Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006071

Physical Location & Seq

Genomic Coordinates Forward (+)

16978973 .. 16983023

Gene Structure 4051 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g11780.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGGGGATGCGAAGAGGAACACTTCTTCTTCTTCCGGCAGTGACGAGGAGATACGAGCACAAGTGGCCAAGGCGGTGGAGGGGGTGAAGGAGCTGCAGGACTCAGCTGCCTCCTTCGTCTCCAGAGCCTCAGCCGACGAGCAATCCCTACGCCAGCGCGCCCAATCTCTCGATTCCTCCATCCGATGCCTCCGCTCCCAGCTTGATTCCCTGCTCTCCAGCAAGGCCTTGGATCCCAAGTTAGCAGAAAAGCTGGAAGAAGATTTGCAGAGGGCCACATGTGTGTTGGTGGATGGCGATGCCGCTTCGTTTCTTCCTGGGAAATCTCAGGGAGGGAGGTTTCTGAGGATGTTTCTCGGTCCTATCAACGTGCGTTCCTCTAGCAAAGATATCCGACTCAAGGTTAAAGAGGAATACAACGGTTACAGAGATAGAACTGCCCTTCTATTCCTTCTTTTCCCGGCAGCACTACTTATACTAAGATCTTGGATTTGGGATGGATGTTTGCCAGCGTTTCCAGTTCAGGCTTACCAGGCATGGCTGTTATTCCTCTACACTGGTTTGGCACTGCGTGAAAACATTTTGAGAGTAAATGGAAGTGATATTCGTCCATGGTGGATATACCATCACTATTGTGCTATGTTTATGGCCCTTGTTAGTCTCACATGGGAGATTAAAGGACAACCAAATTGTTCCCAAAAGCAGAGAGGTGTGCAATTTTTCCTACAATGGGCTATGATGCAAGGAGTCGCTATGCTTTTACAAAATAGATATCAACGCCAGAGACTCTATACTCGAATTGCATTGGGAAAGGCCAAAAGAATGGATGTGGTGTGGGGAGAAACAGCAGGCGTAGATGGTCAATTGTGGATTCTATGTCCAATACTATTTATTTTACAGGGTTTTGAGGCATATGTCGGAATACAGTTGCTTACGACTGCTTTTATTGGCGTTGCTTCGGAATGGCAGGTGAGTTTTTGCGGCGTACTGTTAATTTTAATGGCGGTTGGGAACTTTGTAAATACGGTAGAGACGCTTATGGTGAAGTCAAGGTTTAAGGCAAAGATGAAAAGAAGTAAGAGCAAGCAGGATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMPIT

Protein Analysis

366

Amino Acids

41.17

Weight (kDa)

