Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0002140

Physical Location & Seq

Genomic Coordinates Reverse (-)

10828889 .. 10831467

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g06770.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGTTGTGTTGCAGAACTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTGCCTTCCAAGGGTATGCTCAAATGATGTCTTCTGTTGGATGGAGACGAGACAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCATGGGGCCGCAGTTTTAAGGTCGAATGGCTGCGGCTAAATGATCTTCCTTTCCAAAAGACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCCGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTTTGTGAGCTTCTTGATGGGACGGATGATGTGCACGGCTTACCGAACGGTATTCCCATGGATGATTTTCCTTCAAAAAGGCCTTGTATAGAGCCTCCATGTTCATTAGGGGAGGAAGAGTATAATGTGGGTCCCATGCATCTATTGTGGTCCCAGACACCCATGATGTATCCTTCGTTTCTTTACCAGCAGCAGGCTGAAGCAAATAGATATCATGTAGCAAATCAGAGATCTACTGAAAGTCGTCTAGCTAGCGCTCTTCTGACTGAAGATGATTTTTTGGAAATGTCTTATGAAGAATACCTGGAGGCCCAAAGCAGAAGTAGCAAGGAAGTATGTCTGCCTGGTTCTAGATCAGAGGAATCATCAAGAAGTAGAATGCAGGAACATGATTCAAACTCAAGCTATGGAAGCGACCGCAGCTGCTCAAGGAAAAGGCCTCATCATTCATCCCACAGGCAATCACAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

256

Amino Acids

29.15

Weight (kDa)

5.78

Isoelectric Point (pI)

