Prupe.8G001100_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0010368
Physical Location & Seq
Forward (+)
112089 .. 113752
1664 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G001100.1

Sequence Viewer

Length: 462 bp
ATGATGATGGGCAGGGGAGGCAGAGATAGAGAGGAAAGGGATGAGGAGGAGGGCAAGGGTTTGCTGTGGAAGCTTCCAGTTATCAAATCCCCGCAACTCGGGAAGGTGGGTCCCGCCTTTGGTGTCGGCGTTGGCTGTGGCTTGGGCTTCGGCGTCGGCCTCCTCGGCGGCTTAGGATTTGGTCCTGGGATTCCTGGCTTACAAATTGGCTTTGGCCTTGGTGCTGGATGTGGGGTCGGCTTAGGATTCGGCTACGGCGTCGGCAAGGGCATTGCTCATGATGACCATCGGAGATACTCTAATGTTGGCAATCTTTTTCAAGGAGCAAATGTTGGCATTTCTCGTGCTTCTGGAAATCTGCCTACTCAGGATGATATTGGTGCACTTGTTGAGGAGCTTGTTGATAATACAAAGAAACTTGTGAGAGCTACTACAAGAGAAATGGACAAGTGGAGAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

15.95

Weight (kDa)

9.03

Isoelectric Point (pI)

