Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000422.1

Orthogroup ID

OG0006071

Physical Location & Seq

Genomic Coordinates Forward (+)

125004 .. 129442

Gene Structure 4439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000422.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgggagacgatgcgcagaagaagagctctggttctctggacgccctacaagctgaagtcaccaaggccatggagggcgccaagtcgttacaggactcggcttcctccttcatctccagaaactccagcgaggaacagtcgcttcgcctgcgagcccagtctctcgattccacaatccgccgcctccgttcccaaatctattctcttcaccatcacgacaacaaggccgtcgatcccaagctctgcgaaaagctggaagaagatttgcacagggccacgtgtgttttgacggacggcgacgccggttcttttcttcctcccaaagctcacggggggtttctgaggatgtttcttggccccatcaacgtgcgttcctctagcaaagacatccaactcaaggttaaagaggaatacaatgcttacagagatcgaactgccctgctattccttctctttccatttgcactacttattctgagatcttggatatgggatggatgcttgccaacatttcctgttcaagcttaccaggcatggctcttattcctctacactggtttgtcattgcgagaaaatatactgagagtaaacggaagtgatattcgtccatggtggatataccatcactattgtgctatgtttatggccatggttagtctcacatgggacattcaaggacaaccaaattgtgcccaaaagcagagaggggtggaacttttcctgcaatgggcaatgatgcaaggagtggctatgcttttacaaaatagatatcaacgccagagactgtatactcgaattgcattgggaaaggccaataggatggacgtcgtatggggtgaaacagctggtgttgatggtcaattgtggcttctatgtcccatactttttataatgcagggttttgaggcgtatgttggactacagttgcttaagactgctttgttcggggatgttaccgaatggcaggtgagtttgtgcggtgtgctattaattcttatggcgatcgggaactttgtaaatactgtacagacactcatggtgaaatcaaggttcaaggcaaagatgaaaaagaccaagagcaagcaggaattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMPIT

Protein Analysis

364

Amino Acids

41.47

Weight (kDa)

