Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Reverse (-)

12023824 .. 12028004

Gene Structure 4181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGTGAGGGGCAAAACGGAGATGAAGAGGATAGAGAACGCAACAAGCAGGCAAGTGACGTTTTCGAAGAGAAGAAATGGACTCTTGAAGAAAGCCTTCGAATTATCGGTCCTTTGTGATGCTGAAGTTGCTTTGGTTATCTTCTCTCCAAGATCCAAACTCTATGAGTTCTCTAGCTCTAGTATAGCAGCAACAATTGAACGCTATCAGAGACGAATAAAAGAAATTGGGAATAATCATAAGAGAAATGATAATTCTCAGCAAGCGAGAGACGAAACATCTGGATTGACAAAAAAGATTGAACAGCTAGAGATATCTAAACGAAAATTGCTTGGAGAAGGCATTGATGCATGTTCCATCGAGGAGCTGCAACAGTTAGAGAATCAGTTGGACCGAAGCTTGAGCAGGATAAGAGCCAAGAAGTACCAATTACTCCGTGAAGAAATTGAGAAGTTGAAGGCAGAGGAGAGGAATCTCGTTAAGGAAAATAAAGATCTGAAGGAGAAGTGGCTTGGAATGGGAACAGCAACAATAGCATCATCACAATCAACGTTATCATCATCAGAAGTGAACATAGATGACAATATGGAAGTGGAGACTGGTTTGTTCATTGGACCTCCTGAGACAAGACAATCCAAAAAATTCCCTCCTCAAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

219

Amino Acids

25.05

Weight (kDa)

9.35

Isoelectric Point (pI)

