Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

16161599 .. 16167132

Gene Structure 5534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGGTTAGGGGGAAGACTCAGATGAAGCGGATAGAGAATGCTGCGAGCCGGCAAGTGACCTTCTCGAAGCGAAGGAATGGACTGCTGAAGAAGGCCTTTGAGCTCTCGGTTCTCTGCGATGCTGAAGTTGCACTCATCATTTTCTCCACCAGAGGGAAGCTTTATGAGTTTTCGAGTTGTTCTAGTTTGAACAACACAATAGACCGTTTTCAAAAGAGAGTGAAGGATCAAGGCCTCAGCGGTAAAGCAGTTCAAGATCACGATCATATGGAGCTTGCTAATGAAGACACCAGTAGCATGGCAAAGAGGATTGAGTTTATTGAATCTTCTAAAAGGAAGCTCTTAGGTGATGGTTTAGAATCATGTTCGATAGACGAGCTACAGCAGATAGAAAACCAATTGGAGCGAAGCTTAGCCAAAATTAGAGATAGAAAGAACCTGATGCTGAGGGAGCAGATAGAGCTGATGAAGGAAGAGGTAAAACTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

163

Amino Acids

18.75

Weight (kDa)

9.17

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 57	2.8e-26	SRF-type transcription factor (DNA-binding and dimerisation domain)
K-box	PF01486	86 - 162	1.9e-18	K-box region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	28, 240
AclWI	GGATC	1 cut(s)	234
AcuI	CTGAAG	2 cut(s)	107, 144
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	4 cut(s)	190, 212, 254, 323
AluBI	AGCT	7 cut(s)	103, 160, 274, 340, 379, 411, 463
AluI	AGCT	7 cut(s)	103, 160, 274, 340, 379, 411, 463
Alw21I	GWGCWC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	93, 232
ApeKI	GCWGC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	359
BanII	GRGCYC	1 cut(s)	105
BbsI	GAAGAC	2 cut(s)	20, 291
Bbv12I	GWGCWC	1 cut(s)	105
BbvCI	CCTCAGC	2 cut(s)	236, 446
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	344
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	380
BisI	GCNGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	412
BlsI	GCNGC	1 cut(s)	43
BmsI	GCATC	2 cut(s)	109, 432
BpiI	GAAGAC	2 cut(s)	20, 291
Bpu10I	CCTNAGC	2 cut(s)	236, 446
Bpu1102I	GCTNAGC	1 cut(s)	412
BsaBI	GATNNNNATC	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	291
Bse8I	GATNNNNATC	1 cut(s)	261
BseJI	GATNNNNATC	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMII	CTCAG	3 cut(s)	32, 250, 437
BseNI	ACTGG	1 cut(s)	291
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	2 cut(s)	95, 234
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	2 cut(s)	95, 234
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	226, 256, 262
Bsp1720I	GCTNAGC	1 cut(s)	412
BspACI	CCGC	2 cut(s)	28, 240
BspANI	GGCC	2 cut(s)	95, 234
BspCNI	CTCAG	3 cut(s)	31, 249, 438
BspPI	GGATC	1 cut(s)	234
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	291
BssAI	RCCGGY	1 cut(s)	48
BssMI	GATC	3 cut(s)	226, 256, 262
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	468
BstC8I	GCNNGC	3 cut(s)	46, 50, 276
BstDEI	CTNAG	5 cut(s)	18, 236, 343, 412, 446
BstKTI	GATC	3 cut(s)	229, 259, 265
BstMBI	GATC	3 cut(s)	226, 256, 262
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
BstSFI	CTRYAG	1 cut(s)	380
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	20, 291
BstXI	CCANNNNNNTGG	1 cut(s)	298
BsuRI	GGCC	2 cut(s)	95, 234
BtgZI	GCGATG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	46, 50, 276