9.24

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33230 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430
fragaria_vesca	FvH4_5g10150 FvH4_5g10150
malus_domestica	MD06G1127700.v1.1 MD14G1143500.v1.1
prunus_persica	Prupe.5G137500_v2.0.a1
pyrus_communis	pycom06g11780 pycom14g11890
rosa_chinensis	RchiOBHm_Chr7g0188151
rosa_laevigata	RLG00000004724
rosa_multiflora	Rmu_ssc0000422.1_g000025
rosa_roxburghii	Rroxscaffold_3G00266730
rosa_rugosa	Rorug06G0488500
rosa_samantha	Rh7AG092800 Rh7BG094400 Rh7CG094100 Rh7DG094800
rosa_wichuraiana	Rw7G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	890
AarI	CACCTGC	1 cut(s)	955
AatII	GACGTC	1 cut(s)	828
Acc16I	TGCGCA	1 cut(s)	15
Acc36I	ACCTGC	1 cut(s)	955
AccB1I	GGYRCC	1 cut(s)	77
AccI	GTMKAC	1 cut(s)	788
AciI	CCGC	3 cut(s)	178, 181, 978
AclWI	GGATC	1 cut(s)	227
AcoI	YGGCCR	1 cut(s)	645
AcuI	CTGAAG	1 cut(s)	75
AcvI	CACGTG	1 cut(s)	279
AcyI	GRCGYC	4 cut(s)	42, 78, 300, 825
AfaI	GTAC	1 cut(s)	1026
AfiI	CCNNNNNNNGG	2 cut(s)	397, 727
AflII	CTTAAG	1 cut(s)	929
AflIII	ACRYGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	521, 674, 1054
AjnI	CCWGG	1 cut(s)	528
AleI	CACNNNNGTG	1 cut(s)	630
AluBI	AGCT	7 cut(s)	27, 53, 241, 253, 326, 524, 845
AluI	AGCT	7 cut(s)	27, 53, 241, 253, 326, 524, 845
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	165, 662, 775
AlwI	GGATC	1 cut(s)	227
AlwNI	CAGNNNCTG	1 cut(s)	784
AoxI	GGCC	6 cut(s)	66, 225, 273, 355, 645, 810
AseI	ATTAAT	1 cut(s)	989
AspLEI	GCGC	2 cut(s)	16, 80
AspS9I	GGNCC	2 cut(s)	273, 356
AsuHPI	GGTGA	5 cut(s)	52, 200, 848, 979, 1051
BaeGI	GKGCMC	1 cut(s)	694
BalI	TGGCCA	1 cut(s)	647
BanI	GGYRCC	1 cut(s)	77
BanII	GRGCYC	2 cut(s)	29, 157
BbrPI	CACGTG	1 cut(s)	279
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	6 cut(s)	219, 368, 488, 630, 814, 848
BceAI	ACGGC	2 cut(s)	212, 310
BciT130I	CCWGG	1 cut(s)	530
BcoDI	GTCTC	3 cut(s)	165, 662, 775
BfaI	CTAG	1 cut(s)	378
BfmI	CTRYAG	1 cut(s)	920
BfoI	RGCGCY	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	929
BfuAI	ACCTGC	1 cut(s)	955
BglII	AGATCT	1 cut(s)	479
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
Bme1390I	CCNGG	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	273, 356
BmiI	GGNNCC	2 cut(s)	79, 358
BmrFI	CCNGG	1 cut(s)	530
BmrI	ACTGGG	1 cut(s)	151
BmsI	GCATC	2 cut(s)	488, 726
BmuI	ACTGGG	1 cut(s)	151
BpmI	CTGGAG	2 cut(s)	100, 109
BpuEI	CTTGAG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	279
BsaHI	GRCGYC	4 cut(s)	42, 78, 300, 825
BsaJI	CCNNGG	4 cut(s)	63, 69, 608, 648
Bsc4I	CCNNNNNNNGG	2 cut(s)	397, 727
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	2 cut(s)	157, 559
Bse3DI	GCAATG	3 cut(s)	563, 731, 738
BseBI	CCWGG	1 cut(s)	530
BseDI	CCNNGG	4 cut(s)	63, 69, 608, 648
BseGI	GGATG	6 cut(s)	351, 387, 499, 503, 825, 955
BseLI	CCNNNNNNNGG	2 cut(s)	397, 727
BseMI	GCAATG	3 cut(s)	563, 731, 738
BseMII	CTCAG	3 cut(s)	332, 467, 572
BseNI	ACTGG	2 cut(s)	157, 559
BseSI	GKGCMC	1 cut(s)	694
Bsh1285I	CGRYCG	1 cut(s)	1005
BshFI	GGCC	6 cut(s)	68, 227, 275, 357, 647, 812
BshNI	GGYRCC	1 cut(s)	77
BsiEI	CGRYCG	1 cut(s)	1005
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	303
BslFI	GGGAC	2 cut(s)	680, 861
BslI	CCNNNNNNNGG	2 cut(s)	397, 727
BsmAI	GTCTC	3 cut(s)	165, 662, 775
BsmFI	GGGAC	2 cut(s)	680, 861
BsnI	GGCC	6 cut(s)	68, 227, 275, 357, 647, 812
Bsp1286I	GDGCHC	3 cut(s)	29, 157, 694
Bsp1407I	TGTACA	1 cut(s)	1024
Bsp143I	GATC	4 cut(s)	232, 427, 479, 1002
Bsp19I	CCATGG	3 cut(s)	69, 608, 648
BspACI	CCGC	3 cut(s)	178, 181, 978
BspANI	GGCC	6 cut(s)	68, 227, 275, 357, 647, 812
BspCNI	CTCAG	3 cut(s)	333, 468, 573
BspLI	GGNNCC	2 cut(s)	79, 358
BspMI	ACCTGC	1 cut(s)	955
BspPI	GGATC	1 cut(s)	227
BspQI	GCTCTTC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	77
