Rw7G008010

Transmembrane protein 120

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0006071
Physical Location & Seq
Forward (+)
7303557 .. 7308513
4957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G008010.1

Sequence Viewer

Length: 1095 bp
ATGGGAGACGATGCGCAGAAGAAGAACTCTGGTTCTCTGGACGCCCTACAAGCTGAAGTCACCAAGGCCATGGAGGGCGCCAAGTCGTTACAGGACTCGGCTTCCTCCTTCATCTCCAGAAACTCCAGCGAGGAACAGTCGCTTCGCCTGCGAGCCCAGGCTCTCGATTCCACAATCCGCCGCCTCCGTTCCCAAATCTATTCTCTTCACCATCATGACAACAAGGCCGTCGATCCCAAGCTCTGCGAAAAGCTGGAAGAAGATTTGCACAGGGCCACGTGTGTTTTGACGGACGGCGACGCCGGTTCTTTTCTTCCTCCCAGAGCCCACGGGGGGTTTCTGAGGATGTTTCTTGGTCCTATCAACGTGCGTTCGTCTAGCAAAGACATCCAACTCAAGGTTAAAGAAGAATACAATGCTTACAGAGATCGAACTGCCCTGCTATTCCTTCTCTTTCCATTTGCACTACTTATTCTGAGGTCTTGGATATGGGATGGATGCTTGCCAACATTTCCTGTTCAAGCTTACCAGGCATGGCTCTTATTCCTCTACACTGGTTTGTCATTGCGAGAAAACATACTGAGAGTAAACGGAAGTGATATTCGTCCATGGTGGATATACCATCACTATTGTGCTATGTTTATGGCCATGGTTAGTCTCACATGGGACATTCAAGGACAACCAAATTGTGCCCAAAAGCAGAGAGGGGTGGAACTTTTCCTGCAATGGGCAATGATGCAAGGAGTGGCTATGCTTTTACAAAATAGATATCAACGCCAGAGACTGTATACTCGAATTGCATTGGGAAAGGCCAATAGGATGGACGTCGTATGGGGTGAAACAGCTGGTGTTGATGGTCAATTGTGGCTTCTATGTCCCATACTTTTTATAATGCAGGGTTTTGAGGCGTATGTTGGACTACAGTTGCTTAAGACTGCTCTGTTCGGGGATGTTACCGAATGGCAGGTGAGTTTGTGCGGTGTGCTATTGATTCTTATGGCGATCGGGAACTTTGTAAATACTGTACAAACACTCATGGTGAAATCGAGGTTCAAGGCAAAGATGAAAAAGACCAAGAGCAAGCAGGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0016020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TMPIT

Protein Analysis

364

Amino Acids

41.51

Weight (kDa)

