Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

9590674 .. 9605278

Gene Structure 14605 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1070200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTGAGGGGGAAGACTCAGATGAAGCGCATCGAAAATGCAGCGAGCCGGCAAGTGACTTTTTCCAAGAGAAGAAATGGGCTGCTGAAGAAAGCCTTTGAGCTTTCAGTCCTGTGTGATGCTGAAGTTGCACTTGTGATCTTCTCCGCAAGAGGGAAGCTCTATGAGTTTTCGAGCACTAGCATCAGAAGCACAATAGACCGTTACCAAATGAGAGTGAAGGATCAAGGCCAGCTCACTACTAAAGCATTTCAAGAAGATATGGAGCATGAGACGAATGACACTCAAACCTTGGCCAAAAAGATCGAGTCTATTGAAGCTTCTAAAAGGAAGCTGTTAGGTAATGATTTGGAATCATGTTCCATGGAGGAATTACATCAGACAGAGAACCAACTGGAGCGAAGCTTAAAAAAAATTAGGGCCAAAAAGCATCAGTTATTGAGGGAGCAAATAGATAAGCTGAAGGAAGAGGAGAAAAACCTATTGGAACAAAATGCAAAGCTACGGGAAATGTGTGGCATGCAACAACTTGGTCCTTCGAGAAAAAGCAAGCATGGAGATGATCGTGAAGTATTCCAGCCTCAGACACCAAATGTGGACGTGGAGACGGATTTGTTCATCGGGCCACCTAAAAGACAACAAAGTGGCCGAAAGCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

220

Amino Acids

25.31

Weight (kDa)