73.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970
fragaria_vesca	FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140
malus_domestica	MD06G1069100.v1.1
prunus_persica	Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1
pyrus_communis	pycom06g06770
rosa_chinensis	RchiOBHm_Chr7g0199981 RchiOBHm_Chr7g0200101
rosa_laevigata	RLG00000003755
rosa_multiflora	Rmu_sc0006685.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256310
rosa_rugosa	Rorug07G0057600
rosa_samantha	Rh7AG182800 Rh7BG186000 Rh7CG192600 Rh7DG185800 Rh7DG187000
rosa_wichuraiana	Rw7G016030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	59
AccB7I	CCANNNNNTGG	1 cut(s)	284
AciI	CCGC	3 cut(s)	154, 178, 712
AcuI	CTGAAG	2 cut(s)	513, 582
AfaI	GTAC	1 cut(s)	236
AfeI	AGCGCT	1 cut(s)	550
AfiI	CCNNNNNNNGG	3 cut(s)	69, 284, 487
AgsI	TTSAA	3 cut(s)	229, 369, 690
AjnI	CCWGG	3 cut(s)	264, 597, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	192, 224
AluBI	AGCT	5 cut(s)	293, 304, 545, 699, 717
AluI	AGCT	5 cut(s)	293, 304, 545, 699, 717
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	4 cut(s)	97, 102, 252, 279
Alw44I	GTGCAC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	261
Aor51HI	AGCGCT	1 cut(s)	550
AoxI	GGCC	4 cut(s)	151, 374, 603, 731
ApaLI	GTGCAC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	175, 484, 714, 717
AspLEI	GCGC	1 cut(s)	551
AspS9I	GGNCC	4 cut(s)	151, 425, 444, 604
AsuNHI	GCTAGC	1 cut(s)	545
AvaII	GGWCC	2 cut(s)	425, 444
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	81
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	4 cut(s)	162, 496, 704, 726
BccI	CCATC	2 cut(s)	93, 305
BceAI	ACGGC	1 cut(s)	346
BciT130I	CCWGG	3 cut(s)	266, 599, 639
BciVI	GTATCC	1 cut(s)	474
BcoDI	GTCTC	4 cut(s)	97, 102, 252, 279
BfaI	CTAG	3 cut(s)	542, 546, 645
BfoI	RGCGCY	1 cut(s)	552
BfuI	GTATCC	1 cut(s)	474
BglII	AGATCT	1 cut(s)	524
BisI	GCNGC	6 cut(s)	154, 176, 179, 485, 715, 718
BlsI	GCNGC	6 cut(s)	155, 177, 180, 486, 716, 719
Bme1390I	CCNGG	3 cut(s)	266, 599, 639
Bme18I	GGWCC	2 cut(s)	425, 444
BmgT120I	GGNCC	4 cut(s)	151, 425, 444, 604
BmiI	GGNNCC	5 cut(s)	61, 152, 426, 427, 446
BmrFI	CCNGG	3 cut(s)	266, 599, 639
BmsI	GCATC	1 cut(s)	442
BmtI	GCTAGC	1 cut(s)	549
BpiI	GAAGAC	1 cut(s)	81
BpmI	CTGGAG	2 cut(s)	261, 620
BpuEI	CTTGAG	3 cut(s)	200, 679, 706
BsaJI	CCNNGG	3 cut(s)	67, 146, 351
BsaXI	ACNNNNNCTCC	2 cut(s)	398, 428
Bsc4I	CCNNNNNNNGG	3 cut(s)	69, 284, 487
BseBI	CCWGG	3 cut(s)	266, 599, 639
BseDI	CCNNGG	3 cut(s)	67, 146, 351
BseGI	GGATG	4 cut(s)	104, 325, 361, 743
BseLI	CCNNNNNNNGG	3 cut(s)	69, 284, 487
BseSI	GKGCMC	1 cut(s)	330
BseXI	GCAGC	4 cut(s)	162, 496, 704, 726
Bsh1285I	CGRYCG	1 cut(s)	712
BshFI	GGCC	4 cut(s)	153, 376, 605, 733
BshNI	GGYRCC	1 cut(s)	59
BsiEI	CGRYCG	1 cut(s)	712
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	3 cut(s)	328, 411, 430
BslI	CCNNNNNNNGG	3 cut(s)	69, 284, 487
BsmAI	GTCTC	4 cut(s)	97, 102, 252, 279
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	3 cut(s)	328, 411, 430
BsmI	GAATGC	1 cut(s)	678
BsnI	GGCC	4 cut(s)	153, 376, 605, 733
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	187, 524, 647
