Rh7CG192600

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002140
Physical Location & Seq
Forward (+)
17015245 .. 17021613
6369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG192600.1

Sequence Viewer

Length: 963 bp
ATGTCGTGTGATACTGCAAAGGAAAATGCATCTGTAGTGGACTCATCTGTTACTGAAAGGAAAGAAGACATGGGGAATTCAGATGAGCCAGAGAGTTCAAGTCACAAAGTTCCCGAGGGGGTTGATCCATGTAGATCAGATGAAGTGGGGCACTCTCATGATCATGTTGGAGATTCACCTGCAAGGAAAAAGGGTAAATTGTATGGTACACGATTTTTCATCATTAAGAGTTTGTCTCATGAGAATATCCAACTATCGATTGAGAAAGGAATTTGGGCTACTCAAGTGATGAATGAACCAATTTTGGAAGACGCTTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCGTAATGATCTGAACGGCCTGAATAGGCCCTGCGTAGAGCCTCCATGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCGCAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATATCTGGAGGTCTATGGCAGAAGCAGGAAGGAACTATATCAGCCTGTCAGTATTCTATCTAAGAATATCGTATTGATTGCTTATAAATATGTGCTAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

320

Amino Acids

36.54

Weight (kDa)

5.89

Isoelectric Point (pI)

