Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Reverse (-)

9862429 .. 9867768

Gene Structure 5340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G087500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTTAGGGGGAAGACTCAGATGAAGCGCATAGAGAATGCGGCGAGCAGACAAGTGACCTTCTCCAAGAGAAGGAATGGGCTGCTGAAGAAAGCCTTTGAGCTCTCAGTTCTATGTGATGCTGAAGTTGCACTTATTATTTTCTCCACAAGAGGGAAGCTCTATGAGTTTTCGAGCTCAAGTATCAGCAACACATTAGACCGTTATCAAAAGAGAGTGCAGGATCAAGGCCTCGGCAGTAAAGCAGTTCAAGTTGATATGGAGCATGGGAAGGATGACACTTGTAGCATGGCGAAGAAGATTGATTTTATTGAAGCTTCTAAACAGAAGCTCTTAGGTAATTGTTTGGAATCATGTTCAATAGAGGAACTGCAGCAGACAGAGAACCAATTGGAGCGAAGCTTAAGCAAAATTAGGGCTAGAAAGACTCAGTTATTGAGGGAGCAGATAGAGAAGCTGAAGGAAGAGGAGAAAAACCTATTTGAACAAAATGCTAAGCTACGGGAAAAGTGTGGCATGCAACCGCTTGGTCCTCCAAGCAAAATAAAAGATGGAGAGAATCGTGCAGTGTGCCAGCCCCAGACACCAGATATGGAGGATGTGGAGACTGAATTGGTGATTGGGCCACCTGAAAGACGAAGTGGCCAAAACCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

219

Amino Acids

24.76

Weight (kDa)

