Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0002140

Physical Location & Seq

Genomic Coordinates Reverse (-)

9779529 .. 9785902

Gene Structure 6374 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G086300.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTCTTGTGATACTGCAAAAGAGAACGCATCTGTAGTTGACTCATCTGTTACTGAATGGAAACAAGACATGGGAAACTCAGATGATCCAGAAAGTTCAAGTCACAAAGTTAATGAGGAGGGTAATCCTTCTAAGTCAGAAGAAGGGGGGCATTGTCATGATCAGGGTGGAAAAACAACTGGAAGAAAAAAGGGTACTTTGTATGATACAAGATATTTCATCATTAAGAGTTTGAATCATCAAAATATCCAACTATCAATTGAGAAAGGAATTTGGGCTACTCAAGTCATGAATGAACCAATTTTGGAAGAGGCCTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTCTTTCCAAGGGTATGCCCAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCATGGGGGCGCAGTTTTAAGGTCAAATGGCTGCAGTTAAATGATCTGCCTTTCCAAAAGACTCTTCATCTCAAGAATCCATTGAACGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTATCTCCAGATGTTGGAGAAGCTCTTTGTGAGCTTCTTGATGGGACAAATGATGTGAATGGACTGAATAGTGTTGCTATGGAGGATTTTCCATCAAAAAGGCCTTGTATAGAGCCTCCATGTTCATTAGGTGAGGAAGAGTATAATGTAGGCCCCATGCATCTCTCATGGTCCCAGACACCCATGCACTATCCCTCCTTGCTTTACCAACATCAGGCTGAAGCAAATTTGCCTGTCAATTCTGTGGCATCAAAAGTTACAAGGGCAAAACATTCTCGCATTAATGGACACCATTCTAATATACGAGTGGACAGGGATTTGTCATCTCGGTTTGATGTTTGGGGTTTGTCTGCAGAAAGCCGTCTAGCAAGTGTTCTTACTGAGGATGATTTTCTGGAAATGTCTTATGAAGAATACCTGGAGGCCCAAAGTAGAAGTAGCAAGGAATTATCTCTGCCTGGTTCGAGACCACATGAGTCATCAAGAAGTAAAATGCAGGAAGATGATTTAAGCTCAAGCTATGGAATTGACCGCAGCTGCTCAAGGAAAAGGGCTCACCATTCATCCCATAAGAAATCACAATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

388

Amino Acids

43.53

Weight (kDa)

