Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Reverse (-)

52445078 .. 52452246

Gene Structure 7169 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003769

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGTTAGGGGGAAGACTCAGATGAAGCGGATAGAGAATGCTGCGAGCCGGCAAGTGACCTTCTCGAAGCGAAGGAATGGACTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGATGCTGAAGTTGCACTCATCATTTTCTCCACCAGAGGGAAGCTCTATGAGTTTTCGAGTTGTTCCAGTTTGAACAACACAATAGACCGTTTTCAAAAGAGAGTGAAGGATCAAGGCCTCAGCGGTAAAGCAGTTCAAGATCACGATCATATGGAGCTTGCTAATGAAGACACCAGTAGCATGGCAAAGAGGATTGAGTTTATTGAATCTTCTAAAAGGAAGCTCTTAGGTGATGGTTTAGAATCATGTTCAATAGACGAGCTACAACAGATAGAAAACCAATTGGAGCGAAGCTTAGCCAAAATTAGAGATAGAAAGAACCTGATGCTGAGGGAGCAGATAGAGCTGATGAAGGAAGAGGTAAGACTTCTGTGTATATTCATTTTCACCTCATATTTGTGTGTTACTATTCTAATAAATGCTACTACATACAATATTGATTCCATTTGTTTTTTTGGCATGATCAATAATCATGATGATCAGGAGAAAAGCCTACTCAAGCAAAATGTTGAGCTAAGGGAAAAGTGTGGCATGCAACCAATTGGTCCCCCAAACAATAGAGAAGGAGGAGAAGAAGAAGAAGATGAAGAGGATGATGTAGAAACCGAGAGCGAGACTGAAACTATGGAAGTGGAGACGGAATTGTTCATCGGGCCACCCAAAAGACAAAGAAGTTCCAAGAAAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

270

Amino Acids

30.91

Weight (kDa)

