Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

7142922 .. 7147391

Gene Structure 4470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G11880.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGTGAGGGGAAAGACAGAGATGAAGAGGATAGAGAACGCAACGAGCAGGCAAGTGACTTTCTCAAAAAGAAGAAATGGACTTTTGAAGAAAGCTTTTGAATTATCAGTCCTTTGTGATGCTGAAGTTGCCCTAATCATCTTCTCTCCTAGAGGCAAACTCTATGAGTTCTCTAGCTCCTCCAGTATACCTAAAACAGTAGAAAGATATCAAAAGCGAATACAAGATCTCGGGTCTAACCATAAGAGAAATGATAATTCACAGCAATCGAAGGACGAAACCTATGGCTTGGCGAGAAAGATCGAACATTTGGAGATTTCGACACGAAAAATGATGGGAGAAGGACTTGACGCATCTTCTATAGAAGAGTTACAACAATTGGAGAACCAGTTGGACAGAAGCTTAATGAAAATAAGAGCCAAAAAGTACCAGTTATTACGAGAAGAAACTGAGAAATTAAAAGAAAAGGAGAGGAACCTCATTGCAGAAAATAAAATGCTGATGGAGAAGTGTGAGATGCAAGGAAGAGGAATAATAGGAAGAATATCATCATCATCATCAACATCAGAACTGGATATAGATGACAATGAAATGGAAGTGGTGACTGATTTGTTCATTGGACCTCCTGAGACTCGACACTTCAAAAAGTTTCCTCCTTCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

221

Amino Acids

25.49

Weight (kDa)

9.1

Isoelectric Point (pI)

54.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.3e-27	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	84 - 157	1.1e-19	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	187
AcuI	CTGAAG	1 cut(s)	144
AfaI	GTAC	1 cut(s)	428
AgsI	TTSAA	4 cut(s)	88, 101, 643, 660
AluBI	AGCT	3 cut(s)	95, 177, 402
AluI	AGCT	3 cut(s)	95, 177, 402
Alw26I	GTCTC	1 cut(s)	623
Ama87I	CYCGRG	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	620
AsuHPI	GGTGA	2 cut(s)	16, 613
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	620
BccI	CCATC	2 cut(s)	328, 496
BcoDI	GTCTC	1 cut(s)	623
BfaI	CTAG	2 cut(s)	150, 174
BfmI	CTRYAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	226
Bme18I	GGWCC	1 cut(s)	620
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	620
BmiI	GGNNCC	1 cut(s)	476
BmsI	GCATC	3 cut(s)	109, 362, 507
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	166
BsaXI	ACNNNNNCTCC	2 cut(s)	374, 404
Bse1I	ACTGG	4 cut(s)	183, 388, 430, 576
Bse3DI	GCAATG	1 cut(s)	480
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	2 cut(s)	441, 618
BseNI	ACTGG	4 cut(s)	183, 388, 430, 576
BseRI	GAGGAG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	230
BsmAI	GTCTC	1 cut(s)	623
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	2 cut(s)	226, 300
BspCNI	CTCAG	2 cut(s)	442, 619
BspLI	GGNNCC	1 cut(s)	476
BsrDI	GCAATG	1 cut(s)	480
BsrI	ACTGG	4 cut(s)	183, 388, 430, 576
BssMI	GATC	2 cut(s)	226, 300
BssNAI	GTATAC	1 cut(s)	188
Bst1107I	GTATAC	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	3 cut(s)	20, 360, 520
BstC8I	GCNNGC	1 cut(s)	50
BstDEI	CTNAG	2 cut(s)	450, 627
BstKTI	GATC	2 cut(s)	229, 303
BstMAI	GTCTC	1 cut(s)	623
BstMBI	GATC	2 cut(s)	226, 300
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSFI	CTRYAG	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BstZ17I	GTATAC	1 cut(s)	188
Cac8I	GCNNGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	620
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	427
CviJI	RGCY	5 cut(s)	95, 177, 288, 402, 419
CviKI_1	RGCY	5 cut(s)	95, 177, 288, 402, 419
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	450, 627
DpnI	GATC	2 cut(s)	228, 302
DpnII	GATC	2 cut(s)	226, 300
Eam1104I	CTCTTC	3 cut(s)	20, 360, 520
EarI	CTCTTC	3 cut(s)	20, 360, 520
Eco32I	GATATC	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	620
Eco57I	CTGAAG	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	230
EcoRV	GATATC	1 cut(s)	209
FaiI	YATR	6 cut(s)	165, 188, 243, 285, 362, 578
FblI	GTMKAC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	150, 174
GsuI	CTGGAG	1 cut(s)	166
HgaI	GACGC	1 cut(s)	359
HindIII	AAGCTT	2 cut(s)	93, 400
HinfI	GANTC	1 cut(s)	631
HphI	GGTGA	2 cut(s)	16, 613
Hpy166II	GTNNAC	1 cut(s)	188
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	1 cut(s)	188
HpyAV	CCTTC	3 cut(s)	265, 335, 666
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	485, 520
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	450, 627
Kzo9I	GATC	2 cut(s)	226, 300
LmnI	GCTCC	1 cut(s)	182
LpnPI	CCDG	6 cut(s)	34, 196, 401, 443, 557, 639
LweI	GCATC	3 cut(s)	109, 362, 507
MaeI	CTAG	2 cut(s)	150, 174
MaeIII	GTNAC	3 cut(s)	55, 369, 601
MalI	GATC	2 cut(s)	228, 302
MboI	GATC	2 cut(s)	226, 300
MboII	GAAGA	9 cut(s)	37, 84, 100, 133, 348, 377, 455, 537, 552
MfeI	CAATTG	1 cut(s)	377
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	4 cut(s)	101, 256, 377, 455
MlyI	GAGTC	1 cut(s)	625
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	8 cut(s)	21, 146, 190, 465, 488, 521, 633, 663
MseI	TTAA	2 cut(s)	404, 458
MunI	CAATTG	1 cut(s)	377
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	226, 300
NlaIV	GGNNCC	1 cut(s)	476
NmuCI	GTSAC	2 cut(s)	55, 601
PleI	GAGTC	1 cut(s)	625
PpsI	GAGTC	1 cut(s)	625
PspN4I	GGNNCC	1 cut(s)	476
PspPI	GGNCC	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SaqAI	TTAA	2 cut(s)	404, 458
Sau3AI	GATC	2 cut(s)	226, 300
Sau96I	GGNCC	1 cut(s)	620
SchI	GAGTC	1 cut(s)	625
SetI	ASST	7 cut(s)	97, 179, 193, 284, 404, 480, 625
SfaNI	GCATC	3 cut(s)	109, 362, 507
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	620
Sse9I	AATT	4 cut(s)	101, 256, 377, 455
SspMI	CTAG	2 cut(s)	150, 174
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	4 cut(s)	269, 303, 320, 634
TasI	AATT	4 cut(s)	101, 256, 377, 455
Tru1I	TTAA	2 cut(s)	404, 458
Tru9I	TTAA	2 cut(s)	404, 458
TseFI	GTSAC	2 cut(s)	55, 601
Tsp45I	GTSAC	2 cut(s)	55, 601
TspDTI	ATGAA	4 cut(s)	38, 422, 603, 604
VpaK11BI	GGWCC	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	187
XspI	CTAG	2 cut(s)	150, 174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.