Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002748.1

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Reverse (-)

82098 .. 87867

Gene Structure 5770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002748.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atgttcgctgttgacgagggcaaagcaccgccatgccgtccccaagagccaccggccacaggggttgtcagtaactttaggcacgtgtcaccaccagacacacgcgtggaacgggacccttgtgtacctccactttccacattgggtgaatcaaagagtgagtgccttaacatgtgggggaagactcagatgaagcggatagagaatgctgcgagccggcaagtgaccttctcgaagcgaaggaatggactgctgaagaaggcctttgagctctcggttctctgcgatgctgaagttgcactcatcattttctccaccagagggaagctctatgagttttcgagttgttctagtttgaacaacacaatagaccgttttcaaaagagagtgaaggatcaaggcctcagcggtaaagcagttcaagatcacgatcatatggagcttgctaatgaagacaccagtagcatggcaaagaggattgagtttattgaatcttctaaaaggaagctcttaggtgatggtttagaatcatgttcgatagaggagctacagcagatagaaaaccaattggagcgaagcttagccaaaattagagatagaaagaacctgatgctgagggagcagatagagctgatgaaggaagaggagaaaagcctactcaagcaaaatgttgagctaagggaaaagtgtggcatgcaaccaattggtcccccaaacaatagaggaggaggaggagaagaagatgaagaggatgatgtagaaaccgagagcgagactgaaactatggaagtggagacggaattattcatcgggccacccaaaagacaaagaagttccaagaaaattccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

283

Amino Acids

31.98

Weight (kDa)

5.46

Isoelectric Point (pI)

