Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Reverse (-)

739849 .. 744249

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01240.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGTTAGGGGGAAGACTCAGATGAAGCGGATTGAGAATGCGGCGAGCCGGCAGGTGACCTTCTCGAAGAGAAGGAGTGGACTGCTGAAGAAGGCCTTTGAGCTTTCGGTTCTCTGCGATGCTGAGGTTGCACTCATCATTTTCTCCAACAGAGGGAAGCTCTTTGAGTTTTCGAGCTGTTCTAGTCTGAACAAGACAATAGACCGTTTCCAAAAGAGAGCGAAAGATCAAGGCCTTAGCGGTAAAGCAGCTCGAGATCACGATCATATGGAGCTTGCTAATGAAGACACCAGTAGCATGGCAATGAGAATTGAGTTGATTGAATCTTCTAAACGGAAGCTCCTTGGTGATGGTTTAGAATCATGTTCGATAGATGAGCTACATCAGTTGGAGAAGGATTTGGAGCGAAGCTTAGCCAAAATTAGAGATCAAAAGAACCTGATGCTGAGGGAGCAGATACAGCAGCTGAAGGAAAAGGAGATAAGCCTACTCGAAGAAAATGCAGAGCTTATGGAGAAGTGTGGCATGCAACAAATTGGTCCACCAAGCAATGGAGAACAATATGGAGTTGAAGATGATGATGTAGAAACCGAGAGCGACTCTCAAAATATGGAAGTGGAGACGGAATTATTCATCGGGCCACCCAAAAGACAAAGAAGTGCCAAGAAAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

226

Amino Acids

25.58

Weight (kDa)

