Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

14798656 .. 14806301

Gene Structure 7646 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG184500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGTTCGCTGTTGAAGAGGGCAAAGCACCGCCATGCCGTCCCCAAGAGCCACCGGCCACAGAGGTTGTCAGTAACTGTAGGCACGTGTCACCACCAGACACACGCGTGGAACGGACCGTTGTGTATGTACCTCCACTTTCCACATTGGGTGAATCAAAGAGTGAGTGGCCTAACATGTGGAAGCTCTTAGGTGATGGTTTAGAATCATGTTCGATAGACGAGCTACAACAGATAGAAAACCAATTGGAGCGAAGCTTAGCCAAAATTAGAGATAGAAAGAACCTGATGCTGAGGGAGCAGATAGAGCTGATGAAGGAAGAGGAGAAAAGCCTACTCAAGCAAAATGTTGAGCTAAGGGAAAAGTGTGGCATGCAACCAATTGGTCCCCCAAACAATAGAGGAGGAGGAGAAGAAGAAGATGAAGAGGATGATGTAGAAACCGAGAGCGAGACTGAAACTATGGAAGTGGAGACGGAATTGTTCATCGGGCCACCCAAAAGACAAAGAAGTTCCAAGAAAATTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

175

Amino Acids

19.94

Weight (kDa)

4.7

Isoelectric Point (pI)

