Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006071

Physical Location & Seq

Genomic Coordinates Forward (+)

14958200 .. 14962217

Gene Structure 4018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g11890.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGGGGATGCCAAGAGGAACACTTCTTCTTCTTCTTCCGGCAGTGACGAGGAGATACGAGCACAAGTGGCCAAGGCGGTGGAGGAGGTGAAGGAGCTGCAGGACAAAGCTGCTTCCTTTGTATCCAGAGCCGCCACCGACGAGCAATCCCTCCGCCAGCGCGCCCAATCTCTCGATTCCTCCATCCGCCGCCTCCGCTCCCAGCTTTATTCACTGCTTTCCAGCAAGGCCTTGGATCACAAGTTAGCAGAAAAGCTGGAAGAAGATTTGCAGAGGGCCACATGTGTGTTGGTGGATGGCGAGGCCGCTTCGTTTCTTCCTGGGAAATCTCAGGGAGGAGGGTTTCTAAGGATGTTTCTCGGTCCTATCAATGTGCGTTCCTCTAGCAAAGATATCCAACTCAAGGTTAAAGAGGAATACAACGCTTACAGAGATAGAACTGCCCTGCTATTCCTTATTTTTCCAGCAACACTACTTATACTAAGATCTTGGATTTGGGATGGATGTTTGCCAGCGTTTCCAGTTCAGGCTTACCAGGCATGGCTGTTATTCCTCTACACTGGTTTGGCCCTGCGAGAAAACATACTGAGAGTAAATGGAAGTGATATTCGTCCATGGTGGATATACCATCACTATTGTGCTGTATTTATGGCCCTTGTTAGTCTCACATGGGAGATTAAAGGACAACCAAATTGTTCCCAAAAGCAGAGAGGTGTGCAACTTTTCCTACAATGGGCTATGATGCAAGGAGTTGCTATGCTTTTACAAAATAGATATCAACGCCAGAGACTCTATACTCGAATTGCATTGGGAAAGGCCAAAAGAATGGATGTGGTCTGGGGAGAAACAGCAGGCGTAGATGGTCAATTGTGGATTCTATGTCCAATACTATTTGTTTTACAGGGTTTTGAGGCATATGTCGGAATACAGTTGCTCACAACTGCTTTTATTGGCGTTGTTTCGGAATGGCAGGTGAGTTTTTGCGGCGTGCTGTTAGTTTTAATGGCAGTTGGGAACTTTGTAAATACGGTACAGACGCTTATGGTGAAGTCGAGGTTTAAGGCAAAGATGAAAAGAAGTAAGAGCAAGCAGGATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TMPIT

Protein Analysis

367

Amino Acids

41.39

Weight (kDa)