6.07

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970
fragaria_vesca	FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140
malus_domestica	MD06G1069100.v1.1
prunus_persica	Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1
pyrus_communis	pycom06g06770
rosa_chinensis	RchiOBHm_Chr7g0199981 RchiOBHm_Chr7g0200101
rosa_laevigata	RLG00000003755
rosa_multiflora	Rmu_sc0006685.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256310
rosa_rugosa	Rorug07G0057600
rosa_samantha	Rh7AG182800 Rh7BG186000 Rh7CG192600 Rh7DG185800 Rh7DG187000
rosa_wichuraiana	Rw7G016030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	1 cut(s)	1108
AclWI	GGATC	1 cut(s)	80
AcsI	RAATTY	2 cut(s)	270, 802
AcuI	CTGAAG	1 cut(s)	816
AfaI	GTAC	2 cut(s)	196, 542
AfiI	CCNNNNNNNGG	2 cut(s)	590, 790
AgsI	TTSAA	3 cut(s)	99, 235, 535
AjnI	CCWGG	3 cut(s)	570, 993, 1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	5 cut(s)	599, 610, 1089, 1095, 1113
AluI	AGCT	5 cut(s)	599, 610, 1089, 1095, 1113
Alw26I	GTCTC	3 cut(s)	408, 558, 1036
AlwI	GGATC	1 cut(s)	80
AlwNI	CAGNNNCTG	1 cut(s)	567
AoxI	GGCC	4 cut(s)	312, 677, 727, 999
ApeKI	GCWGC	3 cut(s)	481, 1110, 1113
ApoI	RAATTY	2 cut(s)	270, 802
AseI	ATTAAT	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	3 cut(s)	728, 747, 1000
AsuHPI	GGTGA	2 cut(s)	719, 1124
AvaII	GGWCC	1 cut(s)	747
BanII	GRGCYC	1 cut(s)	1132
BbsI	GAAGAC	1 cut(s)	387
BbvI	GCAGC	3 cut(s)	468, 1100, 1122
BccI	CCATC	3 cut(s)	399, 611, 676
BceAI	ACGGC	1 cut(s)	921
BciT130I	CCWGG	3 cut(s)	572, 995, 1035
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	408, 558, 1036
BfaI	CTAG	1 cut(s)	941
BfmI	CTRYAG	3 cut(s)	33, 482, 927
BisI	GCNGC	3 cut(s)	482, 1111, 1114
BlsI	GCNGC	3 cut(s)	483, 1112, 1115
Bme1390I	CCNGG	3 cut(s)	572, 995, 1035
Bme18I	GGWCC	1 cut(s)	747
BmgT120I	GGNCC	3 cut(s)	728, 747, 1000
BmiI	GGNNCC	2 cut(s)	730, 749
BmrFI	CCNGG	3 cut(s)	572, 995, 1035
BmsI	GCATC	3 cut(s)	38, 745, 833
BpiI	GAAGAC	1 cut(s)	387
BpmI	CTGGAG	2 cut(s)	567, 1016
BpuEI	CTTGAG	4 cut(s)	267, 506, 1075, 1102
BsaI	GGTCTC	1 cut(s)	1036
BsaJI	CCNNGG	2 cut(s)	373, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	590, 790
Bse1I	ACTGG	1 cut(s)	184
BseBI	CCWGG	3 cut(s)	572, 995, 1035
BseDI	CCNNGG	2 cut(s)	373, 452
BseGI	GGATG	3 cut(s)	410, 967, 1139
BseLI	CCNNNNNNNGG	2 cut(s)	590, 790
BseMII	CTCAG	2 cut(s)	93, 948
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	131
BseXI	GCAGC	3 cut(s)	468, 1100, 1122
BshFI	GGCC	4 cut(s)	314, 679, 729, 1001
BslFI	GGGAC	2 cut(s)	634, 733
BslI	CCNNNNNNNGG	2 cut(s)	590, 790
BsmAI	GTCTC	3 cut(s)	408, 558, 1036
BsmFI	GGGAC	2 cut(s)	634, 733
BsnI	GGCC	4 cut(s)	314, 679, 729, 1001
Bso31I	GGTCTC	1 cut(s)	1036
Bsp1286I	GDGCHC	1 cut(s)	1132
Bsp143I	GATC	3 cut(s)	85, 160, 493
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	1 cut(s)	1108
BspANI	GGCC	4 cut(s)	314, 679, 729, 1001
