Rw6G000230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0010368
Physical Location & Seq
Forward (+)
481817 .. 483381
1565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G000230.1

Sequence Viewer

Length: 423 bp
ATGGCGAGGGATGAAGAGCACAAGGGTTTGTTGTGGAAGCTTCCAGTCATCAAAACCCAGCAACTCGGCAAGGTGGGTCCCGCCTTTGGCTTCGGCGTCGGCTGTGGTGTGGGATTCGGCATCGGCCTCCTCGGCGGCGTAGGAATTGGTCCTGGTATTCCTGGCATGCAAGTTGGTGTTGGTGTTGGTGCTGGATGTGGAGTTGGCTTCGGATTTGGCTATGGCGCTGGGAAGGGGGTTGTTCGTGATGACATCCGAAAGTACTCCAATGTTGGCAATCTCTTTTATGGTGAAAATGTTGGCAGTCGTTCTGGAAATCCTACTTCCCAGGATGAAATAGGCGCTCTTGTTGACGAGCTTGTTGATAATACTAGGAAACTGGTCAGAGCTACTACAAGGGAGATCGACAAGTGGACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.48

Weight (kDa)

8.97

Isoelectric Point (pI)

10.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 81, 135
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 86
AjnI CCWGG 3 cut(s) 151, 160, 327
AluBI AGCT 3 cut(s) 40, 358, 389
AluI AGCT 3 cut(s) 40, 358, 389
Alw21I GWGCWC 1 cut(s) 21
AoxI GGCC 1 cut(s) 124
AspLEI GCGC 2 cut(s) 227, 344
AspS9I GGNCC 2 cut(s) 77, 149
AsuHPI GGTGA 1 cut(s) 302
AvaII GGWCC 2 cut(s) 77, 149
Bbv12I GWGCWC 1 cut(s) 21
BciT130I CCWGG 3 cut(s) 153, 162, 329
BfaI CTAG 1 cut(s) 372
BfoI RGCGCY 2 cut(s) 228, 345
BglI GCCNNNNNGGC 1 cut(s) 132
BisI GCNGC 1 cut(s) 136
BlsI GCNGC 1 cut(s) 137
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 3 cut(s) 153, 162, 329
Bme18I GGWCC 2 cut(s) 77, 149
BmgT120I GGNCC 2 cut(s) 77, 149
BmiI GGNNCC 2 cut(s) 78, 79
BmrFI CCNGG 3 cut(s) 153, 162, 329
BmsI GCATC 1 cut(s) 129
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 130, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 44, 384
BseBI CCWGG 3 cut(s) 153, 162, 329
BseDI CCNNGG 2 cut(s) 130, 327
BseGI GGATG 4 cut(s) 16, 200, 252, 337
BseLI CCNNNNNNNGG 1 cut(s) 86
BseNI ACTGG 2 cut(s) 44, 384
BseRI GAGGAG 1 cut(s) 119
BseYI CCCAGC 2 cut(s) 57, 227
BshFI GGCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 21
BslFI GGGAC 1 cut(s) 63
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 63
BsnI GGCC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 1 cut(s) 402
BspACI CCGC 2 cut(s) 81, 135
BspANI GGCC 1 cut(s) 126
BspLI GGNNCC 2 cut(s) 78, 79
BspQI GCTCTTC 1 cut(s) 9
BsrI ACTGG 2 cut(s) 44, 384
BssECI CCNNGG 2 cut(s) 130, 327
BssMI GATC 1 cut(s) 402
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 3 cut(s) 153, 162, 329
Bst6I CTCTTC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 167
BstF5I GGATG 4 cut(s) 16, 200, 252, 337
BstH2I RGCGCY 2 cut(s) 228, 345
BstHHI GCGC 2 cut(s) 227, 344
BstKTI GATC 1 cut(s) 405
BstMBI GATC 1 cut(s) 402
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 3 cut(s) 153, 162, 329
BstNSI RCATGY 1 cut(s) 169
BstSCI CCNGG 3 cut(s) 151, 160, 327
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 4 cut(s) 16, 200, 252, 337
Cac8I GCNNGC 1 cut(s) 167
CfoI GCGC 2 cut(s) 227, 344
Cfr13I GGNCC 2 cut(s) 77, 149
CseI GACGC 1 cut(s) 85