5.24

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 162	2.3e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 240
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	801
AcuI	CTGAAG	2 cut(s)	107, 144
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	190, 212, 254, 323, 369
AluBI	AGCT	8 cut(s)	103, 160, 274, 340, 379, 411, 463, 631
AluI	AGCT	8 cut(s)	103, 160, 274, 340, 379, 411, 463, 631
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	725, 746
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	3 cut(s)	93, 232, 770
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	801
AspS9I	GGNCC	2 cut(s)	662, 770
AsuHPI	GGTGA	2 cut(s)	359, 496
AvaII	GGWCC	1 cut(s)	662
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	20, 291
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	2 cut(s)	236, 446
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	344
BclI	TGATCA	2 cut(s)	579, 595
BcoDI	GTCTC	2 cut(s)	725, 746
BfaI	CTAG	1 cut(s)	808
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	662
BmgT120I	GGNCC	2 cut(s)	662, 770
BmiI	GGNNCC	1 cut(s)	664
BmsI	GCATC	2 cut(s)	109, 432
BpiI	GAAGAC	2 cut(s)	20, 291
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bpu10I	CCTNAGC	3 cut(s)	236, 446, 632
Bpu1102I	GCTNAGC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	599
BsaBI	GATNNNNATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	2 cut(s)	183, 291
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	1 cut(s)	715
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	32, 250, 437
BseNI	ACTGG	2 cut(s)	183, 291
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	3 cut(s)	95, 234, 772
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	648
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	725, 746
BsmBI	CGTCTC	1 cut(s)	746
BsmFI	GGGAC	1 cut(s)	648
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	95, 234, 772
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	5 cut(s)	226, 256, 262, 579, 595
Bsp1720I	GCTNAGC	1 cut(s)	412
BspACI	CCGC	2 cut(s)	28, 240
BspANI	GGCC	3 cut(s)	95, 234, 772
BspCNI	CTCAG	3 cut(s)	31, 249, 438
BspHI	TCATGA	1 cut(s)	589
BspLI	GGNNCC	1 cut(s)	664
BspPI	GGATC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	183, 291
BssAI	RCCGGY	1 cut(s)	48
BssMI	GATC	5 cut(s)	226, 256, 262, 579, 595
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	468, 699
BstC8I	GCNNGC	4 cut(s)	46, 50, 276, 650
BstDEI	CTNAG	6 cut(s)	18, 236, 343, 412, 446, 632
BstF5I	GGATG	1 cut(s)	715
BstKTI	GATC	5 cut(s)	229, 259, 265, 582, 598
BstMAI	GTCTC	2 cut(s)	725, 746
BstMBI	GATC	5 cut(s)	226, 256, 262, 579, 595
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
BstNSI	RCATGY	1 cut(s)	652
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	20, 291
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	95, 234, 772
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	715
Cac8I	GCNNGC	4 cut(s)	46, 50, 276, 650
CciI	TCATGA	1 cut(s)	589
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	662, 770
CviAII	CATG	5 cut(s)	298, 363, 577, 590, 649
DdeI	CTNAG	6 cut(s)	18, 236, 343, 412, 446, 632
DpnI	GATC	5 cut(s)	228, 258, 264, 581, 597
DpnII	GATC	5 cut(s)	226, 256, 262, 579, 595
Eam1104I	CTCTTC	2 cut(s)	468, 699
EarI	CTCTTC	2 cut(s)	468, 699
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	2 cut(s)	95, 234
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	662
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	107, 144
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	746
FaeI	CATG	5 cut(s)	301, 366, 580, 593, 652
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	648
FatI	CATG	5 cut(s)	297, 362, 576, 589, 648
FauNDI	CATATG	1 cut(s)	267
FbaI	TGATCA	2 cut(s)	579, 595
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	808
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	3 cut(s)	95, 234, 772
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	5 cut(s)	301, 366, 580, 593, 652
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	4 cut(s)	16, 323, 359, 557
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	2 cut(s)	359, 496
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	5 cut(s)	64, 254, 260, 590, 599
HpyAV	CCTTC	6 cut(s)	66, 70, 85, 217, 463, 674
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	2 cut(s)	131, 652
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
HpyF3I	CTNAG	6 cut(s)	18, 236, 343, 412, 446, 632
Hsp92II	CATG	5 cut(s)	301, 366, 580, 593, 652
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Ksp22I	TGATCA	2 cut(s)	579, 595
Kzo9I	GATC	5 cut(s)	226, 256, 262, 579, 595
LmnI	GCTCC	3 cut(s)	271, 403, 451
LpnPI	CCDG	6 cut(s)	62, 163, 196, 304, 452, 584
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	109, 432
MaeI	CTAG	1 cut(s)	808
MaeIII	GTNAC	2 cut(s)	55, 520
MalI	GATC	5 cut(s)	228, 258, 264, 581, 597
MboI	GATC	5 cut(s)	226, 256, 262, 579, 595
MfeI	CAATTG	2 cut(s)	398, 657
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	5 cut(s)	398, 420, 657, 758, 801
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	8 cut(s)	146, 245, 300, 441, 469, 517, 677, 700
MroNI	GCCGGC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	514
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	1 cut(s)	49
MunI	CAATTG	2 cut(s)	398, 657
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
NaeI	GCCGGC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	5 cut(s)	226, 256, 262, 579, 595
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	5 cut(s)	301, 366, 580, 593, 652
NlaIV	GGNNCC	1 cut(s)	664
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	652
PaeI	GCATGC	1 cut(s)	652
PagI	TCATGA	1 cut(s)	589
PceI	AGGCCT	2 cut(s)	95, 234
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	3 cut(s)	323, 359, 557
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	664
PspPI	GGNCC	2 cut(s)	662, 770
RseI	CAYNNNNRTG	1 cut(s)	514
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	5 cut(s)	226, 256, 262, 579, 595
Sau96I	GGNCC	2 cut(s)	662, 770
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 432
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	1 cut(s)	514
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
SphI	GCATGC	1 cut(s)	652
Sse9I	AATT	5 cut(s)	398, 420, 657, 758, 801
SseBI	AGGCCT	2 cut(s)	95, 234
SsiI	CCGC	2 cut(s)	28, 240
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	1 cut(s)	808
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	2 cut(s)	95, 234
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	2 cut(s)	65, 173
TasI	AATT	5 cut(s)	398, 420, 657, 758, 801
TfiI	GAWTC	3 cut(s)	323, 359, 557
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	6 cut(s)	38, 297, 482, 487, 717, 754
TspGWI	ACGGA	1 cut(s)	770
VpaK11BI	GGWCC	1 cut(s)	662
XapI	RAATTY	1 cut(s)	801
XceI	RCATGY	1 cut(s)	652
XspI	CTAG	1 cut(s)	808

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.