BspCNI	CTCAG	2 cut(s)	92, 949
BspHI	TCATGA	2 cut(s)	157, 288
BspLI	GGNNCC	2 cut(s)	730, 749
BspMAI	CTGCAG	2 cut(s)	486, 931
BspPI	GGATC	1 cut(s)	80
BspTNI	GGTCTC	1 cut(s)	1036
BsrI	ACTGG	1 cut(s)	184
BssECI	CCNNGG	2 cut(s)	373, 452
BssMI	GATC	3 cut(s)	85, 160, 493
BssT1I	CCWWGG	2 cut(s)	373, 452
Bst2UI	CCWGG	3 cut(s)	572, 995, 1035
Bst6I	CTCTTC	3 cut(s)	303, 519, 708
BstAPI	GCANNNNNTGC	1 cut(s)	567
BstDEI	CTNAG	3 cut(s)	79, 132, 957
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	410, 967, 1139
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	3 cut(s)	88, 163, 496
BstMAI	GTCTC	3 cut(s)	408, 558, 1036
BstMBI	GATC	3 cut(s)	85, 160, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	567
BstNI	CCWGG	3 cut(s)	572, 995, 1035
BstSCI	CCNGG	3 cut(s)	570, 993, 1033
BstSFI	CTRYAG	3 cut(s)	33, 482, 927
BstV1I	GCAGC	3 cut(s)	468, 1100, 1122
BstV2I	GAAGAC	1 cut(s)	387
BsuRI	GGCC	4 cut(s)	314, 679, 729, 1001
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	410, 967, 1139
BtsIMutI	CAGTG	1 cut(s)	355
CaiI	CAGNNNCTG	1 cut(s)	567
CciI	TCATGA	2 cut(s)	157, 288
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	3 cut(s)	728, 747, 1000
Csp6I	GTAC	2 cut(s)	195, 541
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviQI	GTAC	2 cut(s)	195, 541
DdeI	CTNAG	3 cut(s)	79, 132, 957
DpnI	GATC	3 cut(s)	87, 162, 495
DpnII	GATC	3 cut(s)	85, 160, 493
Eam1104I	CTCTTC	3 cut(s)	303, 519, 708
EarI	CTCTTC	3 cut(s)	303, 519, 708
Eco130I	CCWWGG	2 cut(s)	373, 452
Eco147I	AGGCCT	2 cut(s)	314, 679
Eco24I	GRGCYC	1 cut(s)	1132
Eco31I	GGTCTC	1 cut(s)	1036
Eco47I	GGWCC	1 cut(s)	747
Eco57I	CTGAAG	1 cut(s)	816
EcoO109I	RGGNCCY	1 cut(s)	728
EcoRII	CCWGG	3 cut(s)	570, 993, 1033
EcoT14I	CCWWGG	2 cut(s)	373, 452
EcoT22I	ATGCAT	1 cut(s)	738
EcoT38I	GRGCYC	1 cut(s)	1132
ErhI	CCWWGG	2 cut(s)	373, 452
FaqI	GGGAC	2 cut(s)	634, 733
FbaI	TGATCA	1 cut(s)	160
Fnu4HI	GCNGC	3 cut(s)	482, 1111, 1114
FokI	GGATG	3 cut(s)	417, 974, 1126
FriOI	GRGCYC	1 cut(s)	1132
Fsp4HI	GCNGC	3 cut(s)	482, 1111, 1114
FspBI	CTAG	1 cut(s)	941
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	3 cut(s)	482, 1111, 1114
GsuI	CTGGAG	2 cut(s)	567, 1016
HaeIII	GGCC	4 cut(s)	314, 679, 729, 1001
HhaI	GCGC	1 cut(s)	462
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	2 cut(s)	40, 355
HindII	GTYRAC	2 cut(s)	40, 355
HinfI	GANTC	6 cut(s)	41, 235, 427, 511, 526, 1052
HphI	GGTGA	2 cut(s)	719, 1124
Hpy166II	GTNNAC	3 cut(s)	40, 355, 886
Hpy188I	TCNGA	2 cut(s)	82, 139
Hpy188III	TCNNGA	9 cut(s)	89, 158, 289, 523, 584, 614, 971, 1041, 1059
Hpy8I	GTNNAC	3 cut(s)	40, 355, 886
HpyAV	CCTTC	2 cut(s)	137, 138
HpyCH4V	TGCA	6 cut(s)	17, 484, 736, 763, 929, 1072
HpyF10VI	GCNNNNNNNGC	1 cut(s)	567
HpyF3I	CTNAG	3 cut(s)	79, 132, 957
HspAI	GCGC	1 cut(s)	460
Ksp22I	TGATCA	1 cut(s)	160
Kzo9I	GATC	3 cut(s)	85, 160, 493
Lsp1109I	GCAGC	3 cut(s)	468, 1100, 1122