BspTI	CTTAAG	1 cut(s)	929
BsrDI	GCAATG	3 cut(s)	563, 731, 738
BsrFI	RCCGGY	1 cut(s)	302
BsrGI	TGTACA	1 cut(s)	1024
BsrI	ACTGG	2 cut(s)	157, 559
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	4 cut(s)	63, 69, 608, 648
BssMI	GATC	4 cut(s)	232, 427, 479, 1002
BssNAI	GTATAC	1 cut(s)	789
BssNI	GRCGYC	4 cut(s)	42, 78, 300, 825
BssT1I	CCWWGG	4 cut(s)	63, 69, 608, 648
Bst1107I	GTATAC	1 cut(s)	789
Bst2UI	CCWGG	1 cut(s)	530
Bst4CI	ACNGT	4 cut(s)	138, 786, 924, 1024
Bst6I	CTCTTC	2 cut(s)	17, 210
BstACI	GRCGYC	4 cut(s)	42, 78, 300, 825
BstAFI	CTTAAG	1 cut(s)	929
BstAUI	TGTACA	1 cut(s)	1024
BstBAI	YACGTR	1 cut(s)	279
BstC8I	GCNNGC	4 cut(s)	149, 153, 503, 1082
BstDEI	CTNAG	3 cut(s)	341, 476, 581
BstDSI	CCRYGG	3 cut(s)	69, 608, 648
BstF5I	GGATG	6 cut(s)	351, 387, 499, 503, 825, 955
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	2 cut(s)	16, 80
BstKTI	GATC	4 cut(s)	235, 430, 482, 1005
BstMAI	GTCTC	3 cut(s)	165, 662, 775
BstMBI	GATC	4 cut(s)	232, 427, 479, 1002
BstMCI	CGRYCG	1 cut(s)	1005
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 148, 530
BstNI	CCWGG	1 cut(s)	530
BstSCI	CCNGG	1 cut(s)	528
BstSFI	CTRYAG	1 cut(s)	920
BstSLI	GKGCMC	1 cut(s)	694
BstX2I	RGATCY	1 cut(s)	479
BstXI	CCANNNNNNTGG	2 cut(s)	70, 820
BstYI	RGATCY	1 cut(s)	479
BstZ17I	GTATAC	1 cut(s)	789
BsuRI	GGCC	6 cut(s)	68, 227, 275, 357, 647, 812
BtgI	CCRYGG	3 cut(s)	69, 608, 648
BtsCI	GGATG	6 cut(s)	351, 387, 499, 503, 825, 955
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	955
Cac8I	GCNNGC	4 cut(s)	149, 153, 503, 1082
CaiI	CAGNNNCTG	1 cut(s)	784
CfoI	GCGC	2 cut(s)	16, 80
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	2 cut(s)	273, 356
CseI	GACGC	2 cut(s)	50, 308
Csp6I	GTAC	1 cut(s)	1025
CviAII	CATG	6 cut(s)	70, 534, 609, 649, 663, 1036
CviQI	GTAC	1 cut(s)	1025
DdeI	CTNAG	3 cut(s)	341, 476, 581
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	4 cut(s)	234, 429, 481, 1004
DpnII	GATC	4 cut(s)	232, 427, 479, 1002
EaeI	YGGCCR	1 cut(s)	645
Eam1104I	CTCTTC	2 cut(s)	17, 210
EarI	CTCTTC	2 cut(s)	17, 210
EciI	GGCGGA	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	4 cut(s)	63, 69, 608, 648
Eco24I	GRGCYC	2 cut(s)	29, 157
Eco32I	GATATC	1 cut(s)	770
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	75
Eco72I	CACGTG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	528
EcoRV	GATATC	1 cut(s)	770
EcoT14I	CCWWGG	4 cut(s)	63, 69, 608, 648
EcoT38I	GRGCYC	2 cut(s)	29, 157
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	4 cut(s)	63, 69, 608, 648
FaeI	CATG	6 cut(s)	73, 537, 612, 652, 666, 1039
FaqI	GGGAC	2 cut(s)	680, 861
FatI	CATG	6 cut(s)	69, 533, 608, 648, 662, 1035
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	1 cut(s)	181
FokI	GGATG	6 cut(s)	358, 374, 506, 510, 832, 962
FriOI	GRGCYC	2 cut(s)	29, 157
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	378
FspI	TGCGCA	1 cut(s)	15
GlaI	GCGC	2 cut(s)	15, 79
GluI	GCNGC	1 cut(s)	181
GsuI	CTGGAG	2 cut(s)	100, 109
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	6 cut(s)	68, 227, 275, 357, 647, 812
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	2 cut(s)	50, 308
HhaI	GCGC	2 cut(s)	16, 80
Hin1I	GRCGYC	4 cut(s)	42, 78, 300, 825
Hin1II	CATG	6 cut(s)	73, 537, 612, 652, 666, 1039
Hin6I	GCGC	2 cut(s)	14, 78
HinP1I	GCGC	2 cut(s)	14, 78
HindIII	AAGCTT	1 cut(s)	522
HinfI	GANTC	2 cut(s)	95, 167
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	5 cut(s)	52, 200, 848, 979, 1051
Hpy166II	GTNNAC	2 cut(s)	589, 789
Hpy188I	TCNGA	2 cut(s)	342, 477
Hpy188III	TCNNGA	5 cut(s)	38, 117, 164, 215, 1006
Hpy8I	GTNNAC	2 cut(s)	589, 789
Hpy99I	CGWCG	3 cut(s)	233, 302, 830
HpyAV	CCTTC	2 cut(s)	118, 458
HpyCH4III	ACNGT	4 cut(s)	138, 786, 924, 1024
HpyCH4IV	ACGT	3 cut(s)	278, 366, 825
