Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

4019944 .. 4021847

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0056400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTGTTCGAACTATGCAAGAATGTGTTTCGGGGTGTCTTCCCCTTCGAGCCCCCGATCGAAACCCAAGGGTAGATCTAAACGACATGATTCATGTGCCGTCAACACTAGTCTTGCTGTTGAAGAGCATTCAACAACAGACCTTCTGAACAGATATAGTAGCTTTAGCAAGGGTGAGTTGAGTGCTACGGAAGCCAGCCTGAACCATATGGTTGAAGAGTCTTCTGAGGACTCAAAATCTGAGGAATCGATTGGCAACAAGATAATGGTGGTTGTGGACTCGAGCCTGGAAGCTAAGGGAGCTCTTGAATGGGCACTATCCCACACTGCACAAACCCATGATACCATTTTGCTTCTTCATCTTGCTAATGCTGCAGACACAAATGAGAAGTTTGATGGTATAAGGGCTTTTGAACTTCTTCACAGTTTGAAAAAACTTTGTCAAATCAGCAAGCCTGGGGTGCTAGTGGAGGTAGCATTGGTTGAAGTTGAAGAAGGGAAGGAAAAGGGTCAGATGATAGTGGAAGAAGCAAAGAGACAAGGGGTGTCTCTACTTGTTCTTGGGCAAGAAAGAAAGAGGTTGACATGGTGGCAGCTAGGTTGTAGTGGGGGCGGAGGTGAGGGCGTTGGCGAGGTTGTGGTGGAGTACTGCATACAAAATGCTGCTTGCATGACGGTTGCAGTGAGGAAAAAGAACAGCAATGGGGGAGGCTACTTGATCAGCACCAAGCTTCACAAGAATTTCTGGCTTCTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

252

Amino Acids

27.43

Weight (kDa)

