Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0006998

Physical Location & Seq

Genomic Coordinates Forward (+)

4023581 .. 4024546

Gene Structure 966 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0056500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAGTAGGAGATATGCAAGATTGTGTGTTGGCCGTGGCGCGTTTTGTTTTCCGGTCCATTCCCGGACTCTGGGATCAAAATCGAAACAGAAACCCGCCTCTAGAAGCATCAGACGTCGTTCCTCCTCCTCTTCCATCAAAACTGGCCATTTGAAAACAGATCAGTTTCTGAGTAATAGCAGTGATGACTTTGGTGCAGAAATCAGAGTCAAAAATGGGGATGAGATTGGGAACAAGATAATGGTAGTTGTGGATTCGAGCCTCGAAGCCAAAGGAGCTCTTGAATGGGCACTGTCCCACACTGTTCAAGCCCAAGACACCATTGTGCTTCTTCATGTAGCTCAGCCCTGCAAACAAGAATCAAATGCGAAGAAGCTTAATTTAAGAGCTTTTGAGCTTCTTCACTCTATGAAAAAAGACTGTCAGAGGAGAAGGCCTGGGGTGGAAGTTGAGGTAGCATTGCTTGAAGGGAAGGAAAGAGGTGCAATAATTGTGGAAGAAGCAAAGAAACAAAAGGTATCTCTACTTGTTCTTGGCCAAAAAAGAGAGAGGTCAATGTGGTGGAAGCTAATCAACAAGTGCTGGACGAGTAGGAGAAGAACATCCAGAAGCGGTGAGGTTGTGGAATACTGCATACAAAATGCTGGATGCATGACGATTGCGGTGAGGAGAAAGAGCAGAAGACTTGGAGGCTACTTGATCACCACCAAGCTTCACAAGAATTTCTGGCTTCTAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010015 GO:0010048 GO:0010073 GO:0010074 GO:0010075 GO:0010076 GO:0010082 GO:0010228 GO:0010468 GO:0010556 GO:0010817 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0040008 GO:0040034 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044464 GO:0048364 GO:0048506 GO:0048507 GO:0048509 GO:0048510 GO:0048608 GO:0048638 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0098727 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:2000012 GO:2000026 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04013 ko04022 ko04371 ko05418 map04013 map04022 map04371 map05418

Pfam Domains

Protein Families

K-box SRF-TF

Protein Analysis

246

Amino Acids

27.87

Weight (kDa)

10.34

Isoelectric Point (pI)