HpyCH4V	TGCA	6 cut(s)	268, 464, 724, 739, 800, 895
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 148, 530
HpyF3I	CTNAG	3 cut(s)	341, 476, 581
HpySE526I	ACGT	3 cut(s)	278, 366, 825
Hsp92I	GRCGYC	4 cut(s)	42, 78, 300, 825
Hsp92II	CATG	6 cut(s)	73, 537, 612, 652, 666, 1039
HspAI	GCGC	2 cut(s)	14, 78
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	4 cut(s)	232, 427, 479, 1002
LguI	GCTCTTC	1 cut(s)	17
LweI	GCATC	2 cut(s)	488, 726
MaeI	CTAG	1 cut(s)	378
MaeII	ACGT	3 cut(s)	278, 366, 825
MaeIII	GTNAC	3 cut(s)	58, 87, 952
MalI	GATC	4 cut(s)	234, 429, 481, 1004
MboI	GATC	4 cut(s)	232, 427, 479, 1002
MboII	GAAGA	6 cut(s)	31, 34, 197, 269, 272, 305
MfeI	CAATTG	1 cut(s)	860
MflI	RGATCY	1 cut(s)	479
MhlI	GDGCHC	3 cut(s)	29, 157, 694
MlsI	TGGCCA	1 cut(s)	647
MluCI	AATT	5 cut(s)	685, 795, 860, 990, 1088
MluNI	TGGCCA	1 cut(s)	647
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	415, 895
Mox20I	TGGCCA	1 cut(s)	647
MscI	TGGCCA	1 cut(s)	647
MseI	TTAA	3 cut(s)	402, 930, 989
MslI	CAYNNNNRTG	2 cut(s)	365, 630
Msp20I	TGGCCA	1 cut(s)	647
MspA1I	CMGCKG	1 cut(s)	845
MspCI	CTTAAG	1 cut(s)	929
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	1 cut(s)	530
MunI	CAATTG	1 cut(s)	860
MvaI	CCWGG	1 cut(s)	530
MwoI	GCNNNNNNNGC	3 cut(s)	50, 148, 530
NarI	GGCGCC	1 cut(s)	78
NcoI	CCATGG	3 cut(s)	69, 608, 648
NdeII	GATC	4 cut(s)	232, 427, 479, 1002
NlaIII	CATG	6 cut(s)	73, 537, 612, 652, 666, 1039
NlaIV	GGNNCC	2 cut(s)	79, 358
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	58
NsbI	TGCGCA	1 cut(s)	15
OliI	CACNNNNGTG	1 cut(s)	630
PaqCI	CACCTGC	1 cut(s)	955
PciSI	GCTCTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	1 cut(s)	182
Ple19I	CGATCG	1 cut(s)	1005
PleI	GAGTC	1 cut(s)	89
PluTI	GGCGCC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	279
PmlI	CACGTG	1 cut(s)	279
PpsI	GAGTC	1 cut(s)	89
Ppu21I	YACGTR	1 cut(s)	279
PshBI	ATTAAT	1 cut(s)	989
PsiI	TTATAA	1 cut(s)	890
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	528
PspCI	CACGTG	1 cut(s)	279
PspGI	CCWGG	1 cut(s)	528
PspN4I	GGNNCC	2 cut(s)	79, 358
PspPI	GGNCC	2 cut(s)	273, 356
PstNI	CAGNNNCTG	1 cut(s)	784
PsuI	RGATCY	1 cut(s)	479
PvuI	CGATCG	1 cut(s)	1005
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	1 cut(s)	1026
RsaNI	GTAC	1 cut(s)	1025
RseI	CAYNNNNRTG	2 cut(s)	365, 630
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	17
SaqAI	TTAA	3 cut(s)	402, 930, 989
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	4 cut(s)	232, 427, 479, 1002
Sau96I	GGNCC	2 cut(s)	273, 356
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	1 cut(s)	530
SduI	GDGCHC	3 cut(s)	29, 157, 694
SfaNI	GCATC	2 cut(s)	488, 726
SfcI	CTRYAG	1 cut(s)	920
SfoI	GGCGCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	2 cut(s)	365, 630
SmlI	CTYRAG	2 cut(s)	395, 929
SmoI	CTYRAG	2 cut(s)	395, 929
Sse9I	AATT	5 cut(s)	685, 795, 860, 990, 1088
SsiI	CCGC	3 cut(s)	178, 181, 978
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	1 cut(s)	378
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	528
StyI	CCWWGG	4 cut(s)	63, 69, 608, 648
TaaI	ACNGT	4 cut(s)	138, 786, 924, 1024
TaiI	ACGT	3 cut(s)	281, 369, 828
TaqI	TCGA	4 cut(s)	165, 231, 430, 793
TasI	AATT	5 cut(s)	685, 795, 860, 990, 1088
TatI	WGTACW	1 cut(s)	1024
TauI	GCSGC	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	167
Tru1I	TTAA	3 cut(s)	402, 930, 989
Tru9I	TTAA	3 cut(s)	402, 930, 989
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	58
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	2 cut(s)	100, 1079
TspGWI	ACGGA	3 cut(s)	176, 305, 606
TspRI	CASTG	1 cut(s)	559
Vha464I	CTTAAG	1 cut(s)	929
VspI	ATTAAT	1 cut(s)	989
XmiI	GTMKAC	1 cut(s)	788
XspI	CTAG	1 cut(s)	378
ZraI	GACGTC	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.