6.46

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	87 - 229	3.2e-11	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	612
AcsI	RAATTY	1 cut(s)	739
AfaI	GTAC	1 cut(s)	647
AgsI	TTSAA	8 cut(s)	122, 132, 215, 308, 413, 430, 485, 491
AhlI	ACTAGT	1 cut(s)	107
AjnI	CCWGG	2 cut(s)	285, 454
AluBI	AGCT	6 cut(s)	162, 293, 302, 595, 730, 755
AluI	AGCT	6 cut(s)	162, 293, 302, 595, 730, 755
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	2 cut(s)	529, 552
Ama87I	CYCGRG	1 cut(s)	280
ApeKI	GCWGC	3 cut(s)	371, 592, 662
ApoI	RAATTY	1 cut(s)	739
Asp700I	GAANNNNTTC	1 cut(s)	417
AsuHPI	GGTGA	2 cut(s)	185, 629
AsuII	TTCGAA	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	280
BaeGI	GKGCMC	1 cut(s)	316
BanII	GRGCYC	2 cut(s)	53, 304
BbsI	GAAGAC	2 cut(s)	30, 213
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	358, 604, 649
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	83
BciT130I	CCWGG	2 cut(s)	287, 456
BclI	TGATCA	1 cut(s)	717
BcoDI	GTCTC	2 cut(s)	529, 552
BcuI	ACTAGT	1 cut(s)	107
BfaI	CTAG	4 cut(s)	108, 464, 596, 752
BfmI	CTRYAG	1 cut(s)	372
BglII	AGATCT	1 cut(s)	74
BisI	GCNGC	3 cut(s)	372, 593, 663
BlsI	GCNGC	3 cut(s)	373, 594, 664
BmcAI	AGTACT	1 cut(s)	647
Bme1390I	CCNGG	2 cut(s)	287, 456
BmeT110I	CYCGRG	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	287, 456
BpiI	GAAGAC	2 cut(s)	30, 213
Bpu10I	CCTNAGC	1 cut(s)	294
Bpu14I	TTCGAA	1 cut(s)	8
Bsa29I	ATCGAT	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	66, 455
Bse3DI	GCAATG	1 cut(s)	706
BseBI	CCWGG	2 cut(s)	287, 456
BseCI	ATCGAT	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	66, 455
BseMI	GCAATG	1 cut(s)	706
BseMII	CTCAG	2 cut(s)	216, 231
BseSI	GKGCMC	1 cut(s)	316
BseXI	GCAGC	3 cut(s)	358, 604, 649
BsgI	GTGCAG	1 cut(s)	312
Bsh1285I	CGRYCG	1 cut(s)	59
BshVI	ATCGAT	1 cut(s)	248
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	529, 552
BsmI	GAATGC	1 cut(s)	127
BsoBI	CYCGRG	1 cut(s)	280
Bsp119I	TTCGAA	1 cut(s)	8
Bsp1286I	GDGCHC	3 cut(s)	53, 304, 316
Bsp143I	GATC	3 cut(s)	56, 74, 717
BspACI	CCGC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	217, 232
BspDI	ATCGAT	1 cut(s)	248
BspMAI	CTGCAG	1 cut(s)	376
BspQI	GCTCTTC	1 cut(s)	117
BspT104I	TTCGAA	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	706
BssECI	CCNNGG	2 cut(s)	66, 455
BssMI	GATC	3 cut(s)	56, 74, 717
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	287, 456
Bst4CI	ACNGT	2 cut(s)	425, 676
Bst6I	CTCTTC	2 cut(s)	117, 210
BstBI	TTCGAA	1 cut(s)	8
BstC8I	GCNNGC	3 cut(s)	196, 452, 667
BstDEI	CTNAG	3 cut(s)	225, 240, 294
BstKTI	GATC	3 cut(s)	59, 77, 720
BstMAI	GTCTC	2 cut(s)	529, 552
BstMBI	GATC	3 cut(s)	56, 74, 717
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	4 cut(s)	191, 299, 371, 460
BstNI	CCWGG	2 cut(s)	287, 456
BstSCI	CCNGG	2 cut(s)	285, 454
BstSFI	CTRYAG	1 cut(s)	372
BstSLI	GKGCMC	1 cut(s)	316
BstV1I	GCAGC	3 cut(s)	358, 604, 649
BstV2I	GAAGAC	2 cut(s)	30, 213
BstX2I	RGATCY	1 cut(s)	74
BstYI	RGATCY	1 cut(s)	74
Bsu15I	ATCGAT	1 cut(s)	248
BsuTUI	ATCGAT	1 cut(s)	248
BtsI	GCAGTG	2 cut(s)	324, 687
BtsIMutI	CAGTG	2 cut(s)	324, 687
Cac8I	GCNNGC	3 cut(s)	196, 452, 667
ClaI	ATCGAT	1 cut(s)	248
Csp6I	GTAC	1 cut(s)	646
CviAII	CATG	5 cut(s)	86, 93, 338, 585, 670
CviQI	GTAC	1 cut(s)	646
DdeI	CTNAG	3 cut(s)	225, 240, 294
DpnI	GATC	3 cut(s)	58, 76, 719
DpnII	GATC	3 cut(s)	56, 74, 717
Eam1104I	CTCTTC	2 cut(s)	117, 210
EarI	CTCTTC	2 cut(s)	117, 210
EciI	GGCGGA	1 cut(s)	627
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	66
Eco24I	GRGCYC	2 cut(s)	53, 304
Eco53kI	GAGCTC	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	280
EcoICRI	GAGCTC	1 cut(s)	302