68.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
K-box	PF01486	61 - 122	7.6e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	105
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	519
AcvI	CACGTG	1 cut(s)	85
AfaI	GTAC	1 cut(s)	129
AflIII	ACRYGT	3 cut(s)	84, 103, 174
AgsI	TTSAA	1 cut(s)	14
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	5 cut(s)	184, 223, 255, 307, 352
AluI	AGCT	5 cut(s)	184, 223, 255, 307, 352
Alw26I	GTCTC	2 cut(s)	443, 464
AlwNI	CAGNNNCTG	1 cut(s)	75
AoxI	GGCC	3 cut(s)	54, 167, 488
ApoI	RAATTY	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	114, 383, 488
AsuHPI	GGTGA	3 cut(s)	81, 161, 203
AvaII	GGWCC	2 cut(s)	114, 383
BbrPI	CACGTG	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	290
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	443, 464
BfaI	CTAG	1 cut(s)	526
BfmI	CTRYAG	1 cut(s)	76
BlpI	GCTNAGC	1 cut(s)	256
Bme18I	GGWCC	2 cut(s)	114, 383
BmgT120I	GGNCC	3 cut(s)	114, 383, 488
BmiI	GGNNCC	1 cut(s)	385
BmsI	GCATC	1 cut(s)	276
Bpu10I	CCTNAGC	2 cut(s)	290, 353
Bpu1102I	GCTNAGC	1 cut(s)	256
BpuEI	CTTGAG	1 cut(s)	320
BsaAI	YACGTR	1 cut(s)	85
Bse118I	RCCGGY	1 cut(s)	52
BseGI	GGATG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	281
BseRI	GAGGAG	4 cut(s)	335, 414, 417, 420
Bsh1236I	CGCG	1 cut(s)	105
BshFI	GGCC	3 cut(s)	56, 169, 490
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	2 cut(s)	24, 369
BsmAI	GTCTC	2 cut(s)	443, 464
BsmBI	CGTCTC	1 cut(s)	464
BsmFI	GGGAC	2 cut(s)	24, 369
BsnI	GGCC	3 cut(s)	56, 169, 490
Bsp1720I	GCTNAGC	1 cut(s)	256
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	3 cut(s)	56, 169, 490
BspCNI	CTCAG	1 cut(s)	282
BspFNI	CGCG	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	52
BssAI	RCCGGY	1 cut(s)	52
Bst4CI	ACNGT	2 cut(s)	77, 118
Bst6I	CTCTTC	3 cut(s)	9, 312, 417
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	4 cut(s)	187, 256, 290, 353
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	1 cut(s)	105
BstMAI	GTCTC	2 cut(s)	443, 464
BstMWI	GCNNNNNNNGC	2 cut(s)	295, 304
BstNSI	RCATGY	2 cut(s)	178, 373
BstSFI	CTRYAG	1 cut(s)	76
BstUI	CGCG	1 cut(s)	105
BsuRI	GGCC	3 cut(s)	56, 169, 490
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	3 cut(s)	114, 383, 488
CpoI	CGGWCCG	1 cut(s)	114
Csp6I	GTAC	1 cut(s)	128
CspCI	CAANNNNNGTGG	2 cut(s)	46, 81
CspI	CGGWCCG	1 cut(s)	114
CviAII	CATG	4 cut(s)	33, 175, 207, 370
CviQI	GTAC	1 cut(s)	128
DdeI	CTNAG	4 cut(s)	187, 256, 290, 353
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	3 cut(s)	9, 312, 417
EarI	CTCTTC	3 cut(s)	9, 312, 417
Eco47I	GGWCC	2 cut(s)	114, 383
Eco72I	CACGTG	1 cut(s)	85
Esp3I	CGTCTC	1 cut(s)	464
FaeI	CATG	4 cut(s)	36, 178, 210, 373
FaiI	YATR	6 cut(s)	34, 126, 176, 208, 371, 461
FaqI	GGGAC	2 cut(s)	24, 369
FatI	CATG	4 cut(s)	32, 174, 206, 369
FokI	GGATG	1 cut(s)	440
FspBI	CTAG	1 cut(s)	526
HaeIII	GGCC	3 cut(s)	56, 169, 490
HapII	CCGG	1 cut(s)	53
Hin1II	CATG	4 cut(s)	36, 178, 210, 373
HindIII	AAGCTT	1 cut(s)	253
HinfI	GANTC	2 cut(s)	152, 203
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	3 cut(s)	81, 161, 203
HpyAV	CCTTC	1 cut(s)	307
HpyCH4III	ACNGT	2 cut(s)	77, 118
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	373
HpyF10VI	GCNNNNNNNGC	2 cut(s)	295, 304
HpyF3I	CTNAG	4 cut(s)	187, 256, 290, 353
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	36, 178, 210, 373
LmnI	GCTCC	2 cut(s)	247, 295
LpnPI	CCDG	3 cut(s)	66, 108, 296
LweI	GCATC	1 cut(s)	276
MaeI	CTAG	1 cut(s)	526
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	71, 87
MboII	GAAGA	6 cut(s)	26, 329, 422, 425, 428, 434
MfeI	CAATTG	2 cut(s)	242, 378
MluCI	AATT	5 cut(s)	242, 264, 378, 476, 519
MluI	ACGCGT	1 cut(s)	103
MnlI	CCTC	9 cut(s)	10, 55, 141, 285, 313, 392, 395, 398, 418
MslI	CAYNNNNRTG	2 cut(s)	31, 104
MspI	CCGG	1 cut(s)	53
MunI	CAATTG	2 cut(s)	242, 378
MvnI	CGCG	1 cut(s)	105
MwoI	GCNNNNNNNGC	2 cut(s)	295, 304
NlaIII	CATG	4 cut(s)	36, 178, 210, 373
NlaIV	GGNNCC	1 cut(s)	385
NmuCI	GTSAC	1 cut(s)	87
NspI	RCATGY	2 cut(s)	178, 373
OliI	CACNNNNGTG	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	373
PciI	ACATGT	1 cut(s)	174
PfeI	GAWTC	2 cut(s)	152, 203
PmaCI	CACGTG	1 cut(s)	85
PmlI	CACGTG	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	85
PscI	ACATGT	1 cut(s)	174
PspCI	CACGTG	1 cut(s)	85
PspN4I	GGNNCC	1 cut(s)	385
PspPI	GGNCC	3 cut(s)	114, 383, 488
PstNI	CAGNNNCTG	1 cut(s)	75
RsaI	GTAC	1 cut(s)	129
RsaNI	GTAC	1 cut(s)	128
RseI	CAYNNNNRTG	2 cut(s)	31, 104
Rsr2I	CGGWCCG	1 cut(s)	114
RsrII	CGGWCCG	1 cut(s)	114
Sau96I	GGNCC	3 cut(s)	114, 383, 488
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	2 cut(s)	114, 383
SmiMI	CAYNNNNRTG	2 cut(s)	31, 104
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
SphI	GCATGC	1 cut(s)	373
Sse9I	AATT	5 cut(s)	242, 264, 378, 476, 519
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	1 cut(s)	526
TaaI	ACNGT	2 cut(s)	77, 118
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	212
TasI	AATT	5 cut(s)	242, 264, 378, 476, 519
TfiI	GAWTC	2 cut(s)	152, 203
TseFI	GTSAC	1 cut(s)	87
Tsp45I	GTSAC	1 cut(s)	87
TspDTI	ATGAA	3 cut(s)	326, 435, 472
TspGWI	ACGGA	2 cut(s)	127, 488
VpaK11BI	GGWCC	2 cut(s)	114, 383
XapI	RAATTY	1 cut(s)	519
XceI	RCATGY	2 cut(s)	178, 373
XspI	CTAG	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.