54.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 70 - 205 3e-50 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 945
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 590
AciI CCGC 1 cut(s) 484
AclWI GGATC 1 cut(s) 119
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 2 cut(s) 76, 270
AfaI GTAC 2 cut(s) 208, 542
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 3 cut(s) 99, 535, 845
AjnI CCWGG 2 cut(s) 452, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 3 cut(s) 599, 610, 815
AluI AGCT 3 cut(s) 599, 610, 815
Alw26I GTCTC 4 cut(s) 240, 408, 558, 585
AlwI GGATC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 3 cut(s) 637, 647, 809
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 76, 270
AspS9I GGNCC 1 cut(s) 648
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 153
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 72, 315, 387
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 652
BciT130I CCWGG 2 cut(s) 454, 572
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 4 cut(s) 240, 408, 558, 585
BfaI CTAG 3 cut(s) 782, 816, 956
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 454, 572
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 648
BmrFI CCNGG 2 cut(s) 454, 572
BmsI GCATC 2 cut(s) 38, 712
BpiI GAAGAC 3 cut(s) 72, 315, 387
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 585, 617
BpmI CTGGAG 2 cut(s) 567, 887
BpuEI CTTGAG 2 cut(s) 267, 506
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 114, 373, 452, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 1 cut(s) 698
BseBI CCWGG 2 cut(s) 454, 572
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 114, 373, 452, 453
BseGI GGATG 2 cut(s) 410, 838
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 1 cut(s) 468
BshFI GGCC 3 cut(s) 639, 649, 811
BshVI ATCGAT 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 113
BsiSI CCGG 1 cut(s) 808
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 4 cut(s) 240, 408, 558, 585
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 3 cut(s) 639, 649, 811
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 5 cut(s) 124, 134, 160, 493, 628
BspACI CCGC 1 cut(s) 484
BspANI GGCC 3 cut(s) 639, 649, 811
BspCNI CTCAG 1 cut(s) 820
BspDI ATCGAT 1 cut(s) 257
BspHI TCATGA 2 cut(s) 157, 238
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 1 cut(s) 807
BssECI CCNNGG 4 cut(s) 114, 373, 452, 453
BssMI GATC 5 cut(s) 124, 134, 160, 493, 628
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 2 cut(s) 454, 572
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 809, 813
BstDEI CTNAG 2 cut(s) 828, 921
BstF5I GGATG 2 cut(s) 410, 838
BstKTI GATC 5 cut(s) 127, 137, 163, 496, 631
BstMAI GTCTC 4 cut(s) 240, 408, 558, 585
BstMBI GATC 5 cut(s) 124, 134, 160, 493, 628
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 2 cut(s) 454, 572
BstSCI CCNGG 2 cut(s) 452, 570
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 468
BstV2I GAAGAC 3 cut(s) 72, 315, 387
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 3 cut(s) 639, 649, 811
BsuTUI ATCGAT 1 cut(s) 257
BtsCI GGATG 2 cut(s) 410, 838
BtsIMutI CAGTG 2 cut(s) 355, 705
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 809, 813
CaiI CAGNNNCTG 1 cut(s) 567
CciI TCATGA 2 cut(s) 157, 238
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 648
ClaI ATCGAT 1 cut(s) 257
CseI GACGC 2 cut(s) 320, 468
Csp6I GTAC 2 cut(s) 207, 541
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 9 cut(s) 70, 129, 158, 164, 239, 358, 666, 727, 742
CviQI GTAC 2 cut(s) 207, 541
DdeI CTNAG 2 cut(s) 828, 921
DpnI GATC 5 cut(s) 126, 136, 162, 495, 630
DpnII GATC 5 cut(s) 124, 134, 160, 493, 628
EaeI YGGCCR 1 cut(s) 809
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 452, 570
EcoT14I CCWWGG 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 669, 730, 745
FaqI GGGAC 1 cut(s) 471
FatI CATG 9 cut(s) 69, 128, 157, 163, 238, 357, 665, 726, 741
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 2 cut(s) 417, 845
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 3 cut(s) 782, 816, 956
GluI GCNGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 567, 887
HaeIII GGCC 3 cut(s) 639, 649, 811
HapII CCGG 1 cut(s) 808
HgaI GACGC 2 cut(s) 320, 468
Hin1II CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 669, 730, 745
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 5 cut(s) 41, 173, 427, 526, 787
HpaII CCGG 1 cut(s) 808
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 3 cut(s) 40, 209, 355
Hpy188I TCNGA 5 cut(s) 82, 139, 633, 792, 825
Hpy188III TCNNGA 8 cut(s) 113, 158, 239, 523, 584, 614, 842, 866
Hpy8I GTNNAC 3 cut(s) 40, 209, 355
HpyAV CCTTC 2 cut(s) 747, 883
HpyCH4V TGCA 5 cut(s) 17, 29, 182, 383, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 2 cut(s) 828, 921
Hsp92II CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 669, 730, 745
KroI GCCGGC 1 cut(s) 807
KroNI GCCGGC 1 cut(s) 809
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 124, 134, 160, 493, 628
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 38, 712
MaeI CTAG 3 cut(s) 782, 816, 956
MaeIII GTNAC 2 cut(s) 49, 101
MalI GATC 5 cut(s) 126, 136, 162, 495, 630
MboI GATC 5 cut(s) 124, 134, 160, 493, 628
MboII GAAGA 6 cut(s) 77, 320, 361, 387, 506, 869
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 7 cut(s) 76, 197, 270, 300, 322, 336, 555
MlyI GAGTC 2 cut(s) 35, 436
MmeI TCCRAC 5 cut(s) 148, 274, 382, 529, 571
MnlI CCTC 5 cut(s) 109, 402, 672, 823, 862
Mph1103I ATGCAT 1 cut(s) 31
MroNI GCCGGC 1 cut(s) 807
MseI TTAA 5 cut(s) 225, 341, 468, 488, 552
MslI CAYNNNNRTG 2 cut(s) 156, 162
MspI CCGG 1 cut(s) 808
MspR9I CCNGG 2 cut(s) 454, 572
MvaI CCWGG 2 cut(s) 454, 572
MwoI GCNNNNNNNGC 1 cut(s) 567
NaeI GCCGGC 1 cut(s) 809
NdeII GATC 5 cut(s) 124, 134, 160, 493, 628
NgoMIV GCCGGC 1 cut(s) 807
NlaIII CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 669, 730, 745
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 31
PagI TCATGA 2 cut(s) 157, 238
PaqCI CACCTGC 1 cut(s) 187
PasI CCCWGGG 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 809
PfeI GAWTC 3 cut(s) 173, 526, 787
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 2 cut(s) 35, 435
PpsI GAGTC 2 cut(s) 35, 435
PsiI TTATAA 1 cut(s) 945
Psp6I CCWGG 2 cut(s) 452, 570
PspGI CCWGG 2 cut(s) 452, 570
PspPI GGNCC 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 208, 542
RsaNI GTAC 2 cut(s) 207, 541
RseI CAYNNNNRTG 2 cut(s) 156, 162
SaqAI TTAA 5 cut(s) 225, 341, 468, 488, 552
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 5 cut(s) 124, 134, 160, 493, 628
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 2 cut(s) 35, 436
ScrFI CCNGG 2 cut(s) 454, 572
SduI GDGCHC 1 cut(s) 153
SetI ASST 7 cut(s) 181, 474, 550, 601, 612, 817, 873
SfaNI GCATC 2 cut(s) 38, 712
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 156, 162
SmlI CTYRAG 2 cut(s) 282, 521
SmoI CTYRAG 2 cut(s) 282, 521
Sse9I AATT 7 cut(s) 76, 197, 270, 300, 322, 336, 555
SsiI CCGC 1 cut(s) 484
SspI AATATT 1 cut(s) 345
SspMI CTAG 3 cut(s) 782, 816, 956
StyD4I CCNGG 2 cut(s) 452, 570
StyI CCWWGG 1 cut(s) 373
TaqI TCGA 1 cut(s) 257
TasI AATT 7 cut(s) 76, 197, 270, 300, 322, 336, 555
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 3 cut(s) 173, 526, 787
Tru1I TTAA 5 cut(s) 225, 341, 468, 488, 552
Tru9I TTAA 5 cut(s) 225, 341, 468, 488, 552
TscAI CASTG 2 cut(s) 355, 705
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 8 cut(s) 156, 208, 305, 308, 309, 506, 767, 870
TspRI CASTG 2 cut(s) 355, 705
Van91I CCANNNNNTGG 1 cut(s) 590
XapI RAATTY 2 cut(s) 76, 270
XspI CTAG 3 cut(s) 782, 816, 956
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.