AT4G11970

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0002140
Physical Location & Seq
Forward (+)
7180350 .. 7183677
3328 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G11970.4

Sequence Viewer

Length: 1335 bp
ATGTCTTCTGATACTGCTAAGGAAAATGCTTCTGTTGTCGATTCGTCTTTGACTGATTGGAAACAAGATTTAGGAAACTCTGATGATCCAGAGAGTACAAGTTACAGAAGCAAGGAAGACCATAAACTGTCAAAGGTGGATGTTGATCGACGTAACTTTCCTGATCAACTTGAAAGTGCAAAGGCGAATAAGAATAGTAAACCAGGGTATCGAACGAGATATTTCATCATCAAAAGTCTGAATTATGATAATATTCAAGTTTCAGTTGAGAAAGGGATTTGGGCTACTCAAGTAATGAATGAGCCAATATTGGAAGGCGCTTTTCATAAATCTGGTCGAGTGATTTTAATCTTCAGCGTGAACATGAGCGGATTCTTCCAAGGGTATGCAGAGATGTTGTCTCCTGTGGGTTGGAGGCGAGACCAGATATGGAGTCAGGGAGGTGGTAAAAACAATCCCTGGGGACGTAGTTTTAAAGTAAAATGGTTGCGGTTGAGTGAATTGCCTTTTCAGAAAACACTTCATCTCAAGAATCCTTTGAATGATTACAAGCCTGTCAAGATTAGCCGAGATTGCCAGGAATTACCTGAAGATATCGGTGAAGCACTTTGTGAACTCCTTGATGCAAATAGCTGCGATGACGGGTTGCTGAATAGCTCTTCTAGGGATGATTATTCAACAAAAAGGTCCCGCGCAGAACCTCCATCTTCTTCAGGAGACGATGAGTATAATAACAATCTTTGGGGCCATACACCAATGTCTTACCCTCCTACGGTCTACCCAAACCAGGATGACCTCAGCAGATTTCATCTTGCACAGCAGAGAGGATATGGAGTTTCCCCCGAATATCTGCATACATCACCAGGTGCATCTAACTCTCGCACGGAGCAAGACAAGTCTTTACGATTCAACTCATGGTGTTTGCCTTTGGAAAGCCCTCTCGCGAATTCTCTAACCGATGATGATTTTCTTGAAATGGTAGTGGCATATCTGCTTGTAACTTATGCTGAGAATTTCATCCCATTACGACCTCTTGTTCTCGAATTAGATATTTTTTGTAAGTCATGTTGTTTAGTTGAATCAAGAATAGTCATGACACACTACTGGAAACTTGGTGAAAACATTTGTAGTATTTTTCAAACTCTGAGCTATTTCAGTGTGCTCTTTCTGATCCATAACACTTACATATCTCAGTGTCTGGCTGAGTTTTGCATTGATGTTACAGGGACTTCTTTCTGTTTCTTGAGAAGCATCATGAGATCAGGTTATGTTGTTGTTGTATGTTTGACAAAGTCTTGTGATTGTGTTTTTTTGTTGTTTTTTGCAGTCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

444

Amino Acids

50.49

Weight (kDa)

5.41

Isoelectric Point (pI)