Bsp19I	CCATGG	2 cut(s)	146, 351
BspACI	CCGC	3 cut(s)	154, 178, 712
BspANI	GGCC	4 cut(s)	153, 376, 605, 733
BspLI	GGNNCC	5 cut(s)	61, 152, 426, 427, 446
BspOI	GCTAGC	1 cut(s)	549
BspQI	GCTCTTC	1 cut(s)	558
BspT107I	GGYRCC	1 cut(s)	59
BssECI	CCNNGG	3 cut(s)	67, 146, 351
BssMI	GATC	3 cut(s)	187, 524, 647
BssT1I	CCWWGG	3 cut(s)	67, 146, 351
Bst2UI	CCWGG	3 cut(s)	266, 599, 639
Bst4CI	ACNGT	1 cut(s)	344
Bst6I	CTCTTC	3 cut(s)	213, 405, 558
BstAPI	GCANNNNNTGC	1 cut(s)	261
BstC8I	GCNNGC	2 cut(s)	489, 547
BstDSI	CCRYGG	2 cut(s)	146, 351
BstF5I	GGATG	4 cut(s)	104, 325, 361, 743
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	1 cut(s)	551
BstKTI	GATC	3 cut(s)	190, 527, 650
BstMAI	GTCTC	4 cut(s)	97, 102, 252, 279
BstMBI	GATC	3 cut(s)	187, 524, 647
BstMCI	CGRYCG	1 cut(s)	712
BstMWI	GCNNNNNNNGC	4 cut(s)	261, 618, 705, 714
BstNI	CCWGG	3 cut(s)	266, 599, 639
BstSCI	CCNGG	3 cut(s)	264, 597, 637
BstSLI	GKGCMC	1 cut(s)	330
BstV1I	GCAGC	4 cut(s)	162, 496, 704, 726
BstV2I	GAAGAC	1 cut(s)	81
BstX2I	RGATCY	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	524
BsuI	GTATCC	1 cut(s)	474
BsuRI	GGCC	4 cut(s)	153, 376, 605, 733
BtgI	CCRYGG	2 cut(s)	146, 351
BtsCI	GGATG	4 cut(s)	104, 325, 361, 743
BtsIMutI	CAGTG	1 cut(s)	49
Cac8I	GCNNGC	2 cut(s)	489, 547
CaiI	CAGNNNCTG	1 cut(s)	261
CfoI	GCGC	1 cut(s)	551
Cfr13I	GGNCC	4 cut(s)	151, 425, 444, 604
Csp6I	GTAC	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	8 cut(s)	52, 147, 352, 393, 430, 457, 509, 683
CviQI	GTAC	1 cut(s)	235
DpnI	GATC	3 cut(s)	189, 526, 649
DpnII	GATC	3 cut(s)	187, 524, 647
Eam1104I	CTCTTC	3 cut(s)	213, 405, 558
EarI	CTCTTC	3 cut(s)	213, 405, 558
Eco130I	CCWWGG	3 cut(s)	67, 146, 351
Eco147I	AGGCCT	2 cut(s)	376, 733
Eco32I	GATATC	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	425, 444
Eco47III	AGCGCT	1 cut(s)	550
Eco57I	CTGAAG	2 cut(s)	513, 582
EcoO109I	RGGNCCY	1 cut(s)	425
EcoRII	CCWGG	3 cut(s)	264, 597, 637
EcoRV	GATATC	1 cut(s)	506
EcoT14I	CCWWGG	3 cut(s)	67, 146, 351
EcoT22I	ATGCAT	1 cut(s)	435
ErhI	CCWWGG	3 cut(s)	67, 146, 351
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	8 cut(s)	55, 150, 355, 396, 433, 460, 512, 686
FaqI	GGGAC	3 cut(s)	328, 411, 430
FatI	CATG	8 cut(s)	51, 146, 351, 392, 429, 456, 508, 682
Fnu4HI	GCNGC	6 cut(s)	154, 176, 179, 485, 715, 718
FokI	GGATG	4 cut(s)	111, 332, 368, 730
Fsp4HI	GCNGC	6 cut(s)	154, 176, 179, 485, 715, 718
FspBI	CTAG	3 cut(s)	542, 546, 645
GlaI	GCGC	1 cut(s)	550
GluI	GCNGC	6 cut(s)	154, 176, 179, 485, 715, 718
GsuI	CTGGAG	2 cut(s)	261, 620
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	4 cut(s)	153, 376, 605, 733
HhaI	GCGC	1 cut(s)	551
Hin1II	CATG	8 cut(s)	55, 150, 355, 396, 433, 460, 512, 686
Hin6I	GCGC	1 cut(s)	549
HinP1I	GCGC	1 cut(s)	549
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	5 cut(s)	121, 205, 220, 656, 686
Hpy166II	GTNNAC	2 cut(s)	49, 328
Hpy188I	TCNGA	3 cut(s)	522, 558, 652
Hpy188III	TCNNGA	5 cut(s)	217, 278, 308, 645, 663
Hpy8I	GTNNAC	2 cut(s)	49, 328
HpyAV	CCTTC	3 cut(s)	73, 375, 477
HpyCH4III	ACNGT	1 cut(s)	344
