCGCA	1 cut(s)	160
GlaI	GCGC	2 cut(s)	160, 211
GluI	GCNGC	2 cut(s)	124, 157
GsaI	CCCAGC	1 cut(s)	82
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	2 cut(s)	111, 147
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	161, 212
Hin1I	GRCGYC	1 cut(s)	240
Hin6I	GCGC	2 cut(s)	159, 210
HinP1I	GCGC	2 cut(s)	159, 210
HinfI	GANTC	2 cut(s)	234, 247
Hpy188I	TCNGA	3 cut(s)	74, 201, 252
Hpy188III	TCNNGA	1 cut(s)	244
Hpy99I	CGWCG	1 cut(s)	245
HpyAV	CCTTC	2 cut(s)	37, 85
HpyCH4V	TGCA	1 cut(s)	190
HpyF10VI	GCNNNNNNNGC	2 cut(s)	123, 153
HpyF3I	CTNAG	2 cut(s)	200, 229
Hsp92I	GRCGYC	1 cut(s)	240
HspAI	GCGC	2 cut(s)	159, 210
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	2 cut(s)	15, 66
LpnPI	CCDG	6 cut(s)	78, 92, 159, 168, 186, 198
Lsp1109I	GCAGC	2 cut(s)	110, 143
MaeI	CTAG	2 cut(s)	86, 120
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	1 cut(s)	35
MflI	RGATCY	1 cut(s)	177
MnlI	CCTC	4 cut(s)	26, 80, 122, 158
MspR9I	CCNGG	1 cut(s)	174
Mva1269I	GAATGC	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	174
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	123, 153
NdeII	GATC	1 cut(s)	177
NlaIV	GGNNCC	2 cut(s)	76, 100
NmeAIII	GCCGAG	1 cut(s)	93
NruI	TCGCGA	1 cut(s)	245
NsbI	TGCGCA	1 cut(s)	160
PctI	GAATGC	1 cut(s)	104
PfeI	GAWTC	2 cut(s)	234, 247
PkrI	GCNGC	2 cut(s)	125, 158
PpuMI	RGGWCCY	1 cut(s)	98
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	172
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	172
PspN4I	GGNNCC	2 cut(s)	76, 100
PspPI	GGNCC	2 cut(s)	98, 170
PspPPI	RGGWCCY	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	177
RruI	TCGCGA	1 cut(s)	245
SatI	GCNGC	2 cut(s)	124, 157
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	98, 170
ScrFI	CCNGG	1 cut(s)	174
SetI	ASST	4 cut(s)	63, 96, 100, 125
SinI	GGWCC	2 cut(s)	98, 170
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	86, 120
StyD4I	CCNGG	1 cut(s)	172
StyI	CCWWGG	2 cut(s)	151, 205
TaqI	TCGA	1 cut(s)	138
TfiI	GAWTC	2 cut(s)	234, 247
TseI	GCWGC	2 cut(s)	123, 156
VpaK11BI	GGWCC	2 cut(s)	98, 170
XspI	CTAG	2 cut(s)	86, 120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.