Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

17162035 .. 17163451

Gene Structure 1417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGGTGAGATTAACCGCACTTCTTCTTACTTTTCAGTCAACCAGCTTGCTTGGTAAGGCCTATCTTGCTAATGAAGACACCAGTAGCATGGCAAAGAGGATTGAGTTTATTGAATCTTCTAAAAGGAAGCTCTTAGGTGATGGTTTAGAATCATGTTCGATAGACGAGCTACAGCAGATAGAAAACCAATTGGAGCGAAGCTTAGCCAAAATTAGAGATAGAAAGAACCTGATGCTGAGGGAGCAGATAGAGCTGATGAAGGAAGAGGAGAAAAGCCTACTCAAGCAAAATGTTGAGCTAAGGGAAAAGTGTGGCATGCAACCAATTGGTCCCCCAAACAATAGAGGAGGAGGAGAAGAAGATGAAGAGGATGATGTAGAAACCGAGAGCGAGACTGAAACTATGGAAGTGGAGACGGAATTATTCATCGGGCCACCCAAAAGACAAAGAAGTTCCAAGAAAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

156

Amino Acids

17.81

Weight (kDa)

4.86

Isoelectric Point (pI)

72.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	24 - 104	2.5e-22	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	15
AcsI	RAATTY	1 cut(s)	462
AgsI	TTSAA	1 cut(s)	113
AluBI	AGCT	6 cut(s)	45, 130, 169, 201, 253, 298
AluI	AGCT	6 cut(s)	45, 130, 169, 201, 253, 298
Alw26I	GTCTC	2 cut(s)	386, 407
AoxI	GGCC	2 cut(s)	57, 431
ApoI	RAATTY	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	329, 431
AsuHPI	GGTGA	2 cut(s)	16, 149
AvaII	GGWCC	1 cut(s)	329
BbsI	GAAGAC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	236
BccI	CCATC	1 cut(s)	134
BcoDI	GTCTC	2 cut(s)	386, 407
BfaI	CTAG	1 cut(s)	469
BfmI	CTRYAG	1 cut(s)	170
BlpI	GCTNAGC	1 cut(s)	202
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	2 cut(s)	329, 431
BmiI	GGNNCC	1 cut(s)	331
BmsI	GCATC	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	81
Bpu10I	CCTNAGC	2 cut(s)	236, 299
Bpu1102I	GCTNAGC	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	266
Bse1I	ACTGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	376
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	4 cut(s)	281, 360, 363, 366
BshFI	GGCC	2 cut(s)	59, 433
BslFI	GGGAC	1 cut(s)	315
BsmAI	GTCTC	2 cut(s)	386, 407
BsmBI	CGTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	315
BsnI	GGCC	2 cut(s)	59, 433
Bsp1720I	GCTNAGC	1 cut(s)	202
BspACI	CCGC	1 cut(s)	15
BspANI	GGCC	2 cut(s)	59, 433
BspCNI	CTCAG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	258, 360
BstC8I	GCNNGC	2 cut(s)	47, 317
BstDEI	CTNAG	4 cut(s)	133, 202, 236, 299
BstF5I	GGATG	1 cut(s)	376
BstMAI	GTCTC	2 cut(s)	386, 407
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 241, 250
BstNSI	RCATGY	1 cut(s)	319
BstSFI	CTRYAG	1 cut(s)	170
BstV2I	GAAGAC	1 cut(s)	81
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	59, 433
BtsCI	GGATG	1 cut(s)	376
Cac8I	GCNNGC	2 cut(s)	47, 317
Cfr13I	GGNCC	2 cut(s)	329, 431
CviAII	CATG	3 cut(s)	88, 153, 316
DdeI	CTNAG	4 cut(s)	133, 202, 236, 299
Eam1104I	CTCTTC	2 cut(s)	258, 360
EarI	CTCTTC	2 cut(s)	258, 360
Eco147I	AGGCCT	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	3 cut(s)	91, 156, 319
FaiI	YATR	4 cut(s)	89, 154, 317, 404
FaqI	GGGAC	1 cut(s)	315
FatI	CATG	3 cut(s)	87, 152, 315
FokI	GGATG	1 cut(s)	383
FspBI	CTAG	1 cut(s)	469
HaeIII	GGCC	2 cut(s)	59, 433
Hin1II	CATG	3 cut(s)	91, 156, 319
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	2 cut(s)	113, 149
HphI	GGTGA	2 cut(s)	16, 149
Hpy166II	GTNNAC	1 cut(s)	39
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	253
HpyCH4V	TGCA	1 cut(s)	319
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 241, 250
HpyF3I	CTNAG	4 cut(s)	133, 202, 236, 299
Hsp92II	CATG	3 cut(s)	91, 156, 319
LmnI	GCTCC	2 cut(s)	193, 241
LpnPI	CCDG	3 cut(s)	55, 94, 242
LweI	GCATC	1 cut(s)	222
MaeI	CTAG	1 cut(s)	469
MboII	GAAGA	7 cut(s)	14, 86, 108, 275, 368, 371, 377
MfeI	CAATTG	2 cut(s)	188, 324
MluCI	AATT	5 cut(s)	188, 210, 324, 419, 462
MnlI	CCTC	7 cut(s)	90, 231, 259, 338, 341, 344, 361
MseI	TTAA	1 cut(s)	11
MunI	CAATTG	2 cut(s)	188, 324
MwoI	GCNNNNNNNGC	3 cut(s)	65, 241, 250
NlaIII	CATG	3 cut(s)	91, 156, 319
NlaIV	GGNNCC	1 cut(s)	331
NspI	RCATGY	1 cut(s)	319
PaeI	GCATGC	1 cut(s)	319
PceI	AGGCCT	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	113, 149
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	2 cut(s)	329, 431
SaqAI	TTAA	1 cut(s)	11
Sau96I	GGNCC	2 cut(s)	329, 431
SetI	ASST	8 cut(s)	47, 132, 139, 171, 203, 231, 255, 300
SfaNI	GCATC	1 cut(s)	222
SfcI	CTRYAG	1 cut(s)	170
SinI	GGWCC	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
SphI	GCATGC	1 cut(s)	319
Sse9I	AATT	5 cut(s)	188, 210, 324, 419, 462
SseBI	AGGCCT	1 cut(s)	59
SsiI	CCGC	1 cut(s)	15
SspMI	CTAG	1 cut(s)	469
StuI	AGGCCT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	158
TasI	AATT	5 cut(s)	188, 210, 324, 419, 462
TfiI	GAWTC	2 cut(s)	113, 149
Tru1I	TTAA	1 cut(s)	11
Tru9I	TTAA	1 cut(s)	11
TspDTI	ATGAA	4 cut(s)	87, 272, 378, 415
TspGWI	ACGGA	1 cut(s)	431
VpaK11BI	GGWCC	1 cut(s)	329
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	319
XspI	CTAG	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.