HpyCH4V	TGCA	4 cut(s)	13, 328, 433, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	261, 618, 705, 714
Hsp92II	CATG	8 cut(s)	55, 150, 355, 396, 433, 460, 512, 686
HspAI	GCGC	1 cut(s)	549
KflI	GGGWCCC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	187, 524, 647
LguI	GCTCTTC	1 cut(s)	558
Lsp1109I	GCAGC	4 cut(s)	162, 496, 704, 726
LweI	GCATC	1 cut(s)	442
MaeI	CTAG	3 cut(s)	542, 546, 645
MalI	GATC	3 cut(s)	189, 526, 649
MboI	GATC	3 cut(s)	187, 524, 647
MboII	GAAGA	7 cut(s)	81, 182, 200, 422, 545, 575, 602
MflI	RGATCY	1 cut(s)	524
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	2 cut(s)	30, 249
MlyI	GAGTC	2 cut(s)	130, 199
MmeI	TCCRAC	2 cut(s)	76, 265
MnlI	CCTC	5 cut(s)	399, 400, 595, 646, 744
Mph1103I	ATGCAT	1 cut(s)	435
MseI	TTAA	3 cut(s)	35, 162, 246
MspA1I	CMGCKG	1 cut(s)	717
MspR9I	CCNGG	3 cut(s)	266, 599, 639
Mva1269I	GAATGC	1 cut(s)	678
MvaI	CCWGG	3 cut(s)	266, 599, 639
MwoI	GCNNNNNNNGC	4 cut(s)	261, 618, 705, 714
NcoI	CCATGG	2 cut(s)	146, 351
NdeII	GATC	3 cut(s)	187, 524, 647
NheI	GCTAGC	1 cut(s)	545
NlaIII	CATG	8 cut(s)	55, 150, 355, 396, 433, 460, 512, 686
NlaIV	GGNNCC	5 cut(s)	61, 152, 426, 427, 446
NsiI	ATGCAT	1 cut(s)	435
PceI	AGGCCT	2 cut(s)	376, 733
PciSI	GCTCTTC	1 cut(s)	558
PctI	GAATGC	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	220, 656, 686
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	6 cut(s)	155, 177, 180, 486, 716, 719
PleI	GAGTC	2 cut(s)	129, 199
PpsI	GAGTC	2 cut(s)	129, 199
PpuMI	RGGWCCY	1 cut(s)	425
Psp5II	RGGWCCY	1 cut(s)	425
Psp6I	CCWGG	3 cut(s)	264, 597, 637
PspGI	CCWGG	3 cut(s)	264, 597, 637
PspN4I	GGNNCC	5 cut(s)	61, 152, 426, 427, 446
PspPI	GGNCC	4 cut(s)	151, 425, 444, 604
PspPPI	RGGWCCY	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	261
PsuI	RGATCY	1 cut(s)	524
PvuII	CAGCTG	1 cut(s)	717
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	3 cut(s)	35, 162, 246
SatI	GCNGC	6 cut(s)	154, 176, 179, 485, 715, 718
Sau3AI	GATC	3 cut(s)	187, 524, 647
Sau96I	GGNCC	4 cut(s)	151, 425, 444, 604
SchI	GAGTC	2 cut(s)	130, 199
ScrFI	CCNGG	3 cut(s)	266, 599, 639
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	168, 295, 306, 547, 600, 701, 719
SfaNI	GCATC	1 cut(s)	442
SinI	GGWCC	2 cut(s)	425, 444
SmlI	CTYRAG	3 cut(s)	215, 694, 721
SmoI	CTYRAG	3 cut(s)	215, 694, 721
Sse9I	AATT	2 cut(s)	30, 249
SseBI	AGGCCT	2 cut(s)	376, 733
SsiI	CCGC	3 cut(s)	154, 178, 712
SspI	AATATT	1 cut(s)	39
SspMI	CTAG	3 cut(s)	542, 546, 645
StuI	AGGCCT	2 cut(s)	376, 733
StyD4I	CCNGG	3 cut(s)	264, 597, 637
StyI	CCWWGG	3 cut(s)	67, 146, 351
TaaI	ACNGT	1 cut(s)	344
TaqI	TCGA	1 cut(s)	168
TasI	AATT	2 cut(s)	30, 249
TatI	WGTACW	1 cut(s)	234
TauI	GCSGC	2 cut(s)	156, 181
TfiI	GAWTC	3 cut(s)	220, 656, 686
Tru1I	TTAA	3 cut(s)	35, 162, 246
Tru9I	TTAA	3 cut(s)	35, 162, 246
TscAI	CASTG	1 cut(s)	49
TseI	GCWGC	4 cut(s)	175, 484, 714, 717
TspDTI	ATGAA	4 cut(s)	200, 387, 603, 732
TspGWI	ACGGA	1 cut(s)	332
TspRI	CASTG	1 cut(s)	49
Van91I	CCANNNNNTGG	1 cut(s)	284
VneI	GTGCAC	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	425, 444
XbaI	TCTAGA	1 cut(s)	644
XspI	CTAG	3 cut(s)	542, 546, 645
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.