56.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Usp	PF00582	79 - 223	9.5e-16	Universal stress protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006998)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11880 AT4G11880 AT4G11880 AT4G11880 AT4G22950 AT4G22950 AT4G22950
fragaria_vesca	FvH4_5g01240 FvH4_5g01240 FvH4_5g01240
malus_domestica	MD04G1070200.v1.1
prunus_persica	Prupe.5G087500_v2.0.a1 Prupe.5G087500_v2.0.a1
pyrus_communis	pycom04g06360
rosa_chinensis	RchiOBHm_Chr7g0199781
rosa_laevigata	RLG00000003769
rosa_multiflora	Rmu_sc0002748.1_g000019
rosa_roxburghii	Rroxscaffold_3G00256440
rosa_rugosa	Rorug07G0056400 Rorug07G0056500
rosa_samantha	Rh7AG181700 Rh7BG184500 Rh7CG191300 Rh7DG184500
rosa_wichuraiana	Rw7G015930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	118
AccII	CGCG	1 cut(s)	41
AciI	CCGC	3 cut(s)	96, 612, 662
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	3 cut(s)	31, 145, 535
AcsI	RAATTY	1 cut(s)	721
AcyI	GRCGYC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	70
AgsI	TTSAA	4 cut(s)	154, 284, 308, 467
AjnI	CCWGG	1 cut(s)	436
AleI	CACNNNNGTG	1 cut(s)	323
AluBI	AGCT	8 cut(s)	278, 341, 376, 389, 397, 568, 712, 737
AluI	AGCT	8 cut(s)	278, 341, 376, 389, 397, 568, 712, 737
Alw21I	GWGCWC	1 cut(s)	280
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	169
AoxI	GGCC	4 cut(s)	31, 145, 434, 535
ApoI	RAATTY	1 cut(s)	721
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	3 cut(s)	626, 676, 694
AvaII	GGWCC	1 cut(s)	55
BaeGI	GKGCMC	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	147, 537
BanII	GRGCYC	1 cut(s)	280
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	280
BccI	CCATC	1 cut(s)	143
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	438
BclI	TGATCA	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	64
BfaI	CTAG	2 cut(s)	102, 734
BlpI	GCTNAGC	1 cut(s)	342
Bme1390I	CCNGG	2 cut(s)	64, 438
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	64, 438
BmsI	GCATC	2 cut(s)	117, 638
BpiI	GAAGAC	1 cut(s)	688
Bpu1102I	GCTNAGC	1 cut(s)	342
BpuMI	CCSGG	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	34, 437
BsaWI	WCCGGW	1 cut(s)	52
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	458
Bse8I	GATNNNNATC	1 cut(s)	79
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	34, 437
BseGI	GGATG	3 cut(s)	226, 602, 653
BseJI	GATNNNNATC	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	70
BseMI	GCAATG	1 cut(s)	458
BseMII	CTCAG	2 cut(s)	161, 356
BseNI	ACTGG	1 cut(s)	148
BseRI	GAGGAG	4 cut(s)	115, 118, 442, 682
BseSI	GKGCMC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	33, 147, 436, 537
BsiHKAI	GWGCWC	1 cut(s)	280
BsiSI	CCGG	2 cut(s)	53, 64
BslFI	GGGAC	1 cut(s)	280
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	280
BsnI	GGCC	4 cut(s)	33, 147, 436, 537
Bsp1286I	GDGCHC	2 cut(s)	280, 292
Bsp143I	GATC	3 cut(s)	74, 160, 699
Bsp1720I	GCTNAGC	1 cut(s)	342
BspACI	CCGC	3 cut(s)	96, 612, 662
BspANI	GGCC	4 cut(s)	33, 147, 436, 537
BspCNI	CTCAG	2 cut(s)	162, 355
BspFNI	CGCG	1 cut(s)	41
BspPI	GGATC	1 cut(s)	82
BsrDI	GCAATG	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	2 cut(s)	34, 437
BssMI	GATC	3 cut(s)	74, 160, 699
BssNI	GRCGYC	1 cut(s)	115
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	294, 304, 422
Bst6I	CTCTTC	1 cut(s)	136
BstACI	GRCGYC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	170, 342
BstDSI	CCRYGG	1 cut(s)	34
BstF5I	GGATG	3 cut(s)	226, 602, 653
BstFNI	CGCG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	3 cut(s)	77, 163, 702
BstMBI	GATC	3 cut(s)	74, 160, 699
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	2 cut(s)	62, 436
BstSLI	GKGCMC	1 cut(s)	292
BstUI	CGCG	1 cut(s)	41
BstV2I	GAAGAC	1 cut(s)	688
BsuRI	GGCC	4 cut(s)	33, 147, 436, 537
BtgI	CCRYGG	1 cut(s)	34
BtsCI	GGATG	3 cut(s)	226, 602, 653