9.25

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TMEM120A-B PF07851 18 - 351 4.8e-98 TMEM120A/B
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 890
AarI CACCTGC 1 cut(s) 955
AatII GACGTC 1 cut(s) 828
Acc16I TGCGCA 1 cut(s) 15
Acc36I ACCTGC 1 cut(s) 955
AccB1I GGYRCC 1 cut(s) 77
AccI GTMKAC 1 cut(s) 788
AciI CCGC 3 cut(s) 178, 181, 978
AclWI GGATC 1 cut(s) 227
AcoI YGGCCR 1 cut(s) 645
AcuI CTGAAG 1 cut(s) 75
AcvI CACGTG 1 cut(s) 279
AcyI GRCGYC 4 cut(s) 42, 78, 300, 825
AfaI GTAC 1 cut(s) 1026
AfiI CCNNNNNNNGG 3 cut(s) 333, 397, 727
AflII CTTAAG 1 cut(s) 929
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 3 cut(s) 521, 674, 1054
AjnI CCWGG 2 cut(s) 156, 528
AleI CACNNNNGTG 1 cut(s) 630
AluBI AGCT 5 cut(s) 53, 241, 253, 524, 845
AluI AGCT 5 cut(s) 53, 241, 253, 524, 845
Alw26I GTCTC 2 cut(s) 662, 775
AlwI GGATC 1 cut(s) 227
AlwNI CAGNNNCTG 1 cut(s) 784
AoxI GGCC 5 cut(s) 66, 225, 273, 645, 810
AspLEI GCGC 2 cut(s) 16, 80
AspS9I GGNCC 2 cut(s) 273, 356
AsuHPI GGTGA 5 cut(s) 52, 200, 848, 979, 1051
AvaII GGWCC 1 cut(s) 356
BaeGI GKGCMC 1 cut(s) 694
BalI TGGCCA 1 cut(s) 647
BanI GGYRCC 1 cut(s) 77
BanII GRGCYC 2 cut(s) 157, 328
BbrPI CACGTG 1 cut(s) 279
BccI CCATC 5 cut(s) 219, 488, 630, 814, 848
BceAI ACGGC 2 cut(s) 212, 310
BciT130I CCWGG 2 cut(s) 158, 530
BcoDI GTCTC 2 cut(s) 662, 775
BfaI CTAG 1 cut(s) 378
BfmI CTRYAG 1 cut(s) 920
BfoI RGCGCY 1 cut(s) 81
BfrI CTTAAG 1 cut(s) 929
BfuAI ACCTGC 1 cut(s) 955
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 2 cut(s) 158, 530
Bme18I GGWCC 1 cut(s) 356
BmgT120I GGNCC 2 cut(s) 273, 356
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 2 cut(s) 158, 530
BmsI GCATC 2 cut(s) 488, 726
BpmI CTGGAG 2 cut(s) 100, 109
BpuEI CTTGAG 1 cut(s) 380
BsaAI YACGTR 1 cut(s) 279
BsaHI GRCGYC 4 cut(s) 42, 78, 300, 825
BsaJI CCNNGG 6 cut(s) 63, 69, 156, 328, 608, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 333, 397, 727
Bse118I RCCGGY 1 cut(s) 302
Bse1I ACTGG 1 cut(s) 559
Bse3DI GCAATG 3 cut(s) 563, 731, 738
BseBI CCWGG 2 cut(s) 158, 530
BseDI CCNNGG 6 cut(s) 63, 69, 156, 328, 608, 648
BseGI GGATG 6 cut(s) 351, 387, 499, 503, 825, 955
BseLI CCNNNNNNNGG 3 cut(s) 333, 397, 727
BseMI GCAATG 3 cut(s) 563, 731, 738
BseMII CTCAG 3 cut(s) 332, 467, 572
BseNI ACTGG 1 cut(s) 559
BseSI GKGCMC 1 cut(s) 694
Bsh1285I CGRYCG 1 cut(s) 1005
BshFI GGCC 5 cut(s) 68, 227, 275, 647, 812
BshNI GGYRCC 1 cut(s) 77
BsiEI CGRYCG 1 cut(s) 1005
BsiSI CCGG 1 cut(s) 303
BslFI GGGAC 2 cut(s) 680, 861