9.56

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006071)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G33230 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430 AT4G10430
fragaria_vesca	FvH4_5g10150 FvH4_5g10150
malus_domestica	MD06G1127700.v1.1 MD14G1143500.v1.1
prunus_persica	Prupe.5G137500_v2.0.a1
pyrus_communis	pycom06g11780 pycom14g11890
rosa_chinensis	RchiOBHm_Chr7g0188151
rosa_laevigata	RLG00000004724
rosa_multiflora	Rmu_ssc0000422.1_g000025
rosa_roxburghii	Rroxscaffold_3G00266730
rosa_rugosa	Rorug06G0488500
rosa_samantha	Rh7AG092800 Rh7BG094400 Rh7CG094100 Rh7DG094800
rosa_wichuraiana	Rw7G008010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	961
Acc36I	ACCTGC	1 cut(s)	961
AccBSI	CCGCTC	1 cut(s)	198
AccII	CGCG	1 cut(s)	162
AciI	CCGC	8 cut(s)	77, 132, 154, 187, 190, 196, 306, 984
AclWI	GGATC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	69
AfaI	GTAC	1 cut(s)	1032
AfiI	CCNNNNNNNGG	2 cut(s)	403, 733
AflIII	ACRYGT	1 cut(s)	281
AjnI	CCWGG	2 cut(s)	319, 534
AleI	CACNNNNGTG	2 cut(s)	284, 636
AluBI	AGCT	4 cut(s)	97, 110, 205, 256
AluI	AGCT	4 cut(s)	97, 110, 205, 256
Alw21I	GWGCWC	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	668, 781
AlwI	GGATC	1 cut(s)	243
AlwNI	CAGNNNCTG	1 cut(s)	1096
AoxI	GGCC	7 cut(s)	69, 228, 276, 303, 567, 651, 816
ApeKI	GCWGC	2 cut(s)	97, 110
AspLEI	GCGC	2 cut(s)	162, 164
AspS9I	GGNCC	4 cut(s)	276, 362, 568, 652
AsuHPI	GGTGA	3 cut(s)	100, 985, 1057
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	84, 97
BccI	CCATC	5 cut(s)	191, 290, 494, 636, 854
BciT130I	CCWGG	2 cut(s)	321, 536
BciVI	GTATCC	1 cut(s)	133
BcoDI	GTCTC	2 cut(s)	668, 781
BfaI	CTAG	1 cut(s)	384
BfmI	CTRYAG	2 cut(s)	98, 1097
BfuAI	ACCTGC	1 cut(s)	961
BfuI	GTATCC	1 cut(s)	133
BglII	AGATCT	1 cut(s)	485
BisI	GCNGC	6 cut(s)	98, 111, 132, 190, 306, 985
BlsI	GCNGC	6 cut(s)	99, 112, 133, 191, 307, 986
Bme1390I	CCNGG	2 cut(s)	321, 536
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	4 cut(s)	276, 362, 568, 652
BmrFI	CCNGG	2 cut(s)	321, 536
BmsI	GCATC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	386
BsaJI	CCNNGG	4 cut(s)	72, 231, 320, 614
Bsc4I	CCNNNNNNNGG	2 cut(s)	403, 733
Bse1I	ACTGG	2 cut(s)	521, 565
BseBI	CCWGG	2 cut(s)	321, 536
BseDI	CCNNGG	4 cut(s)	72, 231, 320, 614
BseGI	GGATG	7 cut(s)	13, 183, 301, 357, 505, 509, 835
BseLI	CCNNNNNNNGG	2 cut(s)	403, 733
BseMII	CTCAG	2 cut(s)	344, 578
BseNI	ACTGG	2 cut(s)	521, 565
BsePI	GCGCGC	1 cut(s)	160
BseRI	GAGGAG	3 cut(s)	65, 98, 351
BseXI	GCAGC	2 cut(s)	84, 97
BseYI	CCCAGC	1 cut(s)	201
Bsh1236I	CGCG	1 cut(s)	162
BshFI	GGCC	7 cut(s)	71, 230, 278, 305, 569, 653, 818
BsiHKAI	GWGCWC	1 cut(s)	64
BsiSI	CCGG	1 cut(s)	39
BslI	CCNNNNNNNGG	2 cut(s)	403, 733
BsmAI	GTCTC	2 cut(s)	668, 781
BsnI	GGCC	7 cut(s)	71, 230, 278, 305, 569, 653, 818
Bsp1286I	GDGCHC	1 cut(s)	64
Bsp143I	GATC	3 cut(s)	235, 485, 1093
Bsp19I	CCATGG	1 cut(s)	614
BspACI	CCGC	8 cut(s)	77, 132, 154, 187, 190, 196, 306, 984
BspANI	GGCC	7 cut(s)	71, 230, 278, 305, 569, 653, 818
BspCNI	CTCAG	2 cut(s)	343, 579
BspFNI	CGCG	1 cut(s)	162
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	1 cut(s)	243