64.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	3 cut(s)	29, 196, 408
AclWI	GGATC	1 cut(s)	402
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	843
AcuI	CTGAAG	2 cut(s)	275, 312
AcvI	CACGTG	1 cut(s)	85
AfaI	GTAC	1 cut(s)	126
AfiI	CCNNNNNNNGG	2 cut(s)	59, 321
AflIII	ACRYGT	3 cut(s)	84, 103, 171
AgsI	TTSAA	4 cut(s)	358, 380, 422, 491
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	8 cut(s)	271, 328, 442, 508, 547, 579, 631, 676
AluI	AGCT	8 cut(s)	271, 328, 442, 508, 547, 579, 631, 676
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	2 cut(s)	767, 788
AlwI	GGATC	1 cut(s)	402
AoxI	GGCC	4 cut(s)	54, 261, 400, 812
ApeKI	GCWGC	1 cut(s)	209
ApoI	RAATTY	1 cut(s)	843
AspS9I	GGNCC	3 cut(s)	115, 707, 812
AsuHPI	GGTGA	3 cut(s)	81, 158, 527
AvaII	GGWCC	2 cut(s)	115, 707
BanII	GRGCYC	1 cut(s)	273
BbrPI	CACGTG	1 cut(s)	85
BbsI	GAAGAC	2 cut(s)	188, 459
Bbv12I	GWGCWC	1 cut(s)	273
BbvCI	CCTCAGC	2 cut(s)	404, 614
BbvI	GCAGC	1 cut(s)	196
BccI	CCATC	1 cut(s)	512
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	767, 788
BfaI	CTAG	2 cut(s)	351, 850
BfmI	CTRYAG	1 cut(s)	548
BisI	GCNGC	1 cut(s)	210
BlpI	GCTNAGC	1 cut(s)	580
BlsI	GCNGC	1 cut(s)	211
Bme18I	GGWCC	2 cut(s)	115, 707
BmgT120I	GGNCC	3 cut(s)	115, 707, 812
BmiI	GGNNCC	3 cut(s)	116, 117, 709
BmsI	GCATC	2 cut(s)	277, 600
BpiI	GAAGAC	2 cut(s)	188, 459
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
Bpu10I	CCTNAGC	3 cut(s)	404, 614, 677
Bpu1102I	GCTNAGC	1 cut(s)	580
BpuEI	CTTGAG	1 cut(s)	644
BsaAI	YACGTR	1 cut(s)	85
BsaBI	GATNNNNATC	1 cut(s)	429
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 321
Bse118I	RCCGGY	2 cut(s)	52, 216
Bse1I	ACTGG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	429
BseGI	GGATG	1 cut(s)	757
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	2 cut(s)	59, 321
BseMII	CTCAG	3 cut(s)	200, 418, 605
BseNI	ACTGG	1 cut(s)	459
BseRI	GAGGAG	6 cut(s)	557, 659, 738, 741, 744, 747
BseXI	GCAGC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	4 cut(s)	56, 263, 402, 814
BsiHKAI	GWGCWC	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	53, 217
BslFI	GGGAC	3 cut(s)	24, 128, 693
BslI	CCNNNNNNNGG	2 cut(s)	59, 321
BsmAI	GTCTC	2 cut(s)	767, 788
BsmBI	CGTCTC	1 cut(s)	788
BsmFI	GGGAC	3 cut(s)	24, 128, 693
BsmI	GAATGC	1 cut(s)	211
BsnI	GGCC	4 cut(s)	56, 263, 402, 814
Bsp1286I	GDGCHC	1 cut(s)	273
Bsp143I	GATC	3 cut(s)	394, 424, 430
Bsp1720I	GCTNAGC	1 cut(s)	580
BspACI	CCGC	3 cut(s)	29, 196, 408
BspANI	GGCC	4 cut(s)	56, 263, 402, 814
BspCNI	CTCAG	3 cut(s)	199, 417, 606
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	3 cut(s)	116, 117, 709
BspPI	GGATC	1 cut(s)	402
BsrFI	RCCGGY	2 cut(s)	52, 216
BsrI	ACTGG	1 cut(s)	459
BssAI	RCCGGY	2 cut(s)	52, 216
BssMI	GATC	3 cut(s)	394, 424, 430
Bst4CI	ACNGT	1 cut(s)	374
Bst6I	CTCTTC	2 cut(s)	636, 741
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	4 cut(s)	214, 218, 444, 695
BstDEI	CTNAG	6 cut(s)	186, 404, 511, 580, 614, 677
BstF5I	GGATG	1 cut(s)	757
BstFNI	CGCG	1 cut(s)	105
BstKTI	GATC	3 cut(s)	397, 427, 433
BstMAI	GTCTC	2 cut(s)	767, 788
BstMBI	GATC	3 cut(s)	394, 424, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	296, 619, 628
BstNSI	RCATGY	2 cut(s)	175, 697
BstSFI	CTRYAG	1 cut(s)	548
BstUI	CGCG	1 cut(s)	105
BstV1I	GCAGC	1 cut(s)	196
BstV2I	GAAGAC	2 cut(s)	188, 459
BstXI	CCANNNNNNTGG	1 cut(s)	466
BsuRI	GGCC	4 cut(s)	56, 263, 402, 814
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	757
Cac8I	GCNNGC	4 cut(s)	214, 218, 444, 695
Cfr10I	RCCGGY	2 cut(s)	52, 216
Cfr13I	GGNCC	3 cut(s)	115, 707, 812
Csp6I	GTAC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CviAII	CATG	5 cut(s)	33, 172, 466, 531, 694
CviQI	GTAC	1 cut(s)	125
DdeI	CTNAG	6 cut(s)	186, 404, 511, 580, 614, 677
DpnI	GATC	3 cut(s)	396, 426, 432
DpnII	GATC	3 cut(s)	394, 424, 430
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	2 cut(s)	636, 741
EarI	CTCTTC	2 cut(s)	636, 741
Ecl136II	GAGCTC	1 cut(s)	271
Eco147I	AGGCCT	2 cut(s)	263, 402
Eco24I	GRGCYC	1 cut(s)	273
Eco47I	GGWCC	2 cut(s)	115, 707
Eco53kI	GAGCTC	1 cut(s)	271
Eco57I	CTGAAG	2 cut(s)	275, 312
Eco72I	CACGTG	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	271
EcoO109I	RGGNCCY	1 cut(s)	115
EcoT38I	GRGCYC	1 cut(s)	273
Esp3I	CGTCTC	1 cut(s)	788
FaeI	CATG	5 cut(s)	36, 175, 469, 534, 697