BtsI	GCAGTG	1 cut(s)	187
BtsIMutI	CAGTG	3 cut(s)	187, 290, 300
CaiI	CAGNNNCTG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	474, 509
CviAII	CATG	2 cut(s)	335, 652
DdeI	CTNAG	2 cut(s)	170, 342
DpnI	GATC	3 cut(s)	76, 162, 701
DpnII	GATC	3 cut(s)	74, 160, 699
EaeI	YGGCCR	3 cut(s)	31, 145, 535
Eam1104I	CTCTTC	1 cut(s)	136
EarI	CTCTTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	653
EcoT38I	GRGCYC	1 cut(s)	280
FaeI	CATG	2 cut(s)	338, 655
FaiI	YATR	5 cut(s)	15, 336, 410, 635, 653
FalI	AAGNNNNNCTT	2 cut(s)	264, 296
FaqI	GGGAC	1 cut(s)	280
FatI	CATG	2 cut(s)	334, 651
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	699
FokI	GGATG	3 cut(s)	233, 589, 660
FriOI	GRGCYC	1 cut(s)	280
FspBI	CTAG	2 cut(s)	102, 734
GlaI	GCGC	1 cut(s)	40
HaeIII	GGCC	4 cut(s)	33, 147, 436, 537
HapII	CCGG	2 cut(s)	53, 64
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	115
Hin1II	CATG	2 cut(s)	338, 655
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HindIII	AAGCTT	2 cut(s)	374, 710
HinfI	GANTC	4 cut(s)	67, 207, 254, 359
HpaII	CCGG	2 cut(s)	53, 64
HphI	GGTGA	3 cut(s)	626, 676, 694
Hpy188I	TCNGA	4 cut(s)	113, 171, 206, 426
Hpy188III	TCNNGA	3 cut(s)	102, 281, 606
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	3 cut(s)	426, 461, 466
HpyCH4III	ACNGT	3 cut(s)	294, 304, 422
HpyCH4IV	ACGT	1 cut(s)	115
HpyCH4V	TGCA	6 cut(s)	17, 197, 351, 485, 633, 651
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	170, 342
HpySE526I	ACGT	1 cut(s)	115
Hsp92I	GRCGYC	1 cut(s)	115
Hsp92II	CATG	2 cut(s)	338, 655
HspAI	GCGC	1 cut(s)	39
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	3 cut(s)	74, 160, 699
LmnI	GCTCC	1 cut(s)	275
LweI	GCATC	2 cut(s)	117, 638
MaeI	CTAG	2 cut(s)	102, 734
MaeII	ACGT	1 cut(s)	115
MalI	GATC	3 cut(s)	76, 162, 701
MboI	GATC	3 cut(s)	74, 160, 699
MboII	GAAGA	7 cut(s)	123, 323, 382, 392, 509, 609, 693
MhlI	GDGCHC	2 cut(s)	280, 292
MlsI	TGGCCA	2 cut(s)	147, 537
MluCI	AATT	3 cut(s)	379, 489, 721
MluNI	TGGCCA	2 cut(s)	147, 537
MlyI	GAGTC	2 cut(s)	61, 216
Mox20I	TGGCCA	2 cut(s)	147, 537
Mph1103I	ATGCAT	1 cut(s)	653
MscI	TGGCCA	2 cut(s)	147, 537
MseI	TTAA	3 cut(s)	378, 383, 739
MslI	CAYNNNNRTG	1 cut(s)	323
Msp20I	TGGCCA	2 cut(s)	147, 537
MspI	CCGG	2 cut(s)	53, 64
MspR9I	CCNGG	2 cut(s)	64, 438
MvaI	CCWGG	1 cut(s)	438
MvnI	CGCG	1 cut(s)	41
MwoI	GCNNNNNNNGC	1 cut(s)	275
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	74, 160, 699
NlaIII	CATG	2 cut(s)	338, 655
NsiI	ATGCAT	1 cut(s)	653
OliI	CACNNNNGTG	1 cut(s)	323
PceI	AGGCCT	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	254, 359
PfoI	TCCNGGA	1 cut(s)	62
PleI	GAGTC	2 cut(s)	61, 215
PpsI	GAGTC	2 cut(s)	61, 215
Psp124BI	GAGCTC	1 cut(s)	280
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	55
PstNI	CAGNNNCTG	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	280
SaqAI	TTAA	3 cut(s)	378, 383, 739
Sau3AI	GATC	3 cut(s)	74, 160, 699
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	61, 216
ScrFI	CCNGG	2 cut(s)	64, 438
SduI	GDGCHC	2 cut(s)	280, 292
SfaNI	GCATC	2 cut(s)	117, 638
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	323
Sse9I	AATT	3 cut(s)	379, 489, 721
SseBI	AGGCCT	1 cut(s)	436
SsiI	CCGC	3 cut(s)	96, 612, 662
SspMI	CTAG	2 cut(s)	102, 734
SstI	GAGCTC	1 cut(s)	280
StuI	AGGCCT	1 cut(s)	436
StyD4I	CCNGG	2 cut(s)	62, 436
TaaI	ACNGT	3 cut(s)	294, 304, 422
TaiI	ACGT	1 cut(s)	118
TaqI	TCGA	3 cut(s)	83, 257, 264
TasI	AATT	3 cut(s)	379, 489, 721
TfiI	GAWTC	2 cut(s)	254, 359
Tru1I	TTAA	3 cut(s)	378, 383, 739
Tru9I	TTAA	3 cut(s)	378, 383, 739
TscAI	CASTG	3 cut(s)	187, 297, 307
TspDTI	ATGAA	2 cut(s)	323, 425
TspRI	CASTG	3 cut(s)	187, 297, 307
VpaK11BI	GGWCC	1 cut(s)	55
XapI	RAATTY	1 cut(s)	721
XbaI	TCTAGA	1 cut(s)	101
XspI	CTAG	2 cut(s)	102, 734
ZraI	GACGTC	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.