LweI	GCATC	3 cut(s)	38, 745, 833
MaeI	CTAG	1 cut(s)	941
MaeIII	GTNAC	3 cut(s)	49, 101, 832
MalI	GATC	3 cut(s)	87, 162, 495
MboI	GATC	3 cut(s)	85, 160, 493
MboII	GAAGA	8 cut(s)	152, 195, 320, 387, 506, 725, 998, 1088
MfeI	CAATTG	1 cut(s)	258
MhlI	GDGCHC	1 cut(s)	1132
MlyI	GAGTC	4 cut(s)	35, 436, 505, 1061
MmeI	TCCRAC	3 cut(s)	274, 382, 571
Mph1103I	ATGCAT	1 cut(s)	738
MseI	TTAA	8 cut(s)	111, 225, 341, 468, 488, 552, 858, 1085
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	1113
MspR9I	CCNGG	3 cut(s)	572, 995, 1035
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	3 cut(s)	572, 995, 1035
MwoI	GCNNNNNNNGC	1 cut(s)	567
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	3 cut(s)	85, 160, 493
NlaIV	GGNNCC	2 cut(s)	730, 749
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	738
PagI	TCATGA	2 cut(s)	157, 288
PceI	AGGCCT	2 cut(s)	314, 679
PfeI	GAWTC	2 cut(s)	235, 526
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	3 cut(s)	483, 1112, 1115
PleI	GAGTC	4 cut(s)	35, 435, 505, 1060
PpsI	GAGTC	4 cut(s)	35, 435, 505, 1060
PshBI	ATTAAT	1 cut(s)	858
Psp6I	CCWGG	3 cut(s)	570, 993, 1033
PspGI	CCWGG	3 cut(s)	570, 993, 1033
PspN4I	GGNNCC	2 cut(s)	730, 749
PspPI	GGNCC	3 cut(s)	728, 747, 1000
PstI	CTGCAG	2 cut(s)	486, 931
PstNI	CAGNNNCTG	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	1113
RsaI	GTAC	2 cut(s)	196, 542
RsaNI	GTAC	2 cut(s)	195, 541
RseI	CAYNNNNRTG	1 cut(s)	156
SaqAI	TTAA	8 cut(s)	111, 225, 341, 468, 488, 552, 858, 1085
SatI	GCNGC	3 cut(s)	482, 1111, 1114
Sau3AI	GATC	3 cut(s)	85, 160, 493
Sau96I	GGNCC	3 cut(s)	728, 747, 1000
SchI	GAGTC	4 cut(s)	35, 436, 505, 1061
ScrFI	CCNGG	3 cut(s)	572, 995, 1035
SduI	GDGCHC	1 cut(s)	1132
SetI	ASST	9 cut(s)	474, 550, 601, 612, 709, 996, 1091, 1097, 1115
SfaNI	GCATC	3 cut(s)	38, 745, 833
SfcI	CTRYAG	3 cut(s)	33, 482, 927
SinI	GGWCC	1 cut(s)	747
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	4 cut(s)	282, 521, 1090, 1117
SmoI	CTYRAG	4 cut(s)	282, 521, 1090, 1117
SseBI	AGGCCT	2 cut(s)	314, 679
SsiI	CCGC	1 cut(s)	1108
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	1 cut(s)	941
StuI	AGGCCT	2 cut(s)	314, 679
StyD4I	CCNGG	3 cut(s)	570, 993, 1033
StyI	CCWWGG	2 cut(s)	373, 452
TaqI	TCGA	1 cut(s)	1040
TatI	WGTACW	1 cut(s)	540
TfiI	GAWTC	2 cut(s)	235, 526
Tru1I	TTAA	8 cut(s)	111, 225, 341, 468, 488, 552, 858, 1085
Tru9I	TTAA	8 cut(s)	111, 225, 341, 468, 488, 552, 858, 1085
TscAI	CASTG	1 cut(s)	355
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	481, 1110, 1113
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	8 cut(s)	208, 305, 308, 309, 506, 690, 999, 1128
TspRI	CASTG	1 cut(s)	355
Van91I	CCANNNNNTGG	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	747
VspI	ATTAAT	1 cut(s)	858
XapI	RAATTY	2 cut(s)	270, 802
XspI	CTAG	1 cut(s)	941
Zsp2I	ATGCAT	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.