48.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 72 - 207 1.4e-47 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 369
AccI GTMKAC 1 cut(s) 777
AccII CGCG 2 cut(s) 693, 944
AciI CCGC 3 cut(s) 369, 490, 691
AclWI GGATC 2 cut(s) 80, 1165
AcsI RAATTY 2 cut(s) 946, 1012
AcuI CTGAAG 3 cut(s) 337, 609, 696
AdeI CACNNNGTG 2 cut(s) 611, 866
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 2 cut(s) 772, 787
AgsI TTSAA 8 cut(s) 173, 257, 541, 678, 910, 974, 1079, 1139
AjnI CCWGG 5 cut(s) 202, 458, 576, 786, 862
AluBI AGCT 3 cut(s) 633, 657, 1149
AluI AGCT 3 cut(s) 633, 657, 1149
Alw21I GWGCWC 1 cut(s) 1164
Alw26I GTCTC 3 cut(s) 405, 414, 711
AlwI GGATC 2 cut(s) 80, 1165
AlwNI CAGNNNCTG 1 cut(s) 1198
AoxI GGCC 1 cut(s) 745
ApeKI GCWGC 1 cut(s) 633
ApoI RAATTY 2 cut(s) 946, 1012
AspLEI GCGC 2 cut(s) 320, 695
AspS9I GGNCC 2 cut(s) 687, 745
AsuHPI GGTGA 3 cut(s) 611, 852, 1127
AvaII GGWCC 1 cut(s) 687
BaeI ACNNNNGTAYC 2 cut(s) 191, 224
BbsI GAAGAC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 1164
BbvCI CCTCAGC 1 cut(s) 797
BbvI GCAGC 1 cut(s) 620
BccI CCATC 1 cut(s) 712
BciT130I CCWGG 5 cut(s) 204, 460, 578, 788, 864
BclI TGATCA 1 cut(s) 163
BcoDI GTCTC 3 cut(s) 405, 414, 711
BfaI CTAG 1 cut(s) 663
BfoI RGCGCY 1 cut(s) 321
BisI GCNGC 1 cut(s) 634
BlsI GCNGC 1 cut(s) 635
Bme1390I CCNGG 5 cut(s) 204, 460, 578, 788, 864
Bme18I GGWCC 1 cut(s) 687
BmgT120I GGNCC 2 cut(s) 687, 745
BmiI GGNNCC 2 cut(s) 689, 746
BmrFI CCNGG 5 cut(s) 204, 460, 578, 788, 864
BmsI GCATC 3 cut(s) 613, 878, 1260
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 2 cut(s) 18, 797
BpuEI CTTGAG 3 cut(s) 273, 512, 1264
BsaBI GATNNNNATC 2 cut(s) 144, 347
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 203, 379, 458, 459
Bsc4I CCNNNNNNNGG 2 cut(s) 772, 787
Bse1I ACTGG 1 cut(s) 1109
Bse8I GATNNNNATC 2 cut(s) 144, 347
BseBI CCWGG 5 cut(s) 204, 460, 578, 788, 864
BseDI CCNNGG 4 cut(s) 203, 379, 458, 459
BseGI GGATG 4 cut(s) 145, 673, 796, 1017
BseJI GATNNNNATC 2 cut(s) 144, 347
BseLI CCNNNNNNNGG 2 cut(s) 772, 787
BseMII CTCAG 5 cut(s) 811, 999, 1136, 1194, 1205
BseNI ACTGG 1 cut(s) 1109
BseXI GCAGC 1 cut(s) 620
Bsh1236I CGCG 2 cut(s) 693, 944
BshFI GGCC 1 cut(s) 747
BsiHKAI GWGCWC 1 cut(s) 1164
BslFI GGGAC 3 cut(s) 477, 673, 1240
BslI CCNNNNNNNGG 2 cut(s) 772, 787
BsmAI GTCTC 3 cut(s) 405, 414, 711
BsmBI CGTCTC 1 cut(s) 711
BsmFI GGGAC 3 cut(s) 477, 673, 1240
BsnI GGCC 1 cut(s) 747
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 1164
Bsp143I GATC 5 cut(s) 85, 145, 163, 1170, 1259
Bsp68I TCGCGA 1 cut(s) 944
BspACI CCGC 3 cut(s) 369, 490, 691
BspANI GGCC 1 cut(s) 747
BspCNI CTCAG 5 cut(s) 810, 1000, 1137, 1195, 1204
BspFNI CGCG 2 cut(s) 693, 944
BspHI TCATGA 2 cut(s) 1092, 1254
BspLI GGNNCC 2 cut(s) 689, 746
BspPI GGATC 2 cut(s) 80, 1165
BspQI GCTCTTC 1 cut(s) 664
BspTNI GGTCTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 369
BsrI ACTGG 1 cut(s) 1109
BssECI CCNNGG 4 cut(s) 203, 379, 458, 459