9.45

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	6.6e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	88 - 171	2.9e-23	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	2 cut(s)	294, 646
AcuI	CTGAAG	3 cut(s)	107, 144, 482
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	254, 317
AjiI	CACGTC	1 cut(s)	601
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AluBI	AGCT	8 cut(s)	103, 160, 235, 320, 334, 405, 460, 502
AluI	AGCT	8 cut(s)	103, 160, 235, 320, 334, 405, 460, 502
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	266, 599
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	5 cut(s)	229, 294, 420, 623, 646
ApeKI	GCWGC	2 cut(s)	41, 82
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	3 cut(s)	420, 533, 623
AsuHPI	GGTGA	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	296
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	53, 69
BcoDI	GTCTC	2 cut(s)	266, 599
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	42, 83
BlsI	GCNGC	2 cut(s)	43, 84
Bme18I	GGWCC	1 cut(s)	533
BmgBI	CACGTC	1 cut(s)	601
BmgT120I	GGNCC	3 cut(s)	420, 533, 623
BmsI	GCATC	4 cut(s)	39, 109, 192, 439
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BpmI	CTGGAG	1 cut(s)	416
BsaJI	CCNNGG	2 cut(s)	291, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	399
BseDI	CCNNGG	2 cut(s)	291, 363
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	32, 596
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	485
BseXI	GCAGC	2 cut(s)	53, 69
BshFI	GGCC	5 cut(s)	231, 296, 422, 625, 648
BsiHKAI	GWGCWC	1 cut(s)	179
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	266, 599
BsmBI	CGTCTC	2 cut(s)	266, 599
BsnI	GGCC	5 cut(s)	231, 296, 422, 625, 648
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	4 cut(s)	138, 223, 303, 562
Bsp19I	CCATGG	1 cut(s)	363
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	5 cut(s)	231, 296, 422, 625, 648
BspCNI	CTCAG	2 cut(s)	31, 595
BspPI	GGATC	1 cut(s)	231
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	399
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	2 cut(s)	291, 363
BssMI	GATC	4 cut(s)	138, 223, 303, 562
BssT1I	CCWWGG	2 cut(s)	291, 363
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	462
BstC8I	GCNNGC	5 cut(s)	46, 50, 233, 521, 551
BstDEI	CTNAG	2 cut(s)	18, 582
BstDSI	CCRYGG	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	4 cut(s)	141, 226, 306, 565
BstMAI	GTCTC	2 cut(s)	266, 599
BstMBI	GATC	4 cut(s)	138, 223, 303, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 189
BstNSI	RCATGY	1 cut(s)	523
BstV1I	GCAGC	2 cut(s)	53, 69
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	5 cut(s)	231, 296, 422, 625, 648
BtgI	CCRYGG	1 cut(s)	363
BtrI	CACGTC	1 cut(s)	601
Cac8I	GCNNGC	5 cut(s)	46, 50, 233, 521, 551
CfoI	GCGC	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	3 cut(s)	420, 533, 623
CviAII	CATG	5 cut(s)	269, 357, 364, 520, 554
DdeI	CTNAG	2 cut(s)	18, 582
DpnI	GATC	4 cut(s)	140, 225, 305, 564
DpnII	GATC	4 cut(s)	138, 223, 303, 562
EaeI	YGGCCR	2 cut(s)	294, 646
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco130I	CCWWGG	2 cut(s)	291, 363
Eco47I	GGWCC	1 cut(s)	533
Eco57I	CTGAAG	3 cut(s)	107, 144, 482
EcoT14I	CCWWGG	2 cut(s)	291, 363
ErhI	CCWWGG	2 cut(s)	291, 363
Esp3I	CGTCTC	2 cut(s)	266, 599
FaeI	CATG	5 cut(s)	272, 360, 367, 523, 557
FaiI	YATR	8 cut(s)	165, 263, 270, 358, 365, 521, 555, 658
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 117, 149
FatI	CATG	5 cut(s)	268, 356, 363, 519, 553
Fnu4HI	GCNGC	2 cut(s)	42, 83
Fsp4HI	GCNGC	2 cut(s)	42, 83
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	42, 83
GsuI	CTGGAG	1 cut(s)	416
HaeIII	GGCC	5 cut(s)	231, 296, 422, 625, 648
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	272, 360, 367, 523, 557
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	2 cut(s)	318, 403
HinfI	GANTC	3 cut(s)	16, 308, 353
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	4 cut(s)	21, 188, 381, 585
Hpy188III	TCNNGA	3 cut(s)	254, 540, 566
Hpy8I	GTNNAC	1 cut(s)	598
HpyAV	CCTTC	3 cut(s)	214, 457, 546
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	1 cut(s)	600
HpyCH4V	TGCA	4 cut(s)	41, 131, 497, 523
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 189
HpyF3I	CTNAG	2 cut(s)	18, 582
HpySE526I	ACGT	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	272, 360, 367, 523, 557
HspAI	GCGC	1 cut(s)	28
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	138, 223, 303, 562
LmnI	GCTCC	3 cut(s)	265, 397, 445
LpnPI	CCDG	5 cut(s)	62, 125, 245, 380, 590
Lsp1109I	GCAGC	2 cut(s)	53, 69
LweI	GCATC	4 cut(s)	39, 109, 192, 439
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	600
MaeIII	GTNAC	2 cut(s)	55, 203
MalI	GATC	4 cut(s)	140, 225, 305, 564
MboI	GATC	4 cut(s)	138, 223, 303, 562
MboII	GAAGA	6 cut(s)	25, 84, 100, 133, 269, 479
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	2 cut(s)	371, 414
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	2 cut(s)	10, 317
MnlI	CCTC	5 cut(s)	146, 361, 435, 463, 591
Mox20I	TGGCCA	1 cut(s)	296
MroNI	GCCGGC	1 cut(s)	48
MscI	TGGCCA	1 cut(s)	296
MseI	TTAA	1 cut(s)	407
MslI	CAYNNNNRTG	1 cut(s)	558
Msp20I	TGGCCA	1 cut(s)	296
MspI	CCGG	1 cut(s)	49
MwoI	GCNNNNNNNGC	2 cut(s)	128, 189
NaeI	GCCGGC	1 cut(s)	50
NcoI	CCATGG	1 cut(s)	363
NdeII	GATC	4 cut(s)	138, 223, 303, 562
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	5 cut(s)	272, 360, 367, 523, 557
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	523
PaeI	GCATGC	1 cut(s)	523
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	353
PkrI	GCNGC	2 cut(s)	43, 84
PleI	GAGTC	2 cut(s)	10, 316
PpsI	GAGTC	2 cut(s)	10, 316
PspPI	GGNCC	3 cut(s)	420, 533, 623
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	1 cut(s)	407
SatI	GCNGC	2 cut(s)	42, 83
Sau3AI	GATC	4 cut(s)	138, 223, 303, 562
Sau96I	GGNCC	3 cut(s)	420, 533, 623
SchI	GAGTC	2 cut(s)	10, 317
SduI	GDGCHC	1 cut(s)	179
SfaNI	GCATC	4 cut(s)	39, 109, 192, 439
SinI	GGWCC	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	558
SphI	GCATGC	1 cut(s)	523
Sse9I	AATT	2 cut(s)	371, 414
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	2 cut(s)	291, 363
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	1 cut(s)	603
TaqI	TCGA	4 cut(s)	33, 173, 306, 539
TasI	AATT	2 cut(s)	371, 414
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	407
Tru9I	TTAA	1 cut(s)	407
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	41, 82
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	38, 607
TspGWI	ACGGA	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	533
XceI	RCATGY	1 cut(s)	523
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.