Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

6397944 .. 6402030

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g06360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTGAGGGGGAAGACTCAGATGAAGCGCATCGAAAATGCAGCGAGCAGGCAAGTGACTTTTTCCAAGAGAAGAAATGGGCTGCTGAAGAAAGCCTTTGAGCTTTCAGTCCTGTGTGATGCTGAAGTTGCACTTGTGATCTTCTCCGCAAGAGGGAAGCTCTATGAGTTTTCGAGCACTAGGTACCGTGAGACGAATGACACTCAAACCTTGGCCAAAAAGATCGAGTCTATTGAAGCTTCTAAAAGGTTTAATTCGCTTCTTAACTTGAAATATGTATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

95

Amino Acids

10.81

Weight (kDa)

10.19

Isoelectric Point (pI)

34.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	1.1e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	283
Acc65I	GGTACC	1 cut(s)	183
AccB1I	GGYRCC	1 cut(s)	183
AciI	CCGC	1 cut(s)	147
AcoI	YGGCCR	1 cut(s)	213
AcuI	CTGAAG	2 cut(s)	107, 144
AfaI	GTAC	1 cut(s)	185
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	2 cut(s)	236, 271
AluBI	AGCT	3 cut(s)	103, 160, 239
AluI	AGCT	3 cut(s)	103, 160, 239
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	1 cut(s)	185
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	2 cut(s)	41, 82
Asp718I	GGTACC	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	16
BalI	TGGCCA	1 cut(s)	215
BanI	GGYRCC	1 cut(s)	183
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	53, 69
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	42, 83
BlsI	GCNGC	2 cut(s)	43, 84
BmiI	GGNNCC	1 cut(s)	185
BmsI	GCATC	2 cut(s)	39, 109
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
BsaJI	CCNNGG	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	210
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	32
BseXI	GCAGC	2 cut(s)	53, 69
BshFI	GGCC	1 cut(s)	215
BshNI	GGYRCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	185
BsmBI	CGTCTC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	179
Bsp143I	GATC	2 cut(s)	138, 222
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	1 cut(s)	215
BspCNI	CTCAG	1 cut(s)	31
BspLI	GGNNCC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	2 cut(s)	138, 222
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	46, 50
BstDEI	CTNAG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	141, 225
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	2 cut(s)	138, 222
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	53, 69
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	46, 50
CfoI	GCGC	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	184
CviJI	RGCY	6 cut(s)	82, 95, 103, 160, 215, 239
CviKI_1	RGCY	6 cut(s)	82, 95, 103, 160, 215, 239
CviQI	GTAC	1 cut(s)	184
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	2 cut(s)	140, 224
DpnII	GATC	2 cut(s)	138, 222
EaeI	YGGCCR	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	210
Eco57I	CTGAAG	2 cut(s)	107, 144
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	185
FaiI	YATR	3 cut(s)	165, 276, 283
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 117, 149
Fnu4HI	GCNGC	2 cut(s)	42, 83
Fsp4HI	GCNGC	2 cut(s)	42, 83
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	2 cut(s)	42, 83
HaeIII	GGCC	1 cut(s)	215
HhaI	GCGC	1 cut(s)	30
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	237
HinfI	GANTC	2 cut(s)	16, 227
HphI	GGTGA	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	21
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4V	TGCA	2 cut(s)	41, 131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	18
HspAI	GCGC	1 cut(s)	28
KpnI	GGTACC	1 cut(s)	187
Kzo9I	GATC	2 cut(s)	138, 222
LpnPI	CCDG	2 cut(s)	34, 125
Lsp1109I	GCAGC	2 cut(s)	53, 69
LweI	GCATC	2 cut(s)	39, 109
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	140, 224
MboI	GATC	2 cut(s)	138, 222
MboII	GAAGA	4 cut(s)	25, 84, 100, 133
MhlI	GDGCHC	1 cut(s)	179
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	1 cut(s)	253
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	2 cut(s)	10, 236
MnlI	CCTC	1 cut(s)	146
Mox20I	TGGCCA	1 cut(s)	215
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	2 cut(s)	252, 264
Msp20I	TGGCCA	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	2 cut(s)	138, 222
NlaIV	GGNNCC	1 cut(s)	185
NmuCI	GTSAC	1 cut(s)	55
PkrI	GCNGC	2 cut(s)	43, 84
PleI	GAGTC	2 cut(s)	10, 235
PpsI	GAGTC	2 cut(s)	10, 235
PsiI	TTATAA	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	185
RsaI	GTAC	1 cut(s)	185
RsaNI	GTAC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	252, 264
SatI	GCNGC	2 cut(s)	42, 83
Sau3AI	GATC	2 cut(s)	138, 222
SchI	GAGTC	2 cut(s)	10, 236
SduI	GDGCHC	1 cut(s)	179
SetI	ASST	6 cut(s)	105, 162, 185, 212, 241, 251
SfaNI	GCATC	2 cut(s)	39, 109
Sse9I	AATT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	1 cut(s)	188
TaqI	TCGA	3 cut(s)	33, 173, 225
TasI	AATT	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	252, 264
Tru9I	TTAA	2 cut(s)	252, 264
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	41, 82
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	38
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.