BssMI GATC 5 cut(s) 85, 145, 163, 1170, 1259
BssT1I CCWWGG 1 cut(s) 379
Bst2UI CCWGG 5 cut(s) 204, 460, 578, 788, 864
Bst4CI ACNGT 2 cut(s) 129, 775
Bst6I CTCTTC 1 cut(s) 664
BstDEI CTNAG 6 cut(s) 18, 797, 1008, 1145, 1191, 1203
BstF5I GGATG 4 cut(s) 145, 673, 796, 1017
BstFNI CGCG 2 cut(s) 693, 944
BstH2I RGCGCY 1 cut(s) 321
BstHHI GCGC 2 cut(s) 320, 695
BstKTI GATC 5 cut(s) 88, 148, 166, 1173, 1262
BstMAI GTCTC 3 cut(s) 405, 414, 711
BstMBI GATC 5 cut(s) 85, 145, 163, 1170, 1259
BstMWI GCNNNNNNNGC 1 cut(s) 573
BstNI CCWGG 5 cut(s) 204, 460, 578, 788, 864
BstSCI CCNGG 5 cut(s) 202, 458, 576, 786, 862
BstUI CGCG 2 cut(s) 693, 944
BstV1I GCAGC 1 cut(s) 620
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 747
BtgZI GCGATG 1 cut(s) 651
BtsCI GGATG 4 cut(s) 145, 673, 796, 1017
BtsIMutI CAGTG 2 cut(s) 1162, 1199
BtuMI TCGCGA 1 cut(s) 944
CaiI CAGNNNCTG 1 cut(s) 1198
CciI TCATGA 2 cut(s) 1092, 1254
CfoI GCGC 2 cut(s) 320, 695
Cfr13I GGNCC 2 cut(s) 687, 745
CsiI ACCWGGT 1 cut(s) 862
Csp6I GTAC 1 cut(s) 96
CviAII CATG 5 cut(s) 364, 915, 1065, 1093, 1255
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 6 cut(s) 18, 797, 1008, 1145, 1191, 1203
DpnI GATC 5 cut(s) 87, 147, 165, 1172, 1261
DpnII GATC 5 cut(s) 85, 145, 163, 1170, 1259
DraI TTTAAA 1 cut(s) 475
DraIII CACNNNGTG 2 cut(s) 611, 866
Eam1104I CTCTTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 664
Eco130I CCWWGG 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 414
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 687
Eco57I CTGAAG 3 cut(s) 337, 609, 696
EcoO109I RGGNCCY 1 cut(s) 687
EcoRI GAATTC 1 cut(s) 946
EcoRII CCWGG 5 cut(s) 202, 458, 576, 786, 862
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 379
ErhI CCWWGG 1 cut(s) 379
Esp3I CGTCTC 1 cut(s) 711
FaeI CATG 5 cut(s) 367, 918, 1068, 1096, 1258
FaqI GGGAC 3 cut(s) 477, 673, 1240
FatI CATG 5 cut(s) 363, 914, 1064, 1092, 1254
FauI CCCGC 1 cut(s) 698
FbaI TGATCA 1 cut(s) 163
FblI GTMKAC 1 cut(s) 777
Fnu4HI GCNGC 1 cut(s) 634
FokI GGATG 4 cut(s) 152, 680, 803, 1004
Fsp4HI GCNGC 1 cut(s) 634
FspBI CTAG 1 cut(s) 663
GlaI GCGC 2 cut(s) 319, 694
GluI GCNGC 1 cut(s) 634
HaeII RGCGCY 1 cut(s) 321
HaeIII GGCC 1 cut(s) 747
HhaI GCGC 2 cut(s) 320, 695
Hin1II CATG 5 cut(s) 367, 918, 1068, 1096, 1258
Hin6I GCGC 2 cut(s) 318, 693
HinP1I GCGC 2 cut(s) 318, 693
HinfI GANTC 6 cut(s) 41, 372, 433, 532, 906, 1079
HphI GGTGA 3 cut(s) 611, 852, 1127
Hpy166II GTNNAC 4 cut(s) 200, 361, 614, 778
Hpy188I TCNGA 6 cut(s) 10, 82, 240, 513, 1146, 1170
Hpy8I GTNNAC 4 cut(s) 200, 361, 614, 778
Hpy99I CGWCG 1 cut(s) 153
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 2 cut(s) 129, 775
HpyCH4IV ACGT 2 cut(s) 151, 466
HpyCH4V TGCA 8 cut(s) 179, 389, 626, 815, 853, 869, 1212, 1325
HpyF10VI GCNNNNNNNGC 1 cut(s) 573
HpyF3I CTNAG 6 cut(s) 18, 797, 1008, 1145, 1191, 1203
HpySE526I ACGT 2 cut(s) 151, 466
Hsp92II CATG 5 cut(s) 367, 918, 1068, 1096, 1258
