AT4G10430

Transmembrane protein 120 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006071
Physical Location & Seq
Reverse (-)
6454703 .. 6458146
3444 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G10430.7

Sequence Viewer

Length: 1044 bp
ATGGAAGTTGAAGAAGAAGTTAAACAAATCATAGATGAGGTCAAAGAGCTTCATGACTCCGCCGCTTCTTTCATCTCATCTTCTTCTCAACAAGAGCTCTCTCTCCGTCAAAAAGCCTCCGCCGTTGATTCCTCTATCCGTCGTCTCCACTCTACTATCGTCTCCAACAAAAATCTCGATCCTAAGCTCGTCGAAAAGCTTGAGGAAGATCTGCATCGTGCTAGATGCATGCTTGTTGACGGAGAAACATCTTCATTTCTCCCATCCAAACCACAAGGACGCTTTGTGAGAATGTTTTGTGGACCTGTGAATGTTCGAGCTTTGCGTAAAGATGTTCAGCTTAAAGTTAAAGAAGAATACAATCGTTACAGAGACAAGACTGCTCTTCTTTTTCTTTTTTTCCCTGCCACACTTTTAATCCTTAGGTCTTATTATTGGGGTGGATGTTTGCCTGCGTTTCCTGTCCAGCTCTATGAGGCTTGGCTGTTGTTTCTCTATGCTGGGTTGGCTATGCGTGAGAATATATTAAGAGCTAACGGAAGCGATATTCGTCCATGGTGGCTATATCATCATTATTGTGCCATGGCTATGGCCCTTGTCAGCCTCACATGGGAAATCAAAGGTCAACCAAACTGTGTCCAGAAACAGAGAGGAGTCCATCTTTTCCTACAATGGGCTATGATGCAAGGTGTCGCCATGCTTTTACAAAACAGATATCAACGCCAAAGATTATACACTCGCATTGCACTAGGAAAGGCTAAGAGAATGGATGTTGTTTGGGGAGAAACGGCTGGAGTTGATGGACAACTATGGCTGTTATGTCCTATACTGTTCATTTTACAGGTGTTTGAAGCATACGTTGGACTGCTGTTGCTAAGAAAAACAGTAACTGGAGTTGTTAATGAATGGCAGGTGATGGTTTGTGGGATTCTTCTGGTAGTGATGGCAGTTGGGAACTTCATAAATACAGTAGAGACACTGATGGCAAAGTCAAGAGTTAAGGCAAAGATGAAGAGAAGTAAAAGCAGAGCAGAGCTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMPIT

Protein Analysis

347

Amino Acids

39.89

Weight (kDa)

9.5

Isoelectric Point (pI)