BsrBI	CCGCTC	1 cut(s)	198
BsrI	ACTGG	2 cut(s)	521, 565
BssECI	CCNNGG	4 cut(s)	72, 231, 320, 614
BssHII	GCGCGC	1 cut(s)	160
BssMI	GATC	3 cut(s)	235, 485, 1093
BssT1I	CCWWGG	3 cut(s)	72, 231, 614
Bst2UI	CCWGG	2 cut(s)	321, 536
Bst4CI	ACNGT	2 cut(s)	930, 1030
BstC8I	GCNNGC	6 cut(s)	158, 162, 513, 853, 989, 1088
BstDEI	CTNAG	4 cut(s)	330, 347, 482, 587
BstDSI	CCRYGG	1 cut(s)	614
BstF5I	GGATG	7 cut(s)	13, 183, 301, 357, 505, 509, 835
BstFNI	CGCG	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	162, 164
BstKTI	GATC	3 cut(s)	238, 488, 1096
BstMAI	GTCTC	2 cut(s)	668, 781
BstMBI	GATC	3 cut(s)	235, 485, 1093
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 195, 536
BstNI	CCWGG	2 cut(s)	321, 536
BstNSI	RCATGY	1 cut(s)	285
BstSCI	CCNGG	2 cut(s)	319, 534
BstSFI	CTRYAG	2 cut(s)	98, 1097
BstUI	CGCG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	84, 97
BstX2I	RGATCY	2 cut(s)	485, 1093
BstXI	CCANNNNNNTGG	2 cut(s)	79, 826
BstYI	RGATCY	2 cut(s)	485, 1093
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	7 cut(s)	71, 230, 278, 305, 569, 653, 818
BtgI	CCRYGG	1 cut(s)	614
BtsCI	GGATG	7 cut(s)	13, 183, 301, 357, 505, 509, 835
BtsI	GCAGTG	2 cut(s)	49, 212
BtsIMutI	CAGTG	3 cut(s)	49, 212, 558
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	6 cut(s)	158, 162, 513, 853, 989, 1088
CaiI	CAGNNNCTG	1 cut(s)	1096
CfoI	GCGC	2 cut(s)	162, 164
Cfr13I	GGNCC	4 cut(s)	276, 362, 568, 652
CseI	GACGC	1 cut(s)	1045
Csp6I	GTAC	1 cut(s)	1031
CviAII	CATG	4 cut(s)	282, 540, 615, 669
CviQI	GTAC	1 cut(s)	1031
DdeI	CTNAG	4 cut(s)	330, 347, 482, 587
DpnI	GATC	3 cut(s)	237, 487, 1095
DpnII	GATC	3 cut(s)	235, 485, 1093
EaeI	YGGCCR	1 cut(s)	69
EciI	GGCGGA	2 cut(s)	143, 176
Eco130I	CCWWGG	3 cut(s)	72, 231, 614
Eco147I	AGGCCT	1 cut(s)	230
Eco32I	GATATC	2 cut(s)	394, 776
Eco47I	GGWCC	1 cut(s)	362
EcoRII	CCWGG	2 cut(s)	319, 534
EcoRV	GATATC	2 cut(s)	394, 776
EcoT14I	CCWWGG	3 cut(s)	72, 231, 614
ErhI	CCWWGG	3 cut(s)	72, 231, 614
FaeI	CATG	4 cut(s)	285, 543, 618, 672
FatI	CATG	4 cut(s)	281, 539, 614, 668
FauNDI	CATATG	1 cut(s)	916
Fnu4HI	GCNGC	6 cut(s)	98, 111, 132, 190, 306, 985
FokI	GGATG	7 cut(s)	20, 170, 308, 364, 512, 516, 842
Fsp4HI	GCNGC	6 cut(s)	98, 111, 132, 190, 306, 985
FspBI	CTAG	1 cut(s)	384
GlaI	GCGC	2 cut(s)	161, 163
GluI	GCNGC	6 cut(s)	98, 111, 132, 190, 306, 985
GsaI	CCCAGC	1 cut(s)	205
HaeIII	GGCC	7 cut(s)	71, 230, 278, 305, 569, 653, 818
HapII	CCGG	1 cut(s)	39
HgaI	GACGC	1 cut(s)	1045
HhaI	GCGC	2 cut(s)	162, 164
Hin1II	CATG	4 cut(s)	285, 543, 618, 672
Hin6I	GCGC	2 cut(s)	160, 162
HinP1I	GCGC	2 cut(s)	160, 162
HinfI	GANTC	3 cut(s)	176, 789, 874
HpaII	CCGG	1 cut(s)	39
HphI	GGTGA	3 cut(s)	100, 985, 1057
Hpy188I	TCNGA	2 cut(s)	923, 964
Hpy188III	TCNNGA	2 cut(s)	126, 173
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	930, 1030
HpyCH4V	TGCA	5 cut(s)	100, 271, 718, 745, 806
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 195, 536
HpyF3I	CTNAG	4 cut(s)	330, 347, 482, 587
Hsp92II	CATG	4 cut(s)	285, 543, 618, 672
HspAI	GCGC	2 cut(s)	160, 162
Kzo9I	GATC	3 cut(s)	235, 485, 1093
LmnI	GCTCC	2 cut(s)	94, 203