HspAI GCGC 2 cut(s) 318, 693
Ksp22I TGATCA 1 cut(s) 163
Kzo9I GATC 5 cut(s) 85, 145, 163, 1170, 1259
LguI GCTCTTC 1 cut(s) 664
LmnI GCTCC 1 cut(s) 886
Lsp1109I GCAGC 1 cut(s) 620
LweI GCATC 3 cut(s) 613, 878, 1260
MabI ACCWGGT 1 cut(s) 862
MaeI CTAG 1 cut(s) 663
MaeII ACGT 2 cut(s) 151, 466
MaeIII GTNAC 4 cut(s) 101, 152, 997, 1219
MalI GATC 5 cut(s) 87, 147, 165, 1172, 1261
MbiI CCGCTC 1 cut(s) 369
MboI GATC 5 cut(s) 85, 145, 163, 1170, 1259
MboII GAAGA 7 cut(s) 128, 343, 367, 602, 651, 699, 702
MhlI GDGCHC 1 cut(s) 1164
MluCI AATT 6 cut(s) 241, 500, 581, 946, 1012, 1043
MlyI GAGTC 1 cut(s) 442
MmeI TCCRAC 1 cut(s) 392
MnlI CCTC 8 cut(s) 408, 434, 711, 777, 806, 818, 948, 1041
MseI TTAA 2 cut(s) 347, 474
MspR9I CCNGG 5 cut(s) 204, 460, 578, 788, 864
MvaI CCWGG 5 cut(s) 204, 460, 578, 788, 864
MvnI CGCG 2 cut(s) 693, 944
MwoI GCNNNNNNNGC 1 cut(s) 573
NdeII GATC 5 cut(s) 85, 145, 163, 1170, 1259
NlaIII CATG 5 cut(s) 367, 918, 1068, 1096, 1258
NlaIV GGNNCC 2 cut(s) 689, 746
NmeAIII GCCGAG 1 cut(s) 593
NruI TCGCGA 1 cut(s) 944
PagI TCATGA 2 cut(s) 1092, 1254
PasI CCCWGGG 1 cut(s) 459
PciSI GCTCTTC 1 cut(s) 664
PfeI GAWTC 5 cut(s) 41, 372, 532, 906, 1079
PflFI GACNNNGTC 1 cut(s) 1291
PkrI GCNGC 1 cut(s) 635
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
PpuMI RGGWCCY 1 cut(s) 687
Psp5II RGGWCCY 1 cut(s) 687
Psp6I CCWGG 5 cut(s) 202, 458, 576, 786, 862
PspGI CCWGG 5 cut(s) 202, 458, 576, 786, 862
PspN4I GGNNCC 2 cut(s) 689, 746
PspPI GGNCC 2 cut(s) 687, 745
PspPPI RGGWCCY 1 cut(s) 687
PstNI CAGNNNCTG 1 cut(s) 1198
PsyI GACNNNGTC 1 cut(s) 1291
RruI TCGCGA 1 cut(s) 944
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 664
SaqAI TTAA 2 cut(s) 347, 474
SatI GCNGC 1 cut(s) 634
Sau3AI GATC 5 cut(s) 85, 145, 163, 1170, 1259
Sau96I GGNCC 2 cut(s) 687, 745
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 5 cut(s) 204, 460, 578, 788, 864
SduI GDGCHC 1 cut(s) 1164
SexAI ACCWGGT 1 cut(s) 862
SfaNI GCATC 3 cut(s) 613, 878, 1260
SinI GGWCC 1 cut(s) 687
SmlI CTYRAG 3 cut(s) 288, 527, 1243
SmoI CTYRAG 3 cut(s) 288, 527, 1243
Sse9I AATT 6 cut(s) 241, 500, 581, 946, 1012, 1043
SsiI CCGC 3 cut(s) 369, 490, 691
SspI AATATT 2 cut(s) 253, 309
SspMI CTAG 1 cut(s) 663
StyD4I CCNGG 5 cut(s) 202, 458, 576, 786, 862
StyI CCWWGG 1 cut(s) 379
TaaI ACNGT 2 cut(s) 129, 775
TaiI ACGT 2 cut(s) 154, 469
TaqI TCGA 5 cut(s) 39, 148, 211, 337, 1041
TasI AATT 6 cut(s) 241, 500, 581, 946, 1012, 1043
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 5 cut(s) 41, 372, 532, 906, 1079
Tru1I TTAA 2 cut(s) 347, 474
Tru9I TTAA 2 cut(s) 347, 474
TscAI CASTG 2 cut(s) 1162, 1199
TseI GCWGC 1 cut(s) 633
TspDTI ATGAA 6 cut(s) 214, 311, 314, 512, 797, 1006
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 2 cut(s) 1162, 1199
Tth111I GACNNNGTC 1 cut(s) 1291
VpaK11BI GGWCC 1 cut(s) 687
XapI RAATTY 2 cut(s) 946, 1012
XmiI GTMKAC 1 cut(s) 777
XspI CTAG 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.