43.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM120A-B PF07851 5 - 283 4.4e-82 TMEM120A/B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 901
Acc36I ACCTGC 1 cut(s) 901
AciI CCGC 3 cut(s) 60, 63, 120
AclWI GGATC 1 cut(s) 173
AfiI CCNNNNNNNGG 2 cut(s) 610, 673
AgsI TTSAA 2 cut(s) 11, 851
AjuI GAANNNNNNNTTGG 2 cut(s) 843, 875
AluBI AGCT 9 cut(s) 49, 97, 187, 199, 320, 340, 469, 533, 1036
AluI AGCT 9 cut(s) 49, 97, 187, 199, 320, 340, 469, 533, 1036
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 4 cut(s) 149, 166, 366, 968
AlwI GGATC 1 cut(s) 173
AlwNI CAGNNNCTG 1 cut(s) 890
AoxI GGCC 1 cut(s) 591
AspS9I GGNCC 2 cut(s) 302, 592
AsuHPI GGTGA 1 cut(s) 925
AvaII GGWCC 1 cut(s) 302
AxyI CCTNAGG 1 cut(s) 422
BanII GRGCYC 1 cut(s) 99
Bbv12I GWGCWC 1 cut(s) 99
BccI CCATC 6 cut(s) 271, 666, 794, 910, 937, 976
BceAI ACGGC 2 cut(s) 107, 804
BcoDI GTCTC 4 cut(s) 149, 166, 366, 968
BfaI CTAG 2 cut(s) 222, 749
BfuAI ACCTGC 1 cut(s) 901
BglII AGATCT 1 cut(s) 208
BisI GCNGC 1 cut(s) 63
BlsI GCNGC 1 cut(s) 64
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 302, 592
BmsI GCATC 3 cut(s) 215, 223, 672
BpmI CTGGAG 2 cut(s) 813, 912
Bpu10I CCTNAGC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 2 cut(s) 554, 582
Bsc4I CCNNNNNNNGG 2 cut(s) 610, 673
Bse1I ACTGG 1 cut(s) 895
Bse21I CCTNAGG 1 cut(s) 422
Bse3DI GCAATG 1 cut(s) 741
Bse8I GATNNNNATC 1 cut(s) 213
BseDI CCNNGG 2 cut(s) 554, 582
BseGI GGATG 3 cut(s) 263, 449, 775
BseJI GATNNNNATC 1 cut(s) 213
BseLI CCNNNNNNNGG 2 cut(s) 610, 673
BseMI GCAATG 1 cut(s) 741
BseNI ACTGG 1 cut(s) 895
BseRI GAGGAG 1 cut(s) 666
BseYI CCCAGC 1 cut(s) 500
BshFI GGCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 99
BslI CCNNNNNNNGG 2 cut(s) 610, 673
BsmAI GTCTC 4 cut(s) 149, 166, 366, 968
BsmBI CGTCTC 2 cut(s) 149, 166
BsnI GGCC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 178, 208
Bsp19I CCATGG 2 cut(s) 554, 582
BspACI CCGC 3 cut(s) 60, 63, 120
BspANI GGCC 1 cut(s) 593
BspHI TCATGA 1 cut(s) 52
BspMI ACCTGC 1 cut(s) 901
BspPI GGATC 1 cut(s) 173
BspQI GCTCTTC 1 cut(s) 390
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 1 cut(s) 895
BssECI CCNNGG 2 cut(s) 554, 582
BssMI GATC 2 cut(s) 178, 208
BssT1I CCWWGG 2 cut(s) 554, 582
Bst4CI ACNGT 4 cut(s) 635, 831, 886, 970
Bst6I CTCTTC 2 cut(s) 390, 1007
BstC8I GCNNGC 2 cut(s) 230, 453
BstDEI CTNAG 4 cut(s) 183, 422, 759, 875
BstDSI CCRYGG 2 cut(s) 554, 582
BstF5I GGATG 3 cut(s) 263, 449, 775
BstKTI GATC 2 cut(s) 181, 211
BstMAI GTCTC 4 cut(s) 149, 166, 366, 968
BstMBI GATC 2 cut(s) 178, 208
BstMWI GCNNNNNNNGC 1 cut(s) 506
BstNSI RCATGY 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 589
BstYI RGATCY 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 422
BsuRI GGCC 1 cut(s) 593
BtgI CCRYGG 2 cut(s) 554, 582
BtsCI GGATG 3 cut(s) 263, 449, 775
BtsIMutI CAGTG 1 cut(s) 977
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 2 cut(s) 230, 453
CaiI CAGNNNCTG 1 cut(s) 890
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 2 cut(s) 302, 592
CseI GACGC 1 cut(s) 288
CviAII CATG 6 cut(s) 53, 229, 555, 583, 609, 697
DdeI CTNAG 4 cut(s) 183, 422, 759, 875
DpnI GATC 2 cut(s) 180, 210
DpnII GATC 2 cut(s) 178, 208
Eam1104I CTCTTC 2 cut(s) 390, 1007
EarI CTCTTC 2 cut(s) 390, 1007
EciI GGCGGA 2 cut(s) 49, 109
Ecl136II GAGCTC 1 cut(s) 97
Eco130I CCWWGG 2 cut(s) 554, 582
Eco24I GRGCYC 1 cut(s) 99
Eco32I GATATC 1 cut(s) 716
Eco47I GGWCC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 97
Eco81I CCTNAGG 1 cut(s) 422
EcoICRI GAGCTC 1 cut(s) 97