FaiI	YATR	9 cut(s)	34, 173, 333, 435, 437, 467, 532, 695, 785
FalI	AAGNNNNNCTT	2 cut(s)	248, 280
FaqI	GGGAC	3 cut(s)	24, 128, 693
FatI	CATG	5 cut(s)	32, 171, 465, 530, 693
FauNDI	CATATG	1 cut(s)	435
Fnu4HI	GCNGC	1 cut(s)	210
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	210
FspBI	CTAG	2 cut(s)	351, 850
GluI	GCNGC	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	56, 263, 402, 814
HapII	CCGG	2 cut(s)	53, 217
Hin1II	CATG	5 cut(s)	36, 175, 469, 534, 697
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HindIII	AAGCTT	1 cut(s)	577
HinfI	GANTC	4 cut(s)	149, 184, 491, 527
HpaII	CCGG	2 cut(s)	53, 217
HphI	GGTGA	3 cut(s)	81, 158, 527
Hpy166II	GTNNAC	2 cut(s)	13, 125
Hpy188I	TCNGA	1 cut(s)	189
Hpy188III	TCNNGA	3 cut(s)	232, 422, 428
Hpy8I	GTNNAC	2 cut(s)	13, 125
HpyAV	CCTTC	5 cut(s)	234, 238, 253, 385, 631
HpyCH4III	ACNGT	1 cut(s)	374
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	2 cut(s)	299, 697
HpyF10VI	GCNNNNNNNGC	3 cut(s)	296, 619, 628
HpyF3I	CTNAG	6 cut(s)	186, 404, 511, 580, 614, 677
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	5 cut(s)	36, 175, 469, 534, 697
KflI	GGGWCCC	1 cut(s)	115
KroI	GCCGGC	1 cut(s)	216
KroNI	GCCGGC	1 cut(s)	218
Kzo9I	GATC	3 cut(s)	394, 424, 430
LmnI	GCTCC	4 cut(s)	439, 544, 571, 619
LpnPI	CCDG	7 cut(s)	45, 66, 108, 230, 331, 472, 620
Lsp1109I	GCAGC	1 cut(s)	196
LweI	GCATC	2 cut(s)	277, 600
MaeI	CTAG	2 cut(s)	351, 850
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	3 cut(s)	71, 87, 223
MalI	GATC	3 cut(s)	396, 426, 432
MboI	GATC	3 cut(s)	394, 424, 430
MboII	GAAGA	8 cut(s)	193, 268, 464, 486, 653, 749, 752, 758
MfeI	CAATTG	2 cut(s)	566, 702
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	5 cut(s)	566, 588, 702, 800, 843
MluI	ACGCGT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	178
MroNI	GCCGGC	1 cut(s)	216
MseI	TTAA	1 cut(s)	168
MslI	CAYNNNNRTG	2 cut(s)	31, 104
MspA1I	CMGCKG	1 cut(s)	408
MspI	CCGG	2 cut(s)	53, 217
MunI	CAATTG	2 cut(s)	566, 702
Mva1269I	GAATGC	1 cut(s)	211
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	3 cut(s)	296, 619, 628
NaeI	GCCGGC	1 cut(s)	218
NdeI	CATATG	1 cut(s)	435
NdeII	GATC	3 cut(s)	394, 424, 430
NgoMIV	GCCGGC	1 cut(s)	216
NlaIII	CATG	5 cut(s)	36, 175, 469, 534, 697
NlaIV	GGNNCC	3 cut(s)	116, 117, 709
NmuCI	GTSAC	2 cut(s)	87, 223
NspI	RCATGY	2 cut(s)	175, 697
OliI	CACNNNNGTG	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	697
PceI	AGGCCT	2 cut(s)	263, 402
PciI	ACATGT	1 cut(s)	171
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	1 cut(s)	211
PdiI	GCCGGC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	149, 491, 527
PkrI	GCNGC	1 cut(s)	211
PleI	GAGTC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	85
PmlI	CACGTG	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	115
PscI	ACATGT	1 cut(s)	171
Psp124BI	GAGCTC	1 cut(s)	273
Psp5II	RGGWCCY	1 cut(s)	115
PspCI	CACGTG	1 cut(s)	85
PspN4I	GGNNCC	3 cut(s)	116, 117, 709
PspPI	GGNCC	3 cut(s)	115, 707, 812
PspPPI	RGGWCCY	1 cut(s)	115
RsaI	GTAC	1 cut(s)	126
RsaNI	GTAC	1 cut(s)	125
RseI	CAYNNNNRTG	2 cut(s)	31, 104
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	168
SatI	GCNGC	1 cut(s)	210
Sau3AI	GATC	3 cut(s)	394, 424, 430
Sau96I	GGNCC	3 cut(s)	115, 707, 812
SchI	GAGTC	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	273
SfaNI	GCATC	2 cut(s)	277, 600
SfcI	CTRYAG	1 cut(s)	548
SinI	GGWCC	2 cut(s)	115, 707
SmiMI	CAYNNNNRTG	2 cut(s)	31, 104
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SphI	GCATGC	1 cut(s)	697
Sse9I	AATT	5 cut(s)	566, 588, 702, 800, 843
SseBI	AGGCCT	2 cut(s)	263, 402
SsiI	CCGC	3 cut(s)	29, 196, 408
SspMI	CTAG	2 cut(s)	351, 850
SstI	GAGCTC	1 cut(s)	273
StuI	AGGCCT	2 cut(s)	263, 402
TaaI	ACNGT	1 cut(s)	374
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	3 cut(s)	233, 341, 536
TasI	AATT	5 cut(s)	566, 588, 702, 800, 843
TfiI	GAWTC	3 cut(s)	149, 491, 527
Tru1I	TTAA	1 cut(s)	168
Tru9I	TTAA	1 cut(s)	168
TseFI	GTSAC	2 cut(s)	87, 223
TseI	GCWGC	1 cut(s)	209
Tsp45I	GTSAC	2 cut(s)	87, 223
TspDTI	ATGAA	5 cut(s)	206, 465, 650, 759, 796
TspGWI	ACGGA	1 cut(s)	812
VpaK11BI	GGWCC	2 cut(s)	115, 707
XapI	RAATTY	1 cut(s)	843
XceI	RCATGY	2 cut(s)	175, 697
XspI	CTAG	2 cut(s)	351, 850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.