9.48

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33230 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430
fragaria_vesca	FvH4_5g10150 FvH4_5g10150
malus_domestica	MD06G1127700.v1.1 MD14G1143500.v1.1
prunus_persica	Prupe.5G137500_v2.0.a1
pyrus_communis	pycom06g11780 pycom14g11890
rosa_chinensis	RchiOBHm_Chr7g0188151
rosa_laevigata	RLG00000004724
rosa_multiflora	Rmu_ssc0000422.1_g000025
rosa_roxburghii	Rroxscaffold_3G00266730
rosa_rugosa	Rorug06G0488500
rosa_samantha	Rh7AG092800 Rh7BG094400 Rh7CG094100 Rh7DG094800
rosa_wichuraiana	Rw7G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	958
Acc36I	ACCTGC	1 cut(s)	958
AccBSI	CCGCTC	1 cut(s)	195
AccII	CGCG	1 cut(s)	159
AciI	CCGC	5 cut(s)	74, 193, 303, 981, 1004
AclWI	GGATC	2 cut(s)	227, 240
AcoI	YGGCCR	1 cut(s)	66
AdeI	CACNNNGTG	1 cut(s)	572
AfaI	GTAC	1 cut(s)	987
AfiI	CCNNNNNNNGG	2 cut(s)	400, 730
AflIII	ACRYGT	1 cut(s)	278
AjnI	CCWGG	2 cut(s)	316, 531
AleI	CACNNNNGTG	2 cut(s)	281, 633
AluBI	AGCT	4 cut(s)	94, 107, 202, 253
AluI	AGCT	4 cut(s)	94, 107, 202, 253
Alw21I	GWGCWC	1 cut(s)	61
Alw26I	GTCTC	4 cut(s)	124, 665, 778, 1025
AlwI	GGATC	2 cut(s)	227, 240
AoxI	GGCC	5 cut(s)	66, 225, 273, 648, 813
ApeKI	GCWGC	3 cut(s)	94, 107, 464
AspLEI	GCGC	2 cut(s)	159, 161
AspS9I	GGNCC	3 cut(s)	273, 359, 649
AsuC2I	CCSGG	1 cut(s)	461
AsuHPI	GGTGA	3 cut(s)	97, 982, 1054
AvaII	GGWCC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	68
BamHI	GGATCC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	61
BbvCI	CCTCAGC	1 cut(s)	130
BbvI	GCAGC	3 cut(s)	81, 94, 476
BccI	CCATC	5 cut(s)	188, 287, 491, 633, 851
BciT130I	CCWGG	2 cut(s)	318, 533
BcnI	CCSGG	1 cut(s)	461
BcoDI	GTCTC	4 cut(s)	124, 665, 778, 1025
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	958
BglII	AGATCT	1 cut(s)	482
BisI	GCNGC	5 cut(s)	95, 108, 303, 465, 982
BlsI	GCNGC	5 cut(s)	96, 109, 304, 466, 983
Bme1390I	CCNGG	3 cut(s)	318, 461, 533
Bme18I	GGWCC	1 cut(s)	359
BmgT120I	GGNCC	3 cut(s)	273, 359, 649
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	3 cut(s)	318, 461, 533
BmsI	GCATC	3 cut(s)	176, 289, 729
BpmI	CTGGAG	2 cut(s)	106, 202
Bpu10I	CCTNAGC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	383
BpuMI	CCSGG	1 cut(s)	461
BsaJI	CCNNGG	4 cut(s)	69, 228, 317, 611
Bsc4I	CCNNNNNNNGG	2 cut(s)	400, 730
Bse1I	ACTGG	2 cut(s)	518, 562
BseBI	CCWGG	2 cut(s)	318, 533
BseDI	CCNNGG	4 cut(s)	69, 228, 317, 611
BseGI	GGATG	7 cut(s)	13, 180, 298, 354, 502, 506, 832
BseLI	CCNNNNNNNGG	2 cut(s)	400, 730
BseMII	CTCAG	4 cut(s)	117, 144, 335, 341
BseNI	ACTGG	2 cut(s)	518, 562
BsePI	GCGCGC	1 cut(s)	157
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	81, 94, 476
BseYI	CCCAGC	1 cut(s)	198
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	5 cut(s)	68, 227, 275, 650, 815
BsiHKAI	GWGCWC	1 cut(s)	61
BsiSI	CCGG	2 cut(s)	36, 461
BslI	CCNNNNNNNGG	2 cut(s)	400, 730
BsmAI	GTCTC	4 cut(s)	124, 665, 778, 1025
BsmBI	CGTCTC	2 cut(s)	124, 1025
BsnI	GGCC	5 cut(s)	68, 227, 275, 650, 815
Bsp1286I	GDGCHC	1 cut(s)	61
Bsp143I	GATC	2 cut(s)	232, 482
Bsp19I	CCATGG	1 cut(s)	611
BspACI	CCGC	5 cut(s)	74, 193, 303, 981, 1004
BspANI	GGCC	5 cut(s)	68, 227, 275, 650, 815
BspCNI	CTCAG	4 cut(s)	116, 143, 336, 340
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	1 cut(s)	234