5.82

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	5 - 85	7.3e-20	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	43
Acc36I	ACCTGC	1 cut(s)	43
AccB7I	CCANNNNNTGG	1 cut(s)	551
AciI	CCGC	3 cut(s)	28, 41, 240
AcsI	RAATTY	1 cut(s)	669
AcuI	CTGAAG	2 cut(s)	107, 488
AfiI	CCNNNNNNNGG	2 cut(s)	153, 551
AgsI	TTSAA	2 cut(s)	323, 572
Alw26I	GTCTC	1 cut(s)	614
AlwNI	CAGNNNCTG	1 cut(s)	466
Ama87I	CYCGRG	1 cut(s)	252
AoxI	GGCC	3 cut(s)	93, 232, 638
ApeKI	GCWGC	2 cut(s)	248, 463
ApoI	RAATTY	1 cut(s)	669
AspS9I	GGNCC	2 cut(s)	539, 638
AsuHPI	GGTGA	2 cut(s)	67, 359
AvaI	CYCGRG	1 cut(s)	252
AvaII	GGWCC	1 cut(s)	539
BbsI	GAAGAC	2 cut(s)	20, 291
BbvCI	CCTCAGC	2 cut(s)	123, 446
BbvI	GCAGC	2 cut(s)	260, 475
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BcoDI	GTCTC	1 cut(s)	614
BfaI	CTAG	2 cut(s)	183, 676
BfuAI	ACCTGC	1 cut(s)	43
BisI	GCNGC	3 cut(s)	42, 249, 464
BlpI	GCTNAGC	1 cut(s)	412
BlsI	GCNGC	3 cut(s)	43, 250, 465
Bme18I	GGWCC	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	252
BmgT120I	GGNCC	2 cut(s)	539, 638
BmsI	GCATC	2 cut(s)	109, 432
BpiI	GAAGAC	2 cut(s)	20, 291
BplI	GAGNNNNNCTC	6 cut(s)	144, 176, 584, 616, 586, 618
Bpu10I	CCTNAGC	3 cut(s)	123, 236, 446
Bpu1102I	GCTNAGC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	2 cut(s)	324, 354
Bsc4I	CCNNNNNNNGG	2 cut(s)	153, 551
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	291
Bse3DI	GCAATG	2 cut(s)	309, 556
Bse8I	GATNNNNATC	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	343
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	2 cut(s)	153, 551
BseMI	GCAATG	2 cut(s)	309, 556
BseMII	CTCAG	3 cut(s)	32, 114, 437
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	2 cut(s)	260, 475
BshFI	GGCC	3 cut(s)	95, 234, 640
BsiHKCI	CYCGRG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	153, 551
BsmAI	GTCTC	1 cut(s)	614
BsmBI	CGTCTC	1 cut(s)	614
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	95, 234, 640
BsoBI	CYCGRG	1 cut(s)	252
Bsp143I	GATC	4 cut(s)	226, 256, 262, 427
Bsp1720I	GCTNAGC	1 cut(s)	412
BspACI	CCGC	3 cut(s)	28, 41, 240
BspANI	GGCC	3 cut(s)	95, 234, 640
BspCNI	CTCAG	3 cut(s)	31, 115, 438
BspMI	ACCTGC	1 cut(s)	43
BsrDI	GCAATG	2 cut(s)	309, 556
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	4 cut(s)	226, 256, 262, 427
BssT1I	CCWWGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	4 cut(s)	46, 50, 276, 527
BstDEI	CTNAG	5 cut(s)	18, 123, 236, 412, 446
BstEII	GGTNACC	1 cut(s)	55
BstKTI	GATC	4 cut(s)	229, 259, 265, 430
BstMAI	GTCTC	1 cut(s)	614
BstMBI	GATC	4 cut(s)	226, 256, 262, 427
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
BstNSI	RCATGY	1 cut(s)	529
BstPI	GGTNACC	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	260, 475
BstV2I	GAAGAC	2 cut(s)	20, 291
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	3 cut(s)	95, 234, 640
BtgZI	GCGATG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	43
Cac8I	GCNNGC	4 cut(s)	46, 50, 276, 527
CaiI	CAGNNNCTG	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	2 cut(s)	539, 638
CviAII	CATG	3 cut(s)	298, 363, 526
DdeI	CTNAG	5 cut(s)	18, 123, 236, 412, 446
DpnI	GATC	4 cut(s)	228, 258, 264, 429
DpnII	GATC	4 cut(s)	226, 256, 262, 427
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	343
Eco147I	AGGCCT	2 cut(s)	95, 234
Eco47I	GGWCC	1 cut(s)	539
Eco57I	CTGAAG	2 cut(s)	107, 488
Eco88I	CYCGRG	1 cut(s)	252
Eco91I	GGTNACC	1 cut(s)	55
EcoO65I	GGTNACC	1 cut(s)	55
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
Esp3I	CGTCTC	1 cut(s)	614
FaeI	CATG	3 cut(s)	301, 366, 529
FaiI	YATR	8 cut(s)	267, 269, 299, 364, 512, 527, 564, 611
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	3 cut(s)	297, 362, 525
FauNDI	CATATG	1 cut(s)	267
Fnu4HI	GCNGC	3 cut(s)	42, 249, 464
Fsp4HI	GCNGC	3 cut(s)	42, 249, 464
FspBI	CTAG	2 cut(s)	183, 676
GluI	GCNGC	3 cut(s)	42, 249, 464
HaeIII	GGCC	3 cut(s)	95, 234, 640
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	3 cut(s)	301, 366, 529
HindIII	AAGCTT	1 cut(s)	409
HinfI	GANTC	4 cut(s)	16, 323, 359, 599
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	2 cut(s)	67, 359
Hpy166II	GTNNAC	2 cut(s)	80, 542
Hpy188I	TCNGA	2 cut(s)	21, 189
Hpy188III	TCNNGA	3 cut(s)	64, 254, 260
Hpy8I	GTNNAC	2 cut(s)	80, 542
HpyAV	CCTTC	5 cut(s)	66, 70, 85, 388, 463
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	3 cut(s)	131, 503, 529
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
HpyF3I	CTNAG	5 cut(s)	18, 123, 236, 412, 446
Hsp92II	CATG	3 cut(s)	301, 366, 529
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	4 cut(s)	226, 256, 262, 427
LmnI	GCTCC	4 cut(s)	271, 345, 403, 451
LpnPI	CCDG	4 cut(s)	38, 62, 304, 452
Lsp1109I	GCAGC	2 cut(s)	260, 475
LweI	GCATC	2 cut(s)	109, 432
MaeI	CTAG	2 cut(s)	183, 676
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	4 cut(s)	228, 258, 264, 429
MboI	GATC	4 cut(s)	226, 256, 262, 427
MboII	GAAGA	7 cut(s)	25, 79, 100, 296, 318, 506, 584
MluCI	AATT	5 cut(s)	309, 420, 534, 626, 669
MlyI	GAGTC	2 cut(s)	10, 593
MmeI	TCCRAC	2 cut(s)	171, 369
MnlI	CCTC	3 cut(s)	118, 146, 441
MroNI	GCCGGC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	466
MspI	CCGG	1 cut(s)	49
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
NaeI	GCCGGC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	4 cut(s)	226, 256, 262, 427
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	3 cut(s)	301, 366, 529
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	529
PaeI	GCATGC	1 cut(s)	529
PaeR7I	CTCGAG	1 cut(s)	252
PaqCI	CACCTGC	1 cut(s)	43
PceI	AGGCCT	2 cut(s)	95, 234
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	323, 359
PflMI	CCANNNNNTGG	1 cut(s)	551
PkrI	GCNGC	3 cut(s)	43, 250, 465
PleI	GAGTC	2 cut(s)	10, 593
PpsI	GAGTC	2 cut(s)	10, 593
PspEI	GGTNACC	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	539, 638
PstNI	CAGNNNCTG	1 cut(s)	466
PvuII	CAGCTG	1 cut(s)	466
RseI	CAYNNNNRTG	1 cut(s)	302
SatI	GCNGC	3 cut(s)	42, 249, 464
Sau3AI	GATC	4 cut(s)	226, 256, 262, 427
Sau96I	GGNCC	2 cut(s)	539, 638
SchI	GAGTC	2 cut(s)	10, 593
SfaNI	GCATC	2 cut(s)	109, 432
Sfr274I	CTCGAG	1 cut(s)	252
SinI	GGWCC	1 cut(s)	539
SlaI	CTCGAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	252
SmoI	CTYRAG	1 cut(s)	252
SphI	GCATGC	1 cut(s)	529
Sse9I	AATT	5 cut(s)	309, 420, 534, 626, 669
SseBI	AGGCCT	2 cut(s)	95, 234
SsiI	CCGC	3 cut(s)	28, 41, 240
SspMI	CTAG	2 cut(s)	183, 676
StuI	AGGCCT	2 cut(s)	95, 234
StyI	CCWWGG	1 cut(s)	343
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	5 cut(s)	65, 173, 253, 368, 492
TasI	AATT	5 cut(s)	309, 420, 534, 626, 669
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	323, 359
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	248, 463
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	38, 297, 622
TspGWI	ACGGA	2 cut(s)	349, 638
Van91I	CCANNNNNTGG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	1 cut(s)	669
XceI	RCATGY	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	252
XspI	CTAG	2 cut(s)	183, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.