Lsp1109I	GCAGC	2 cut(s)	84, 97
LweI	GCATC	1 cut(s)	732
MaeI	CTAG	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	3 cut(s)	237, 487, 1095
MbiI	CCGCTC	1 cut(s)	198
MboI	GATC	3 cut(s)	235, 485, 1093
MboII	GAAGA	7 cut(s)	18, 21, 24, 27, 272, 275, 308
MfeI	CAATTG	1 cut(s)	866
MflI	RGATCY	2 cut(s)	485, 1093
MhlI	GDGCHC	1 cut(s)	64
MlsI	TGGCCA	1 cut(s)	71
MluCI	AATT	3 cut(s)	691, 801, 866
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	783
MmeI	TCCRAC	2 cut(s)	421, 901
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	4 cut(s)	408, 678, 1001, 1059
MslI	CAYNNNNRTG	2 cut(s)	284, 636
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	1 cut(s)	39
MspR9I	CCNGG	2 cut(s)	321, 536
MunI	CAATTG	1 cut(s)	866
MvaI	CCWGG	2 cut(s)	321, 536
MvnI	CGCG	1 cut(s)	162
MwoI	GCNNNNNNNGC	3 cut(s)	68, 195, 536
NcoI	CCATGG	1 cut(s)	614
NdeI	CATATG	1 cut(s)	916
NdeII	GATC	3 cut(s)	235, 485, 1093
NlaIII	CATG	4 cut(s)	285, 543, 618, 672
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	285
OliI	CACNNNNGTG	2 cut(s)	284, 636
PaqCI	CACCTGC	1 cut(s)	961
PauI	GCGCGC	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	230
PciI	ACATGT	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	176, 874
PkrI	GCNGC	6 cut(s)	99, 112, 133, 191, 307, 986
PleI	GAGTC	1 cut(s)	783
PpsI	GAGTC	1 cut(s)	783
PscI	ACATGT	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	319, 534
PspFI	CCCAGC	1 cut(s)	201
PspGI	CCWGG	2 cut(s)	319, 534
PspPI	GGNCC	4 cut(s)	276, 362, 568, 652
PstI	CTGCAG	1 cut(s)	102
PstNI	CAGNNNCTG	1 cut(s)	1096
PsuI	RGATCY	2 cut(s)	485, 1093
PteI	GCGCGC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	1032
RsaNI	GTAC	1 cut(s)	1031
RseI	CAYNNNNRTG	2 cut(s)	284, 636
SaqAI	TTAA	4 cut(s)	408, 678, 1001, 1059
SatI	GCNGC	6 cut(s)	98, 111, 132, 190, 306, 985
Sau3AI	GATC	3 cut(s)	235, 485, 1093
Sau96I	GGNCC	4 cut(s)	276, 362, 568, 652
SchI	GAGTC	1 cut(s)	783
ScrFI	CCNGG	2 cut(s)	321, 536
SduI	GDGCHC	1 cut(s)	64
SetI	ASST	9 cut(s)	90, 99, 112, 207, 258, 408, 715, 975, 1058
SfaNI	GCATC	1 cut(s)	732
SfcI	CTRYAG	2 cut(s)	98, 1097
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	2 cut(s)	284, 636
SmlI	CTYRAG	1 cut(s)	401
SmoI	CTYRAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	691, 801, 866
SseBI	AGGCCT	1 cut(s)	230
SsiI	CCGC	8 cut(s)	77, 132, 154, 187, 190, 196, 306, 984
SspMI	CTAG	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	319, 534
StyI	CCWWGG	3 cut(s)	72, 231, 614
TaaI	ACNGT	2 cut(s)	930, 1030
TaqI	TCGA	3 cut(s)	174, 799, 1052
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	3 cut(s)	691, 801, 866
TauI	GCSGC	4 cut(s)	134, 192, 308, 987
TfiI	GAWTC	2 cut(s)	176, 874
Tru1I	TTAA	4 cut(s)	408, 678, 1001, 1059
Tru9I	TTAA	4 cut(s)	408, 678, 1001, 1059
TscAI	CASTG	3 cut(s)	49, 219, 565
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	2 cut(s)	97, 110
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	1 cut(s)	1085
TspRI	CASTG	3 cut(s)	49, 219, 565
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	285
XcmI	CCANNNNNNNNNTGG	2 cut(s)	229, 286
XspI	CTAG	1 cut(s)	384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.