EcoRII	CCWGG	2 cut(s)	285, 454
EcoT14I	CCWWGG	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	53, 304
ErhI	CCWWGG	1 cut(s)	66
FaeI	CATG	5 cut(s)	89, 96, 341, 588, 673
FatI	CATG	5 cut(s)	85, 92, 337, 584, 669
FauNDI	CATATG	1 cut(s)	207
FbaI	TGATCA	1 cut(s)	717
Fnu4HI	GCNGC	3 cut(s)	372, 593, 663
FriOI	GRGCYC	2 cut(s)	53, 304
Fsp4HI	GCNGC	3 cut(s)	372, 593, 663
FspBI	CTAG	4 cut(s)	108, 464, 596, 752
GluI	GCNGC	3 cut(s)	372, 593, 663
Hin1II	CATG	5 cut(s)	89, 96, 341, 588, 673
HincII	GTYRAC	2 cut(s)	103, 582
HindII	GTYRAC	2 cut(s)	103, 582
HindIII	AAGCTT	1 cut(s)	728
HinfI	GANTC	5 cut(s)	89, 218, 230, 245, 278
HphI	GGTGA	2 cut(s)	185, 629
Hpy166II	GTNNAC	3 cut(s)	103, 277, 582
Hpy188I	TCNGA	4 cut(s)	147, 226, 241, 513
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	3 cut(s)	103, 277, 582
HpyAV	CCTTC	4 cut(s)	54, 152, 488, 493
HpyCH4III	ACNGT	2 cut(s)	425, 676
HpyCH4V	TGCA	6 cut(s)	17, 329, 374, 651, 669, 680
HpyF10VI	GCNNNNNNNGC	4 cut(s)	191, 299, 371, 460
HpyF3I	CTNAG	3 cut(s)	225, 240, 294
Hsp92II	CATG	5 cut(s)	89, 96, 341, 588, 673
Ksp22I	TGATCA	1 cut(s)	717
Kzo9I	GATC	3 cut(s)	56, 74, 717
LguI	GCTCTTC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	299
LpnPI	CCDG	7 cut(s)	208, 212, 272, 299, 441, 468, 730
Lsp1109I	GCAGC	3 cut(s)	358, 604, 649
MaeI	CTAG	4 cut(s)	108, 464, 596, 752
MalI	GATC	3 cut(s)	58, 76, 719
MboI	GATC	3 cut(s)	56, 74, 717
MboII	GAAGA	8 cut(s)	30, 134, 213, 227, 347, 410, 503, 536
MflI	RGATCY	1 cut(s)	74
MhlI	GDGCHC	3 cut(s)	53, 304, 316
MluCI	AATT	1 cut(s)	739
MlyI	GAGTC	3 cut(s)	224, 227, 272
MnlI	CCTC	9 cut(s)	220, 235, 463, 570, 608, 613, 625, 678, 701
MroXI	GAANNNNTTC	1 cut(s)	417
MspR9I	CCNGG	2 cut(s)	287, 456
Mva1269I	GAATGC	1 cut(s)	127
MvaI	CCWGG	2 cut(s)	287, 456
MwoI	GCNNNNNNNGC	4 cut(s)	191, 299, 371, 460
NdeI	CATATG	1 cut(s)	207
NdeII	GATC	3 cut(s)	56, 74, 717
NlaIII	CATG	5 cut(s)	89, 96, 341, 588, 673
NspV	TTCGAA	1 cut(s)	8
PaeR7I	CTCGAG	1 cut(s)	280
PciSI	GCTCTTC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	2 cut(s)	89, 245
PkrI	GCNGC	3 cut(s)	373, 594, 664
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	3 cut(s)	224, 226, 272
PpsI	GAGTC	3 cut(s)	224, 226, 272
Psp124BI	GAGCTC	1 cut(s)	304
Psp6I	CCWGG	2 cut(s)	285, 454
PspGI	CCWGG	2 cut(s)	285, 454
PspXI	VCTCGAGB	1 cut(s)	280
PstI	CTGCAG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	74
PvuI	CGATCG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	647
RsaNI	GTAC	1 cut(s)	646
SacI	GAGCTC	1 cut(s)	304
SapI	GCTCTTC	1 cut(s)	117
SatI	GCNGC	3 cut(s)	372, 593, 663
Sau3AI	GATC	3 cut(s)	56, 74, 717
ScaI	AGTACT	1 cut(s)	647
SchI	GAGTC	3 cut(s)	224, 227, 272
ScrFI	CCNGG	2 cut(s)	287, 456
SduI	GDGCHC	3 cut(s)	53, 304, 316
SfcI	CTRYAG	1 cut(s)	372
Sfr274I	CTCGAG	1 cut(s)	280
SfuI	TTCGAA	1 cut(s)	8
SlaI	CTCGAG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	280
SmoI	CTYRAG	1 cut(s)	280
SpeI	ACTAGT	1 cut(s)	107
Sse9I	AATT	1 cut(s)	739
SsiI	CCGC	1 cut(s)	612
SspMI	CTAG	4 cut(s)	108, 464, 596, 752
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	2 cut(s)	285, 454
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	2 cut(s)	425, 676
TaqI	TCGA	5 cut(s)	8, 47, 59, 248, 281
TasI	AATT	1 cut(s)	739
TatI	WGTACW	1 cut(s)	645
TfiI	GAWTC	2 cut(s)	89, 245
TscAI	CASTG	2 cut(s)	331, 687
TseI	GCWGC	3 cut(s)	371, 592, 662
TspDTI	ATGAA	2 cut(s)	81, 347
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	331, 687
XapI	RAATTY	1 cut(s)	739
XhoI	CTCGAG	1 cut(s)	280
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	4 cut(s)	108, 464, 596, 752
ZrmI	AGTACT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.