70.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	4.2e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	83 - 169	1.8e-25	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	551
AclWI	GGATC	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	2 cut(s)	144, 518
AfaI	GTAC	1 cut(s)	425
AgsI	TTSAA	4 cut(s)	88, 200, 302, 457
AluBI	AGCT	4 cut(s)	177, 307, 367, 399
AluI	AGCT	4 cut(s)	177, 307, 367, 399
Alw26I	GTCTC	4 cut(s)	205, 264, 590, 617
AlwI	GGATC	1 cut(s)	147
ApeKI	GCWGC	2 cut(s)	188, 367
ApoI	RAATTY	1 cut(s)	641
ArsI	GACNNNNNNTTYG	2 cut(s)	93, 125
Asp700I	GAANNNNTTC	1 cut(s)	95
AspS9I	GGNCC	3 cut(s)	109, 391, 614
AsuHPI	GGTGA	1 cut(s)	16
AsuII	TTCGAA	2 cut(s)	65, 99
AvaII	GGWCC	3 cut(s)	109, 391, 614
BbvI	GCAGC	2 cut(s)	200, 354
BccI	CCATC	1 cut(s)	365
BcoDI	GTCTC	4 cut(s)	205, 264, 590, 617
BfaI	CTAG	3 cut(s)	174, 180, 308
BglII	AGATCT	1 cut(s)	493
BisI	GCNGC	2 cut(s)	189, 368
BlsI	GCNGC	2 cut(s)	190, 369
Bme18I	GGWCC	3 cut(s)	109, 391, 614
BmgT120I	GGNCC	3 cut(s)	109, 391, 614
BmsI	GCATC	3 cut(s)	109, 337, 545
Bpu14I	TTCGAA	2 cut(s)	65, 99
BpuEI	CTTGAG	1 cut(s)	421
Bse1I	ACTGG	1 cut(s)	604
BseMII	CTCAG	2 cut(s)	272, 612
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	3 cut(s)	377, 479, 639
BseXI	GCAGC	2 cut(s)	200, 354
BsmAI	GTCTC	4 cut(s)	205, 264, 590, 617
BsmBI	CGTCTC	2 cut(s)	205, 264
Bsp119I	TTCGAA	2 cut(s)	65, 99
Bsp143I	GATC	2 cut(s)	152, 493
BspCNI	CTCAG	2 cut(s)	271, 613
BspPI	GGATC	1 cut(s)	147
BspT104I	TTCGAA	2 cut(s)	65, 99
BsrI	ACTGG	1 cut(s)	604
BssMI	GATC	2 cut(s)	152, 493
Bst4CI	ACNGT	1 cut(s)	375
Bst6I	CTCTTC	2 cut(s)	20, 62
BstBI	TTCGAA	2 cut(s)	65, 99
BstC8I	GCNNGC	2 cut(s)	50, 264
BstDEI	CTNAG	2 cut(s)	258, 621
BstKTI	GATC	2 cut(s)	155, 496
BstMAI	GTCTC	4 cut(s)	205, 264, 590, 617
BstMBI	GATC	2 cut(s)	152, 493
BstMWI	GCNNNNNNNGC	2 cut(s)	128, 533
BstNSI	RCATGY	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	200, 354
BstX2I	RGATCY	2 cut(s)	152, 493
BstYI	RGATCY	2 cut(s)	152, 493
Cac8I	GCNNGC	2 cut(s)	50, 264
Cfr13I	GGNCC	3 cut(s)	109, 391, 614
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	7 cut(s)	95, 177, 307, 367, 399, 416, 511
CviKI_1	RGCY	7 cut(s)	95, 177, 307, 367, 399, 416, 511
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	2 cut(s)	258, 621
DpnI	GATC	2 cut(s)	154, 495
DpnII	GATC	2 cut(s)	152, 493
Eam1104I	CTCTTC	2 cut(s)	20, 62
EarI	CTCTTC	2 cut(s)	20, 62
Eco32I	GATATC	1 cut(s)	315
Eco47I	GGWCC	3 cut(s)	109, 391, 614
Eco57I	CTGAAG	2 cut(s)	144, 518
EcoRV	GATATC	1 cut(s)	315
EcoT22I	ATGCAT	1 cut(s)	352
Esp3I	CGTCTC	2 cut(s)	205, 264
FaeI	CATG	1 cut(s)	354
FaiI	YATR	6 cut(s)	165, 185, 240, 352, 575, 587
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	1 cut(s)	350
Fnu4HI	GCNGC	2 cut(s)	189, 368
Fsp4HI	GCNGC	2 cut(s)	189, 368
FspBI	CTAG	3 cut(s)	174, 180, 308
GluI	GCNGC	2 cut(s)	189, 368
Hin1II	CATG	1 cut(s)	354
HindIII	AAGCTT	1 cut(s)	397
HinfI	GANTC	3 cut(s)	81, 382, 472
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	3 cut(s)	210, 498, 565
Hpy188III	TCNNGA	3 cut(s)	85, 282, 620
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	4 cut(s)	106, 332, 451, 493
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	2 cut(s)	59, 551
HpyCH4V	TGCA	2 cut(s)	350, 370
HpyF10VI	GCNNNNNNNGC	2 cut(s)	128, 533
HpyF3I	CTNAG	2 cut(s)	258, 621
HpySE526I	ACGT	2 cut(s)	59, 551
Hsp92II	CATG	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	152, 493
LmnI	GCTCC	1 cut(s)	364
LpnPI	CCDG	5 cut(s)	34, 267, 391, 585, 633
Lsp1109I	GCAGC	2 cut(s)	200, 354
LweI	GCATC	3 cut(s)	109, 337, 545
MaeI	CTAG	3 cut(s)	174, 180, 308
MaeII	ACGT	2 cut(s)	59, 551
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	2 cut(s)	154, 495
MboI	GATC	2 cut(s)	152, 493
MboII	GAAGA	6 cut(s)	37, 79, 84, 100, 133, 452
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	152, 493
MluCI	AATT	9 cut(s)	101, 195, 225, 253, 326, 428, 444, 641, 655
MlyI	GAGTC	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	7 cut(s)	21, 355, 457, 462, 627, 657, 660
Mph1103I	ATGCAT	1 cut(s)	352
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	2 cut(s)	480, 658
MunI	CAATTG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	128, 533
NdeII	GATC	2 cut(s)	152, 493
NlaIII	CATG	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	55
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	1 cut(s)	354
NspV	TTCGAA	2 cut(s)	65, 99
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	382, 472
PkrI	GCNGC	2 cut(s)	190, 369
PleI	GAGTC	1 cut(s)	75
PpsI	GAGTC	1 cut(s)	75
Psp1406I	AACGTT	1 cut(s)	551
PspPI	GGNCC	3 cut(s)	109, 391, 614
PsuI	RGATCY	2 cut(s)	152, 493
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SaqAI	TTAA	2 cut(s)	480, 658
SatI	GCNGC	2 cut(s)	189, 368
Sau3AI	GATC	2 cut(s)	152, 493
Sau96I	GGNCC	3 cut(s)	109, 391, 614
SchI	GAGTC	1 cut(s)	75
SetI	ASST	7 cut(s)	62, 179, 309, 369, 401, 554, 619
SfaNI	GCATC	3 cut(s)	109, 337, 545
SfuI	TTCGAA	2 cut(s)	65, 99
SinI	GGWCC	3 cut(s)	109, 391, 614
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
Sse9I	AATT	9 cut(s)	101, 195, 225, 253, 326, 428, 444, 641, 655
SspMI	CTAG	3 cut(s)	174, 180, 308
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	2 cut(s)	62, 554
TaqI	TCGA	3 cut(s)	65, 99, 360
TaqII	GACCGA	2 cut(s)	97, 408
TasI	AATT	9 cut(s)	101, 195, 225, 253, 326, 428, 444, 641, 655
TfiI	GAWTC	2 cut(s)	382, 472
Tru1I	TTAA	2 cut(s)	480, 658
Tru9I	TTAA	2 cut(s)	480, 658
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	188, 367
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	2 cut(s)	38, 598
TspGWI	ACGGA	2 cut(s)	32, 425
VpaK11BI	GGWCC	3 cut(s)	109, 391, 614
XapI	RAATTY	1 cut(s)	641
XceI	RCATGY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	174, 180, 308
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.