22.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 92, 114, 168
AcyI GRCGYC 2 cut(s) 153, 258
AfiI CCNNNNNNNGG 2 cut(s) 98, 119
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 2 cut(s) 184, 193
AluBI AGCT 3 cut(s) 73, 397, 428
AluI AGCT 3 cut(s) 73, 397, 428
Alw21I GWGCWC 1 cut(s) 385
Alw44I GTGCAC 1 cut(s) 381
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 2 cut(s) 157, 214
ApaLI GTGCAC 1 cut(s) 381
AspS9I GGNCC 2 cut(s) 110, 182
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 2 cut(s) 110, 182
BaeGI GKGCMC 1 cut(s) 385
BauI CACGAG 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 385
BccI CCATC 1 cut(s) 294
BceAI ACGGC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 186, 195
BglI GCCNNNNNGGC 1 cut(s) 165
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme1390I CCNGG 2 cut(s) 186, 195
Bme18I GGWCC 2 cut(s) 110, 182
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 2 cut(s) 110, 182
BmiI GGNNCC 2 cut(s) 111, 112
BmrFI CCNGG 2 cut(s) 186, 195
Bpu10I CCTNAGC 2 cut(s) 172, 241
BsaBI GATNNNNATC 1 cut(s) 285
BsaHI GRCGYC 2 cut(s) 153, 258
BsaJI CCNNGG 3 cut(s) 163, 185, 217
BsaXI ACNNNNNCTCC 2 cut(s) 315, 345
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 119
Bse1I ACTGG 1 cut(s) 77
Bse3DI GCAATG 1 cut(s) 270
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 2 cut(s) 186, 195
BseDI CCNNGG 3 cut(s) 163, 185, 217
BseGI GGATG 3 cut(s) 46, 233, 376
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 2 cut(s) 98, 119
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 380
BseNI ACTGG 1 cut(s) 77
BseRI GAGGAG 4 cut(s) 59, 62, 152, 407
BseSI GKGCMC 1 cut(s) 385
BshFI GGCC 2 cut(s) 159, 216
BsiHKAI GWGCWC 1 cut(s) 385
BsiHKCI CYCGRG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 98, 119
BsmFI GGGAC 1 cut(s) 96
BsnI GGCC 2 cut(s) 159, 216
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 385
BspACI CCGC 3 cut(s) 92, 114, 168
BspANI GGCC 2 cut(s) 159, 216
BspCNI CTCAG 1 cut(s) 379
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 111, 112
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 1 cut(s) 77
BssECI CCNNGG 3 cut(s) 163, 185, 217
BssNI GRCGYC 2 cut(s) 153, 258
BssSI CACGAG 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 342
Bst2UI CCWGG 2 cut(s) 186, 195
BstACI GRCGYC 2 cut(s) 153, 258
BstDEI CTNAG 3 cut(s) 172, 241, 366
BstF5I GGATG 3 cut(s) 46, 233, 376
BstMWI GCNNNNNNNGC 3 cut(s) 18, 70, 165
BstNI CCWGG 2 cut(s) 186, 195
BstSCI CCNGG 2 cut(s) 184, 193
BstSLI GKGCMC 1 cut(s) 385
BsuRI GGCC 2 cut(s) 159, 216
BtsCI GGATG 3 cut(s) 46, 233, 376
CciI TCATGA 1 cut(s) 277
Cfr13I GGNCC 2 cut(s) 110, 182
CseI GACGC 2 cut(s) 142, 247
CviAII CATG 1 cut(s) 278
DdeI CTNAG 3 cut(s) 172, 241, 366
Eco130I CCWWGG 1 cut(s) 217
Eco47I GGWCC 2 cut(s) 110, 182
Eco88I CYCGRG 1 cut(s) 98
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 184, 193
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 281
FaiI YATR 1 cut(s) 279
FaqI GGGAC 1 cut(s) 96
FatI CATG 1 cut(s) 277
FauI CCCGC 2 cut(s) 99, 121
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 3 cut(s) 53, 240, 383
Fsp4HI GCNGC 1 cut(s) 169
GluI GCNGC 1 cut(s) 169
HaeIII GGCC 2 cut(s) 159, 216
HgaI GACGC 2 cut(s) 142, 247
Hin1I GRCGYC 2 cut(s) 153, 258
Hin1II CATG 1 cut(s) 281
HindIII AAGCTT 1 cut(s) 71
HinfI GANTC 2 cut(s) 190, 246
Hpy166II GTNNAC 1 cut(s) 383
Hpy188I TCNGA 1 cut(s) 291
Hpy188III TCNNGA 4 cut(s) 100, 278, 351, 368
Hpy8I GTNNAC 1 cut(s) 383
Hpy99I CGWCG 2 cut(s) 158, 263
HpyAV CCTTC 1 cut(s) 97
HpyCH4V TGCA 1 cut(s) 383
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 70, 165
HpyF3I CTNAG 3 cut(s) 172, 241, 366
Hsp92I GRCGYC 2 cut(s) 153, 258
Hsp92II CATG 1 cut(s) 281
KflI GGGWCCC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 323, 394
LpnPI CCDG 8 cut(s) 90, 171, 180, 198, 207, 210, 336, 353
MhlI GDGCHC 1 cut(s) 385
MluCI AATT 1 cut(s) 204
MnlI CCTC 8 cut(s) 11, 25, 37, 40, 43, 170, 173, 385
MspR9I CCNGG 2 cut(s) 186, 195
MvaI CCWGG 2 cut(s) 186, 195
MwoI GCNNNNNNNGC 3 cut(s) 18, 70, 165
NlaIII CATG 1 cut(s) 281
NlaIV GGNNCC 2 cut(s) 111, 112
NmeAIII GCCGAG 1 cut(s) 144
PagI TCATGA 1 cut(s) 277
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PfeI GAWTC 2 cut(s) 190, 246
PkrI GCNGC 1 cut(s) 170
PpuMI RGGWCCY 1 cut(s) 110
Psp5II RGGWCCY 1 cut(s) 110
Psp6I CCWGG 2 cut(s) 184, 193
PspGI CCWGG 2 cut(s) 184, 193
PspN4I GGNNCC 2 cut(s) 111, 112
PspPI GGNCC 2 cut(s) 110, 182
PspPPI RGGWCCY 1 cut(s) 110
SatI GCNGC 1 cut(s) 169
Sau96I GGNCC 2 cut(s) 110, 182
ScrFI CCNGG 2 cut(s) 186, 195
SduI GDGCHC 1 cut(s) 385
SetI ASST 4 cut(s) 75, 108, 399, 430
SinI GGWCC 2 cut(s) 110, 182
Sse9I AATT 1 cut(s) 204
SsiI CCGC 3 cut(s) 92, 114, 168
StyD4I CCNGG 2 cut(s) 184, 193
StyI CCWWGG 1 cut(s) 217
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 171
TfiI GAWTC 2 cut(s) 190, 246
VneI GTGCAC 1 cut(s) 381
VpaK11BI GGWCC 2 cut(s) 110, 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.