BspMAI	CTGCAG	1 cut(s)	99
BspMI	ACCTGC	1 cut(s)	958
BspPI	GGATC	2 cut(s)	227, 240
BsrBI	CCGCTC	1 cut(s)	195
BsrI	ACTGG	2 cut(s)	518, 562
BssECI	CCNNGG	4 cut(s)	69, 228, 317, 611
BssHII	GCGCGC	1 cut(s)	157
BssMI	GATC	2 cut(s)	232, 482
BssT1I	CCWWGG	3 cut(s)	69, 228, 611
Bst2UI	CCWGG	2 cut(s)	318, 533
Bst4CI	ACNGT	4 cut(s)	422, 927, 990, 1027
Bst6I	CTCTTC	1 cut(s)	8
BstC8I	GCNNGC	5 cut(s)	155, 159, 510, 850, 1085
BstDEI	CTNAG	5 cut(s)	103, 130, 327, 344, 479
BstDSI	CCRYGG	1 cut(s)	611
BstF5I	GGATG	7 cut(s)	13, 180, 298, 354, 502, 506, 832
BstFNI	CGCG	1 cut(s)	159
BstHHI	GCGC	2 cut(s)	159, 161
BstKTI	GATC	2 cut(s)	235, 485
BstMAI	GTCTC	4 cut(s)	124, 665, 778, 1025
BstMBI	GATC	2 cut(s)	232, 482
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 533
BstNI	CCWGG	2 cut(s)	318, 533
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	3 cut(s)	316, 459, 531
BstSFI	CTRYAG	1 cut(s)	95
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	3 cut(s)	81, 94, 476
BstX2I	RGATCY	2 cut(s)	232, 482
BstXI	CCANNNNNNTGG	2 cut(s)	76, 823
BstYI	RGATCY	2 cut(s)	232, 482
BsuRI	GGCC	5 cut(s)	68, 227, 275, 650, 815
BtgI	CCRYGG	1 cut(s)	611
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	7 cut(s)	13, 180, 298, 354, 502, 506, 832
BtsI	GCAGTG	2 cut(s)	46, 566
BtsIMutI	CAGTG	3 cut(s)	46, 555, 566
BveI	ACCTGC	1 cut(s)	958
Cac8I	GCNNGC	5 cut(s)	155, 159, 510, 850, 1085
CfoI	GCGC	2 cut(s)	159, 161
Cfr13I	GGNCC	3 cut(s)	273, 359, 649
CseI	GACGC	1 cut(s)	1042
Csp6I	GTAC	1 cut(s)	986
CviAII	CATG	4 cut(s)	279, 537, 612, 666
CviQI	GTAC	1 cut(s)	986
DdeI	CTNAG	5 cut(s)	103, 130, 327, 344, 479
DpnI	GATC	2 cut(s)	234, 484
DpnII	GATC	2 cut(s)	232, 482
DraIII	CACNNNGTG	1 cut(s)	572
EaeI	YGGCCR	1 cut(s)	66
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	3 cut(s)	69, 228, 611
Eco147I	AGGCCT	1 cut(s)	227
Eco32I	GATATC	2 cut(s)	391, 773
Eco47I	GGWCC	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	316, 531
EcoRV	GATATC	2 cut(s)	391, 773
EcoT14I	CCWWGG	3 cut(s)	69, 228, 611
ErhI	CCWWGG	3 cut(s)	69, 228, 611
Esp3I	CGTCTC	2 cut(s)	124, 1025
FaeI	CATG	4 cut(s)	282, 540, 615, 669
FatI	CATG	4 cut(s)	278, 536, 611, 665
FauNDI	CATATG	1 cut(s)	913
Fnu4HI	GCNGC	5 cut(s)	95, 108, 303, 465, 982
FokI	GGATG	7 cut(s)	20, 167, 305, 361, 509, 513, 839
Fsp4HI	GCNGC	5 cut(s)	95, 108, 303, 465, 982
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	2 cut(s)	158, 160
GluI	GCNGC	5 cut(s)	95, 108, 303, 465, 982
GsaI	CCCAGC	1 cut(s)	202
GsuI	CTGGAG	2 cut(s)	106, 202
HaeIII	GGCC	5 cut(s)	68, 227, 275, 650, 815
HapII	CCGG	2 cut(s)	36, 461
HgaI	GACGC	1 cut(s)	1042
HhaI	GCGC	2 cut(s)	159, 161
Hin1II	CATG	4 cut(s)	282, 540, 615, 669
Hin6I	GCGC	2 cut(s)	157, 159
HinP1I	GCGC	2 cut(s)	157, 159
HinfI	GANTC	7 cut(s)	101, 173, 206, 396, 747, 786, 871
HpaII	CCGG	2 cut(s)	36, 461
HphI	GGTGA	3 cut(s)	97, 982, 1054
Hpy188I	TCNGA	5 cut(s)	185, 345, 395, 920, 961
Hpy188III	TCNNGA	2 cut(s)	123, 170
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	4 cut(s)	82, 124, 452, 461
HpyCH4III	ACNGT	4 cut(s)	422, 927, 990, 1027
HpyCH4IV	ACGT	1 cut(s)	369
HpyCH4V	TGCA	5 cut(s)	97, 268, 715, 742, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 533
HpyF3I	CTNAG	5 cut(s)	103, 130, 327, 344, 479