BslI CCNNNNNNNGG 3 cut(s) 333, 397, 727
BsmAI GTCTC 2 cut(s) 662, 775
BsmFI GGGAC 2 cut(s) 680, 861
BsnI GGCC 5 cut(s) 68, 227, 275, 647, 812
Bsp1286I GDGCHC 3 cut(s) 157, 328, 694
Bsp1407I TGTACA 1 cut(s) 1024
Bsp143I GATC 3 cut(s) 232, 427, 1002
Bsp19I CCATGG 3 cut(s) 69, 608, 648
BspACI CCGC 3 cut(s) 178, 181, 978
BspANI GGCC 5 cut(s) 68, 227, 275, 647, 812
BspCNI CTCAG 3 cut(s) 333, 468, 573
BspHI TCATGA 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 1 cut(s) 227
BspT107I GGYRCC 1 cut(s) 77
BspTI CTTAAG 1 cut(s) 929
BsrDI GCAATG 3 cut(s) 563, 731, 738
BsrFI RCCGGY 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 1024
BsrI ACTGG 1 cut(s) 559
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 6 cut(s) 63, 69, 156, 328, 608, 648
BssMI GATC 3 cut(s) 232, 427, 1002
BssNAI GTATAC 1 cut(s) 789
BssNI GRCGYC 4 cut(s) 42, 78, 300, 825
BssT1I CCWWGG 4 cut(s) 63, 69, 608, 648
Bst1107I GTATAC 1 cut(s) 789
Bst2UI CCWGG 2 cut(s) 158, 530
Bst4CI ACNGT 4 cut(s) 138, 786, 924, 1024
Bst6I CTCTTC 1 cut(s) 210
BstACI GRCGYC 4 cut(s) 42, 78, 300, 825
BstAFI CTTAAG 1 cut(s) 929
BstAUI TGTACA 1 cut(s) 1024
BstBAI YACGTR 1 cut(s) 279
BstC8I GCNNGC 4 cut(s) 149, 153, 503, 1082
BstDEI CTNAG 3 cut(s) 341, 476, 581
BstDSI CCRYGG 4 cut(s) 69, 328, 608, 648
BstF5I GGATG 6 cut(s) 351, 387, 499, 503, 825, 955
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 2 cut(s) 16, 80
BstKTI GATC 3 cut(s) 235, 430, 1005
BstMAI GTCTC 2 cut(s) 662, 775
BstMBI GATC 3 cut(s) 232, 427, 1002
BstMCI CGRYCG 1 cut(s) 1005
BstMWI GCNNNNNNNGC 3 cut(s) 50, 148, 530
BstNI CCWGG 2 cut(s) 158, 530
BstSCI CCNGG 2 cut(s) 156, 528
BstSFI CTRYAG 1 cut(s) 920
BstSLI GKGCMC 1 cut(s) 694
BstXI CCANNNNNNTGG 2 cut(s) 70, 820
BstZ17I GTATAC 1 cut(s) 789
BsuRI GGCC 5 cut(s) 68, 227, 275, 647, 812
BtgI CCRYGG 4 cut(s) 69, 328, 608, 648
BtsCI GGATG 6 cut(s) 351, 387, 499, 503, 825, 955
BtsIMutI CAGTG 1 cut(s) 552
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 4 cut(s) 149, 153, 503, 1082
CaiI CAGNNNCTG 1 cut(s) 784
CciI TCATGA 1 cut(s) 214
CfoI GCGC 2 cut(s) 16, 80
Cfr10I RCCGGY 1 cut(s) 302
Cfr13I GGNCC 2 cut(s) 273, 356
CseI GACGC 2 cut(s) 50, 308
Csp6I GTAC 1 cut(s) 1025
CviAII CATG 7 cut(s) 70, 215, 534, 609, 649, 663, 1036
CviQI GTAC 1 cut(s) 1025
DdeI CTNAG 3 cut(s) 341, 476, 581
DinI GGCGCC 1 cut(s) 79
DpnI GATC 3 cut(s) 234, 429, 1004
DpnII GATC 3 cut(s) 232, 427, 1002
EaeI YGGCCR 1 cut(s) 645
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 4 cut(s) 63, 69, 608, 648
