Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Reverse (-)

50803913 .. 50810339

Gene Structure 6427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00256440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGTTAGGGGGAAGACTCAGATGAAGCGGATAGAGAATGCTGCGAGCCGGCAAGTGACCTTCTCGAAGCGAAGGAATGGACTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGATGCTGAAGTTGCACTCATCATTTTCTCCACCAGAGGGAAGCTCTATGAGTTTTCGAGTTGTTCTAGGTACGTTCAAGAAATTAAACCCTTCAAGTTATTATCAGAAGTTGAAGAAAATCGAAGAACAGTACCAATTGAATTGGGTACCCAGATAGATGATTTCTTGAAGCTCTTAGGTGATGGTTTAGAATCATGTTCGATAGACGAGCTACAACAGATAGAAAACCAATTGGAGCGAAGCTTAGCCAAAATTAGAGATAGAAAGAACCTGATGCTGAGGGAGCAGATAGAGCTGATGAAGGAAGAGTGTGGCATGCAACCAACTGGTCCCCCAAACAATAGAGGAGGAGAAGAAGAAGAAGATGAAGAGGATGATGTAGAAACCGAGAGCGAGACTGAAACTATGGAAGTGGAGACGGAATTGTTCATCGGGCCACCCAAAAGACAAAGAAGTTCCAAGAAAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

196

Amino Acids

22.56

Weight (kDa)

4.97

Isoelectric Point (pI)

66.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	96 - 142	2.9e-13	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	263
AciI	CCGC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	582
AcuI	CTGAAG	2 cut(s)	107, 144
AfaI	GTAC	3 cut(s)	188, 249, 265
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	5 cut(s)	194, 211, 230, 257, 286
AluBI	AGCT	6 cut(s)	103, 160, 289, 328, 360, 412
AluI	AGCT	6 cut(s)	103, 160, 289, 328, 360, 412
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	2 cut(s)	506, 527
AoxI	GGCC	2 cut(s)	93, 551
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	582
Asp718I	GGTACC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	446, 551
AsuHPI	GGTGA	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	446
BanI	GGYRCC	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	395
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	293
BcoDI	GTCTC	2 cut(s)	506, 527
BfaI	CTAG	2 cut(s)	183, 589
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	361
BlsI	GCNGC	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	2 cut(s)	446, 551
BmiI	GGNNCC	2 cut(s)	265, 448
BmsI	GCATC	2 cut(s)	109, 381
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bpu10I	CCTNAGC	1 cut(s)	395
Bpu1102I	GCTNAGC	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	2 cut(s)	32, 386
BseNI	ACTGG	1 cut(s)	448
BseRI	GAGGAG	2 cut(s)	477, 480
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	95, 553
BshNI	GGYRCC	1 cut(s)	263
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	49
BslFI	GGGAC	1 cut(s)	432
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	2 cut(s)	506, 527
BsmBI	CGTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	432
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	95, 553
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1720I	GCTNAGC	1 cut(s)	361
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	95, 553
BspCNI	CTCAG	2 cut(s)	31, 387
BspLI	GGNNCC	2 cut(s)	265, 448
BspT107I	GGYRCC	1 cut(s)	263
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	448
BssAI	RCCGGY	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	2 cut(s)	417, 480
BstC8I	GCNNGC	3 cut(s)	46, 50, 434
BstDEI	CTNAG	4 cut(s)	18, 292, 361, 395
BstF5I	GGATG	1 cut(s)	496
BstMAI	GTCTC	2 cut(s)	506, 527
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 400, 409
BstNSI	RCATGY	1 cut(s)	436
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	2 cut(s)	95, 553
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	496
Cac8I	GCNNGC	3 cut(s)	46, 50, 434
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	446, 551
Csp6I	GTAC	3 cut(s)	187, 248, 264
CviAII	CATG	2 cut(s)	312, 433
CviQI	GTAC	3 cut(s)	187, 248, 264
DdeI	CTNAG	4 cut(s)	18, 292, 361, 395
Eam1104I	CTCTTC	2 cut(s)	417, 480
EarI	CTCTTC	2 cut(s)	417, 480
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	105
Eco47I	GGWCC	1 cut(s)	446
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	107, 144
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
Esp3I	CGTCTC	1 cut(s)	527
FaeI	CATG	2 cut(s)	315, 436
FaiI	YATR	4 cut(s)	165, 313, 434, 524
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FaqI	GGGAC	1 cut(s)	432
FatI	CATG	2 cut(s)	311, 432
Fnu4HI	GCNGC	1 cut(s)	42
FokI	GGATG	1 cut(s)	503
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	2 cut(s)	183, 589
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	95, 553
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	2 cut(s)	315, 436
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	2 cut(s)	16, 308
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	2 cut(s)	21, 223
Hpy188III	TCNNGA	3 cut(s)	64, 194, 283
HpyAV	CCTTC	5 cut(s)	66, 70, 85, 217, 412
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	2 cut(s)	131, 436
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 400, 409
HpyF3I	CTNAG	4 cut(s)	18, 292, 361, 395
HpySE526I	ACGT	1 cut(s)	189
Hsp92II	CATG	2 cut(s)	315, 436
KpnI	GGTACC	1 cut(s)	267
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
LmnI	GCTCC	2 cut(s)	352, 400
LpnPI	CCDG	5 cut(s)	62, 163, 281, 401, 429
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	109, 381
MaeI	CTAG	2 cut(s)	183, 589
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	55
MfeI	CAATTG	2 cut(s)	252, 347
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	7 cut(s)	198, 252, 257, 347, 369, 539, 582
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	146, 390, 455, 458, 481
MroNI	GCCGGC	1 cut(s)	48
MseI	TTAA	1 cut(s)	201
MspI	CCGG	1 cut(s)	49
MunI	CAATTG	2 cut(s)	252, 347
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	128, 400, 409
NaeI	GCCGGC	1 cut(s)	50
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	315, 436
NlaIV	GGNNCC	2 cut(s)	265, 448
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	436
PaeI	GCATGC	1 cut(s)	436
PceI	AGGCCT	1 cut(s)	95
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	105
PspN4I	GGNNCC	2 cut(s)	265, 448
PspPI	GGNCC	2 cut(s)	446, 551
RsaI	GTAC	3 cut(s)	188, 249, 265
RsaNI	GTAC	3 cut(s)	187, 248, 264
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	201
SatI	GCNGC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	446, 551
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 381
SinI	GGWCC	1 cut(s)	446
SphI	GCATGC	1 cut(s)	436
Sse9I	AATT	7 cut(s)	198, 252, 257, 347, 369, 539, 582
SseBI	AGGCCT	1 cut(s)	95
SsiI	CCGC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	183, 589
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	4 cut(s)	65, 173, 238, 317
TasI	AATT	7 cut(s)	198, 252, 257, 347, 369, 539, 582
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	4 cut(s)	38, 431, 498, 535
TspGWI	ACGGA	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	582
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	2 cut(s)	183, 589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.