8.84

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 524
AclWI	GGATC	1 cut(s)	231
AcoI	YGGCCR	1 cut(s)	643
AcuI	CTGAAG	3 cut(s)	107, 144, 479
AfiI	CCNNNNNNNGG	2 cut(s)	72, 153
AflII	CTTAAG	1 cut(s)	403
AgsI	TTSAA	4 cut(s)	251, 314, 360, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
AluBI	AGCT	8 cut(s)	103, 160, 177, 317, 331, 402, 457, 499
AluI	AGCT	8 cut(s)	103, 160, 177, 317, 331, 402, 457, 499
Alw21I	GWGCWC	2 cut(s)	105, 179
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	231
AoxI	GGCC	3 cut(s)	229, 623, 643
ApeKI	GCWGC	2 cut(s)	82, 373
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	2 cut(s)	530, 623
AsuHPI	GGTGA	1 cut(s)	628
AvaII	GGWCC	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	645
BanII	GRGCYC	2 cut(s)	105, 179
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	2 cut(s)	105, 179
BbvI	GCAGC	2 cut(s)	69, 385
BccI	CCATC	1 cut(s)	545
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	371, 653
BfrI	CTTAAG	1 cut(s)	403
BisI	GCNGC	3 cut(s)	42, 83, 374
BlpI	GCTNAGC	1 cut(s)	495
BlsI	GCNGC	3 cut(s)	43, 84, 375
Bme18I	GGWCC	1 cut(s)	530
BmgT120I	GGNCC	2 cut(s)	530, 623
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	20
BplI	GAGNNNNNCTC	2 cut(s)	144, 176
Bpu1102I	GCTNAGC	1 cut(s)	495
BpuEI	CTTGAG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 153
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	2 cut(s)	280, 604
BseLI	CCNNNNNNNGG	2 cut(s)	72, 153
BseMII	CTCAG	3 cut(s)	32, 120, 443
BseRI	GAGGAG	1 cut(s)	482
BseXI	GCAGC	2 cut(s)	69, 385
BsgI	GTGCAG	2 cut(s)	239, 585
BshFI	GGCC	3 cut(s)	231, 625, 645
BsiHKAI	GWGCWC	2 cut(s)	105, 179
BslI	CCNNNNNNNGG	2 cut(s)	72, 153
BsmAI	GTCTC	1 cut(s)	599
BsmI	GAATGC	1 cut(s)	43
BsnI	GGCC	3 cut(s)	231, 625, 645
Bsp1286I	GDGCHC	2 cut(s)	105, 179
Bsp143I	GATC	1 cut(s)	223
Bsp1720I	GCTNAGC	1 cut(s)	495
BspACI	CCGC	2 cut(s)	41, 524
BspANI	GGCC	3 cut(s)	231, 625, 645
BspCNI	CTCAG	3 cut(s)	31, 119, 442
BspMAI	CTGCAG	1 cut(s)	375
BspPI	GGATC	1 cut(s)	231
BspTI	CTTAAG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	1 cut(s)	223
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	459
BstAFI	CTTAAG	1 cut(s)	403
BstC8I	GCNNGC	3 cut(s)	46, 518, 575
BstDEI	CTNAG	5 cut(s)	18, 106, 334, 429, 495
BstF5I	GGATG	2 cut(s)	280, 604
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	1 cut(s)	223
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNSI	RCATGY	1 cut(s)	520
BstSFI	CTRYAG	2 cut(s)	371, 653
BstV1I	GCAGC	2 cut(s)	69, 385
BstV2I	GAAGAC	1 cut(s)	20
BsuRI	GGCC	3 cut(s)	231, 625, 645
BtsCI	GGATG	2 cut(s)	280, 604
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	1 cut(s)	573
Cac8I	GCNNGC	3 cut(s)	46, 518, 575
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	2 cut(s)	530, 623
CviAII	CATG	4 cut(s)	266, 289, 354, 517
DdeI	CTNAG	5 cut(s)	18, 106, 334, 429, 495
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	643
Eam1104I	CTCTTC	1 cut(s)	459
EarI	CTCTTC	1 cut(s)	459
Ecl136II	GAGCTC	2 cut(s)	103, 177
Eco147I	AGGCCT	1 cut(s)	231
Eco24I	GRGCYC	2 cut(s)	105, 179
Eco47I	GGWCC	1 cut(s)	530
Eco53kI	GAGCTC	2 cut(s)	103, 177
Eco57I	CTGAAG	3 cut(s)	107, 144, 479
EcoICRI	GAGCTC	2 cut(s)	103, 177
EcoT38I	GRGCYC	2 cut(s)	105, 179
FaeI	CATG	4 cut(s)	269, 292, 357, 520
FalI	AAGNNNNNCTT	4 cut(s)	80, 112, 117, 149
FatI	CATG	4 cut(s)	265, 288, 353, 516
Fnu4HI	GCNGC	3 cut(s)	42, 83, 374
FokI	GGATG	2 cut(s)	287, 611
FriOI	GRGCYC	2 cut(s)	105, 179
Fsp4HI	GCNGC	3 cut(s)	42, 83, 374
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	3 cut(s)	42, 83, 374
HaeIII	GGCC	3 cut(s)	231, 625, 645
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	4 cut(s)	269, 292, 357, 520
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	2 cut(s)	315, 400
HinfI	GANTC	4 cut(s)	16, 350, 427, 559
HphI	GGTGA	1 cut(s)	628
Hpy188I	TCNGA	1 cut(s)	21
HpyAV	CCTTC	4 cut(s)	66, 70, 265, 454
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	5 cut(s)	131, 220, 373, 520, 566
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	5 cut(s)	18, 106, 334, 429, 495
Hsp92II	CATG	4 cut(s)	269, 292, 357, 520
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	3 cut(s)	262, 394, 442
LpnPI	CCDG	5 cut(s)	206, 587, 593, 600, 642
Lsp1109I	GCAGC	2 cut(s)	69, 385
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	1 cut(s)	55
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	5 cut(s)	25, 100, 307, 310, 476
MfeI	CAATTG	1 cut(s)	389
MhlI	GDGCHC	2 cut(s)	105, 179
MlsI	TGGCCA	1 cut(s)	645
MluCI	AATT	4 cut(s)	340, 389, 411, 611
MluNI	TGGCCA	1 cut(s)	645
MlyI	GAGTC	2 cut(s)	10, 421
MnlI	CCTC	7 cut(s)	146, 242, 358, 432, 460, 543, 589
Mox20I	TGGCCA	1 cut(s)	645
MscI	TGGCCA	1 cut(s)	645
MseI	TTAA	1 cut(s)	404
Msp20I	TGGCCA	1 cut(s)	645
MspCI	CTTAAG	1 cut(s)	403
MunI	CAATTG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	1 cut(s)	223
NlaIII	CATG	4 cut(s)	269, 292, 357, 520
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	55
NspI	RCATGY	1 cut(s)	520
PaeI	GCATGC	1 cut(s)	520
PceI	AGGCCT	1 cut(s)	231
PctI	GAATGC	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	350, 559
PkrI	GCNGC	3 cut(s)	43, 84, 375
PleI	GAGTC	2 cut(s)	10, 421
PpsI	GAGTC	2 cut(s)	10, 421
Psp124BI	GAGCTC	2 cut(s)	105, 179
PspPI	GGNCC	2 cut(s)	530, 623
PstI	CTGCAG	1 cut(s)	375
SacI	GAGCTC	2 cut(s)	105, 179
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	3 cut(s)	42, 83, 374
Sau3AI	GATC	1 cut(s)	223
Sau96I	GGNCC	2 cut(s)	530, 623
SchI	GAGTC	2 cut(s)	10, 421
SduI	GDGCHC	2 cut(s)	105, 179
SfaNI	GCATC	1 cut(s)	109
SfcI	CTRYAG	2 cut(s)	371, 653
SinI	GGWCC	1 cut(s)	530
SmlI	CTYRAG	2 cut(s)	178, 403
SmoI	CTYRAG	2 cut(s)	178, 403
SphI	GCATGC	1 cut(s)	520
Sse9I	AATT	4 cut(s)	340, 389, 411, 611
SseBI	AGGCCT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	41, 524
SspMI	CTAG	1 cut(s)	420
SstI	GAGCTC	2 cut(s)	105, 179
StuI	AGGCCT	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	173
TasI	AATT	4 cut(s)	340, 389, 411, 611
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	2 cut(s)	350, 559
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	573
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	2 cut(s)	82, 373
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	573
Vha464I	CTTAAG	1 cut(s)	403
VpaK11BI	GGWCC	1 cut(s)	530
XceI	RCATGY	1 cut(s)	520
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.