Eco24I GRGCYC 2 cut(s) 157, 328
Eco32I GATATC 1 cut(s) 770
Eco47I GGWCC 1 cut(s) 356
Eco57I CTGAAG 1 cut(s) 75
Eco72I CACGTG 1 cut(s) 279
EcoRII CCWGG 2 cut(s) 156, 528
EcoRV GATATC 1 cut(s) 770
EcoT14I CCWWGG 4 cut(s) 63, 69, 608, 648
EcoT38I GRGCYC 2 cut(s) 157, 328
EgeI GGCGCC 1 cut(s) 79
EheI GGCGCC 1 cut(s) 79
ErhI CCWWGG 4 cut(s) 63, 69, 608, 648
FaeI CATG 7 cut(s) 73, 218, 537, 612, 652, 666, 1039
FaqI GGGAC 2 cut(s) 680, 861
FatI CATG 7 cut(s) 69, 214, 533, 608, 648, 662, 1035
FblI GTMKAC 1 cut(s) 788
Fnu4HI GCNGC 1 cut(s) 181
FokI GGATG 6 cut(s) 358, 374, 506, 510, 832, 962
FriOI GRGCYC 2 cut(s) 157, 328
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 378
FspI TGCGCA 1 cut(s) 15
GlaI GCGC 2 cut(s) 15, 79
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 2 cut(s) 100, 109
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 5 cut(s) 68, 227, 275, 647, 812
HapII CCGG 1 cut(s) 303
HgaI GACGC 2 cut(s) 50, 308
HhaI GCGC 2 cut(s) 16, 80
Hin1I GRCGYC 4 cut(s) 42, 78, 300, 825
Hin1II CATG 7 cut(s) 73, 218, 537, 612, 652, 666, 1039
Hin6I GCGC 2 cut(s) 14, 78
HinP1I GCGC 2 cut(s) 14, 78
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 3 cut(s) 95, 167, 991
HpaII CCGG 1 cut(s) 303
HphI GGTGA 5 cut(s) 52, 200, 848, 979, 1051
Hpy166II GTNNAC 2 cut(s) 589, 789
Hpy188I TCNGA 2 cut(s) 342, 477
Hpy188III TCNNGA 5 cut(s) 38, 117, 164, 215, 1006
Hpy8I GTNNAC 2 cut(s) 589, 789
Hpy99I CGWCG 3 cut(s) 233, 302, 830
HpyAV CCTTC 2 cut(s) 118, 458
HpyCH4III ACNGT 4 cut(s) 138, 786, 924, 1024
HpyCH4IV ACGT 3 cut(s) 278, 366, 825
HpyCH4V TGCA 6 cut(s) 268, 464, 724, 739, 800, 895
HpyF10VI GCNNNNNNNGC 3 cut(s) 50, 148, 530
HpyF3I CTNAG 3 cut(s) 341, 476, 581
HpySE526I ACGT 3 cut(s) 278, 366, 825
Hsp92I GRCGYC 4 cut(s) 42, 78, 300, 825
Hsp92II CATG 7 cut(s) 73, 218, 537, 612, 652, 666, 1039
HspAI GCGC 2 cut(s) 14, 78
KasI GGCGCC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 232, 427, 1002
LweI GCATC 2 cut(s) 488, 726
MaeI CTAG 1 cut(s) 378
MaeII ACGT 3 cut(s) 278, 366, 825
MaeIII GTNAC 3 cut(s) 58, 87, 952
MalI GATC 3 cut(s) 234, 429, 1004
MboI GATC 3 cut(s) 232, 427, 1002
MboII GAAGA 7 cut(s) 31, 34, 197, 269, 272, 305, 419
MfeI CAATTG 1 cut(s) 860
MhlI GDGCHC 3 cut(s) 157, 328, 694
MlsI TGGCCA 1 cut(s) 647
MluCI AATT 4 cut(s) 685, 795, 860, 1088
MluNI TGGCCA 1 cut(s) 647
Mly113I GGCGCC 1 cut(s) 78
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 415, 895
Mox20I TGGCCA 1 cut(s) 647