EcoRV GATATC 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 554, 582
EcoT22I ATGCAT 1 cut(s) 230
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 554, 582
Esp3I CGTCTC 2 cut(s) 149, 166
FaeI CATG 6 cut(s) 56, 232, 558, 586, 612, 700
FatI CATG 6 cut(s) 52, 228, 554, 582, 608, 696
Fnu4HI GCNGC 1 cut(s) 63
FokI GGATG 3 cut(s) 250, 456, 782
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 1 cut(s) 63
FspBI CTAG 2 cut(s) 222, 749
GluI GCNGC 1 cut(s) 63
GsaI CCCAGC 1 cut(s) 504
GsuI CTGGAG 2 cut(s) 813, 912
HaeIII GGCC 1 cut(s) 593
HgaI GACGC 1 cut(s) 288
Hin1II CATG 6 cut(s) 56, 232, 558, 586, 612, 700
HincII GTYRAC 2 cut(s) 238, 626
HindII GTYRAC 2 cut(s) 238, 626
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 4 cut(s) 56, 128, 654, 928
HphI GGTGA 1 cut(s) 925
Hpy166II GTNNAC 3 cut(s) 238, 302, 626
Hpy188III TCNNGA 4 cut(s) 53, 176, 640, 993
Hpy8I GTNNAC 3 cut(s) 238, 302, 626
Hpy99I CGWCG 2 cut(s) 144, 194
HpyCH4III ACNGT 4 cut(s) 635, 831, 886, 970
HpyCH4IV ACGT 1 cut(s) 858
HpyCH4V TGCA 4 cut(s) 214, 228, 685, 746
HpyF10VI GCNNNNNNNGC 1 cut(s) 506
HpyF3I CTNAG 4 cut(s) 183, 422, 759, 875
HpySE526I ACGT 1 cut(s) 858
Hsp92II CATG 6 cut(s) 56, 232, 558, 586, 612, 700
Kzo9I GATC 2 cut(s) 178, 208
LguI GCTCTTC 1 cut(s) 390
LweI GCATC 3 cut(s) 215, 223, 672
MaeI CTAG 2 cut(s) 222, 749
MaeII ACGT 1 cut(s) 858
MaeIII GTNAC 2 cut(s) 365, 886
MalI GATC 2 cut(s) 180, 210
MboI GATC 2 cut(s) 178, 208
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 1 cut(s) 1039
MlyI GAGTC 2 cut(s) 50, 663
MmeI TCCRAC 2 cut(s) 189, 841
MnlI CCTC 7 cut(s) 31, 127, 142, 196, 469, 614, 644
Mph1103I ATGCAT 1 cut(s) 230
MseI TTAA 8 cut(s) 21, 342, 348, 416, 527, 900, 999, 1038
MslI CAYNNNNRTG 2 cut(s) 576, 587
MwoI GCNNNNNNNGC 1 cut(s) 506
NcoI CCATGG 2 cut(s) 554, 582
NdeII GATC 2 cut(s) 178, 208
NlaIII CATG 6 cut(s) 56, 232, 558, 586, 612, 700
NsiI ATGCAT 1 cut(s) 230
NspI RCATGY 1 cut(s) 232
PaeI GCATGC 1 cut(s) 232
PagI TCATGA 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 901
PciSI GCTCTTC 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 322
PfeI GAWTC 2 cut(s) 128, 928
PkrI GCNGC 1 cut(s) 64
PleI GAGTC 2 cut(s) 50, 662
PpsI GAGTC 2 cut(s) 50, 662
Psp124BI GAGCTC 1 cut(s) 99
PspFI CCCAGC 1 cut(s) 500
PspPI GGNCC 2 cut(s) 302, 592
PstNI CAGNNNCTG 1 cut(s) 890
PsuI RGATCY 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 576, 587
SacI GAGCTC 1 cut(s) 99
SapI GCTCTTC 1 cut(s) 390
SaqAI TTAA 8 cut(s) 21, 342, 348, 416, 527, 900, 999, 1038
SatI GCNGC 1 cut(s) 63
Sau3AI GATC 2 cut(s) 178, 208
Sau96I GGNCC 2 cut(s) 302, 592
SchI GAGTC 2 cut(s) 50, 663
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 3 cut(s) 215, 223, 672
SinI GGWCC 1 cut(s) 302
SmiMI CAYNNNNRTG 2 cut(s) 576, 587
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SphI GCATGC 1 cut(s) 232
Sse9I AATT 1 cut(s) 1039
SsiI CCGC 3 cut(s) 60, 63, 120
SspMI CTAG 2 cut(s) 222, 749
SstI GAGCTC 1 cut(s) 99
StyI CCWWGG 2 cut(s) 554, 582
TaaI ACNGT 4 cut(s) 635, 831, 886, 970
TaiI ACGT 1 cut(s) 861
TaqI TCGA 3 cut(s) 177, 192, 316
TasI AATT 1 cut(s) 1039
TauI GCSGC 1 cut(s) 65
TfiI GAWTC 2 cut(s) 128, 928
Tru1I TTAA 8 cut(s) 21, 342, 348, 416, 527, 900, 999, 1038
Tru9I TTAA 8 cut(s) 21, 342, 348, 416, 527, 900, 999, 1038
TscAI CASTG 1 cut(s) 984
TspDTI ATGAA 7 cut(s) 41, 61, 243, 823, 918, 949, 1025
TspGWI ACGGA 4 cut(s) 95, 128, 255, 552
TspRI CASTG 1 cut(s) 984
VpaK11BI GGWCC 1 cut(s) 302
XceI RCATGY 1 cut(s) 232
XspI CTAG 2 cut(s) 222, 749
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.