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 166
CviJI RGCY 8 cut(s) 40, 90, 102, 126, 207, 219, 358, 389
CviKI_1 RGCY 8 cut(s) 40, 90, 102, 126, 207, 219, 358, 389
CviQI GTAC 1 cut(s) 262
DpnI GATC 1 cut(s) 404
DpnII GATC 1 cut(s) 402
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 77, 149
EcoO109I RGGNCCY 1 cut(s) 77
EcoRII CCWGG 3 cut(s) 151, 160, 327
FaeI CATG 1 cut(s) 169
FaiI YATR 3 cut(s) 167, 222, 288
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 165
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 1 cut(s) 136
FokI GGATG 4 cut(s) 23, 207, 239, 344
Fsp4HI GCNGC 1 cut(s) 136
FspBI CTAG 1 cut(s) 372
GlaI GCGC 2 cut(s) 226, 343
GluI GCNGC 1 cut(s) 136
GsaI CCCAGC 2 cut(s) 61, 231
HaeII RGCGCY 2 cut(s) 228, 345
HaeIII GGCC 1 cut(s) 126
HgaI GACGC 1 cut(s) 85
HhaI GCGC 2 cut(s) 227, 344
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 1 cut(s) 169
Hin6I GCGC 2 cut(s) 225, 342
HinP1I GCGC 2 cut(s) 225, 342
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 1 cut(s) 114
HphI GGTGA 1 cut(s) 302
Hpy166II GTNNAC 2 cut(s) 352, 414
Hpy188I TCNGA 3 cut(s) 212, 257, 386
Hpy188III TCNNGA 2 cut(s) 245, 312
Hpy8I GTNNAC 2 cut(s) 352, 414
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 1 cut(s) 169
HspAI GCGC 2 cut(s) 225, 342
KflI GGGWCCC 1 cut(s) 77
Kzo9I GATC 1 cut(s) 402
LguI GCTCTTC 1 cut(s) 9
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 372
MalI GATC 1 cut(s) 404
MboI GATC 1 cut(s) 402
MboII GAAGA 1 cut(s) 26
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 1 cut(s) 144
MnlI CCTC 2 cut(s) 137, 140
MspR9I CCNGG 3 cut(s) 153, 162, 329
MvaI CCWGG 3 cut(s) 153, 162, 329
MwoI GCNNNNNNNGC 1 cut(s) 132
NdeII GATC 1 cut(s) 402
NlaIII CATG 1 cut(s) 169
NlaIV GGNNCC 2 cut(s) 78, 79
NmeAIII GCCGAG 2 cut(s) 45, 111
NspI RCATGY 1 cut(s) 169
PaeI GCATGC 1 cut(s) 169
PciSI GCTCTTC 1 cut(s) 9
PfeI GAWTC 1 cut(s) 114
PkrI GCNGC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 77
Psp5II RGGWCCY 1 cut(s) 77
Psp6I CCWGG 3 cut(s) 151, 160, 327
PspFI CCCAGC 2 cut(s) 57, 227
PspGI CCWGG 3 cut(s) 151, 160, 327
PspN4I GGNNCC 2 cut(s) 78, 79
PspPI GGNCC 2 cut(s) 77, 149
PspPPI RGGWCCY 1 cut(s) 77
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SapI GCTCTTC 1 cut(s) 9
SatI GCNGC 1 cut(s) 136
Sau3AI GATC 1 cut(s) 402
Sau96I GGNCC 2 cut(s) 77, 149
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 3 cut(s) 153, 162, 329
SduI GDGCHC 1 cut(s) 21
SetI ASST 4 cut(s) 42, 75, 360, 391
SfaNI GCATC 1 cut(s) 129
SinI GGWCC 2 cut(s) 77, 149
SphI GCATGC 1 cut(s) 169
Sse9I AATT 1 cut(s) 144
SsiI CCGC 2 cut(s) 81, 135
SspMI CTAG 1 cut(s) 372
StyD4I CCNGG 3 cut(s) 151, 160, 327
TaqI TCGA 1 cut(s) 405
TasI AATT 1 cut(s) 144
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 138
TfiI GAWTC 1 cut(s) 114
TspDTI ATGAA 2 cut(s) 27, 348
VpaK11BI GGWCC 2 cut(s) 77, 149
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 372
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.