HpySE526I	ACGT	1 cut(s)	369
Hsp92II	CATG	4 cut(s)	282, 540, 615, 669
HspAI	GCGC	2 cut(s)	157, 159
Kzo9I	GATC	2 cut(s)	232, 482
LmnI	GCTCC	2 cut(s)	91, 200
Lsp1109I	GCAGC	3 cut(s)	81, 94, 476
LweI	GCATC	3 cut(s)	176, 289, 729
MaeI	CTAG	1 cut(s)	381
MaeII	ACGT	1 cut(s)	369
MaeIII	GTNAC	2 cut(s)	41, 422
MalI	GATC	2 cut(s)	234, 484
MbiI	CCGCTC	1 cut(s)	195
MboI	GATC	2 cut(s)	232, 482
MboII	GAAGA	7 cut(s)	18, 21, 24, 25, 269, 272, 305
MfeI	CAATTG	1 cut(s)	863
MflI	RGATCY	2 cut(s)	232, 482
MhlI	GDGCHC	1 cut(s)	61
MlsI	TGGCCA	1 cut(s)	68
MluCI	AATT	5 cut(s)	688, 716, 798, 863, 993
MluNI	TGGCCA	1 cut(s)	68
MlyI	GAGTC	4 cut(s)	95, 390, 756, 780
MmeI	TCCRAC	2 cut(s)	418, 898
Mox20I	TGGCCA	1 cut(s)	68
MscI	TGGCCA	1 cut(s)	68
MseI	TTAA	5 cut(s)	405, 675, 992, 998, 1056
MslI	CAYNNNNRTG	2 cut(s)	281, 633
Msp20I	TGGCCA	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	36, 461
MspR9I	CCNGG	3 cut(s)	318, 461, 533
MunI	CAATTG	1 cut(s)	863
MvaI	CCWGG	2 cut(s)	318, 533
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	2 cut(s)	65, 533
NciI	CCSGG	1 cut(s)	461
NcoI	CCATGG	1 cut(s)	611
NdeI	CATATG	1 cut(s)	913
NdeII	GATC	2 cut(s)	232, 482
NlaIII	CATG	4 cut(s)	282, 540, 615, 669
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	282
OliI	CACNNNNGTG	2 cut(s)	281, 633
PaqCI	CACCTGC	1 cut(s)	958
PauI	GCGCGC	1 cut(s)	157
PceI	AGGCCT	1 cut(s)	227
PciI	ACATGT	1 cut(s)	278
PfeI	GAWTC	3 cut(s)	173, 206, 871
PkrI	GCNGC	5 cut(s)	96, 109, 304, 466, 983
PleI	GAGTC	4 cut(s)	95, 390, 755, 780
PpsI	GAGTC	4 cut(s)	95, 390, 755, 780
PscI	ACATGT	1 cut(s)	278
Psp6I	CCWGG	2 cut(s)	316, 531
PspFI	CCCAGC	1 cut(s)	198
PspGI	CCWGG	2 cut(s)	316, 531
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	3 cut(s)	273, 359, 649
PstI	CTGCAG	1 cut(s)	99
PsuI	RGATCY	2 cut(s)	232, 482
PteI	GCGCGC	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	1 cut(s)	987
RsaNI	GTAC	1 cut(s)	986
RseI	CAYNNNNRTG	2 cut(s)	281, 633
SaqAI	TTAA	5 cut(s)	405, 675, 992, 998, 1056
SatI	GCNGC	5 cut(s)	95, 108, 303, 465, 982
Sau3AI	GATC	2 cut(s)	232, 482
Sau96I	GGNCC	3 cut(s)	273, 359, 649
SchI	GAGTC	4 cut(s)	95, 390, 756, 780
ScrFI	CCNGG	3 cut(s)	318, 461, 533
SduI	GDGCHC	1 cut(s)	61
SfaNI	GCATC	3 cut(s)	176, 289, 729
SfcI	CTRYAG	1 cut(s)	95
SinI	GGWCC	1 cut(s)	359
SmiMI	CAYNNNNRTG	2 cut(s)	281, 633
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	688, 716, 798, 863, 993
SseBI	AGGCCT	1 cut(s)	227
SsiI	CCGC	5 cut(s)	74, 193, 303, 981, 1004
SspMI	CTAG	1 cut(s)	381
StuI	AGGCCT	1 cut(s)	227
StyD4I	CCNGG	3 cut(s)	316, 459, 531
StyI	CCWWGG	3 cut(s)	69, 228, 611
TaaI	ACNGT	4 cut(s)	422, 927, 990, 1027
TaiI	ACGT	1 cut(s)	372
TaqI	TCGA	2 cut(s)	171, 796
TaqII	GACCGA	1 cut(s)	347
TasI	AATT	5 cut(s)	688, 716, 798, 863, 993
TauI	GCSGC	2 cut(s)	305, 984
TfiI	GAWTC	3 cut(s)	173, 206, 871
Tru1I	TTAA	5 cut(s)	405, 675, 992, 998, 1056
Tru9I	TTAA	5 cut(s)	405, 675, 992, 998, 1056
TscAI	CASTG	3 cut(s)	46, 562, 573
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	3 cut(s)	94, 107, 464
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	1 cut(s)	1082
TspRI	CASTG	3 cut(s)	46, 562, 573
VpaK11BI	GGWCC	1 cut(s)	359
XceI	RCATGY	1 cut(s)	282
XcmI	CCANNNNNNNNNTGG	2 cut(s)	226, 283
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.