Cfr10I	RCCGGY	1 cut(s)	48
CviAII	CATG	2 cut(s)	298, 363
DdeI	CTNAG	5 cut(s)	18, 236, 343, 412, 446
DpnI	GATC	3 cut(s)	228, 258, 264
DpnII	GATC	3 cut(s)	226, 256, 262
Eam1104I	CTCTTC	1 cut(s)	468
EarI	CTCTTC	1 cut(s)	468
Ecl136II	GAGCTC	1 cut(s)	103
Eco147I	AGGCCT	2 cut(s)	95, 234
Eco24I	GRGCYC	1 cut(s)	105
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	107, 144
EcoICRI	GAGCTC	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	105
FaeI	CATG	2 cut(s)	301, 366
FaiI	YATR	5 cut(s)	165, 267, 269, 299, 364
FalI	AAGNNNNNCTT	2 cut(s)	80, 112
FatI	CATG	2 cut(s)	297, 362
FauNDI	CATATG	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	42
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	1 cut(s)	42
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	95, 234
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	2 cut(s)	301, 366
HindIII	AAGCTT	2 cut(s)	158, 409
HinfI	GANTC	3 cut(s)	16, 323, 359
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	359
Hpy188I	TCNGA	1 cut(s)	21
Hpy188III	TCNNGA	3 cut(s)	64, 254, 260
HpyAV	CCTTC	5 cut(s)	66, 70, 85, 217, 463
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	131
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
HpyF3I	CTNAG	5 cut(s)	18, 236, 343, 412, 446
Hsp92II	CATG	2 cut(s)	301, 366
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	3 cut(s)	226, 256, 262
LmnI	GCTCC	3 cut(s)	271, 403, 451
LpnPI	CCDG	4 cut(s)	62, 163, 304, 452
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	109, 432
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	3 cut(s)	228, 258, 264
MboI	GATC	3 cut(s)	226, 256, 262
MboII	GAAGA	5 cut(s)	25, 100, 296, 318, 485
MfeI	CAATTG	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	2 cut(s)	398, 420
MlyI	GAGTC	1 cut(s)	10
MnlI	CCTC	5 cut(s)	146, 245, 300, 441, 469
MroNI	GCCGGC	1 cut(s)	48
MspA1I	CMGCKG	1 cut(s)	240
MspI	CCGG	1 cut(s)	49
MunI	CAATTG	1 cut(s)	398
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	3 cut(s)	128, 451, 460
NaeI	GCCGGC	1 cut(s)	50
NdeI	CATATG	1 cut(s)	267
NdeII	GATC	3 cut(s)	226, 256, 262
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	2 cut(s)	301, 366
NmuCI	GTSAC	1 cut(s)	55
PceI	AGGCCT	2 cut(s)	95, 234
PctI	GAATGC	1 cut(s)	43
PdiI	GCCGGC	1 cut(s)	50
PfeI	GAWTC	2 cut(s)	323, 359
PkrI	GCNGC	1 cut(s)	43
PleI	GAGTC	1 cut(s)	10
PpsI	GAGTC	1 cut(s)	10
Psp124BI	GAGCTC	1 cut(s)	105
SacI	GAGCTC	1 cut(s)	105
SatI	GCNGC	1 cut(s)	42
Sau3AI	GATC	3 cut(s)	226, 256, 262
SchI	GAGTC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	2 cut(s)	109, 432
SfcI	CTRYAG	1 cut(s)	380
Sse9I	AATT	2 cut(s)	398, 420
SseBI	AGGCCT	2 cut(s)	95, 234
SsiI	CCGC	2 cut(s)	28, 240
SspMI	CTAG	1 cut(s)	183
SstI	GAGCTC	1 cut(s)	105
StuI	AGGCCT	2 cut(s)	95, 234
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	3 cut(s)	65, 173, 368
TasI	AATT	2 cut(s)	398, 420
TfiI	GAWTC	2 cut(s)	323, 359
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	38, 297, 482
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.