MscI TGGCCA 1 cut(s) 647
MseI TTAA 2 cut(s) 402, 930
MslI CAYNNNNRTG 2 cut(s) 213, 630
Msp20I TGGCCA 1 cut(s) 647
MspA1I CMGCKG 1 cut(s) 845
MspCI CTTAAG 1 cut(s) 929
MspI CCGG 1 cut(s) 303
MspR9I CCNGG 2 cut(s) 158, 530
MunI CAATTG 1 cut(s) 860
MvaI CCWGG 2 cut(s) 158, 530
MwoI GCNNNNNNNGC 3 cut(s) 50, 148, 530
NarI GGCGCC 1 cut(s) 78
NcoI CCATGG 3 cut(s) 69, 608, 648
NdeII GATC 3 cut(s) 232, 427, 1002
NlaIII CATG 7 cut(s) 73, 218, 537, 612, 652, 666, 1039
NlaIV GGNNCC 1 cut(s) 79
NmeAIII GCCGAG 1 cut(s) 77
NmuCI GTSAC 1 cut(s) 58
NsbI TGCGCA 1 cut(s) 15
OliI CACNNNNGTG 1 cut(s) 630
PagI TCATGA 1 cut(s) 214
PaqCI CACCTGC 1 cut(s) 955
PfeI GAWTC 2 cut(s) 167, 991
PkrI GCNGC 1 cut(s) 182
Ple19I CGATCG 1 cut(s) 1005
PleI GAGTC 1 cut(s) 89
PluTI GGCGCC 1 cut(s) 81
PmaCI CACGTG 1 cut(s) 279
PmlI CACGTG 1 cut(s) 279
PpsI GAGTC 1 cut(s) 89
Ppu21I YACGTR 1 cut(s) 279
PsiI TTATAA 1 cut(s) 890
Psp6I CCWGG 2 cut(s) 156, 528
PspCI CACGTG 1 cut(s) 279
PspGI CCWGG 2 cut(s) 156, 528
PspN4I GGNNCC 1 cut(s) 79
PspPI GGNCC 2 cut(s) 273, 356
PstNI CAGNNNCTG 1 cut(s) 784
PvuI CGATCG 1 cut(s) 1005
PvuII CAGCTG 1 cut(s) 845
RsaI GTAC 1 cut(s) 1026
RsaNI GTAC 1 cut(s) 1025
RseI CAYNNNNRTG 2 cut(s) 213, 630
SaqAI TTAA 2 cut(s) 402, 930
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 3 cut(s) 232, 427, 1002
Sau96I GGNCC 2 cut(s) 273, 356
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 2 cut(s) 158, 530
SduI GDGCHC 3 cut(s) 157, 328, 694
SfaNI GCATC 2 cut(s) 488, 726
SfcI CTRYAG 1 cut(s) 920
SfoI GGCGCC 1 cut(s) 79
SinI GGWCC 1 cut(s) 356
SmiMI CAYNNNNRTG 2 cut(s) 213, 630
SmlI CTYRAG 2 cut(s) 395, 929
SmoI CTYRAG 2 cut(s) 395, 929
Sse9I AATT 4 cut(s) 685, 795, 860, 1088
SsiI CCGC 3 cut(s) 178, 181, 978
SspDI GGCGCC 1 cut(s) 77
SspMI CTAG 1 cut(s) 378
StyD4I CCNGG 2 cut(s) 156, 528
StyI CCWWGG 4 cut(s) 63, 69, 608, 648
TaaI ACNGT 4 cut(s) 138, 786, 924, 1024
TaiI ACGT 3 cut(s) 281, 369, 828
TaqI TCGA 5 cut(s) 165, 231, 430, 793, 1046
TasI AATT 4 cut(s) 685, 795, 860, 1088
TatI WGTACW 1 cut(s) 1024
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 2 cut(s) 167, 991
Tru1I TTAA 2 cut(s) 402, 930
Tru9I TTAA 2 cut(s) 402, 930
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 2 cut(s) 100, 1079
TspGWI ACGGA 3 cut(s) 176, 305, 606
TspRI CASTG 1 cut(s) 559
Vha464I CTTAAG 1 cut(s) 929
VpaK11BI GGWCC 1 cut(s) 356
XmiI GTMKAC 1 cut(s) 788
XspI CTAG 1 cut(s) 378
ZraI GACGTC 1 cut(s) 826
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.