Rh7AG182800

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0002140
Physical Location & Seq
Forward (+)
16277449 .. 16284206
6758 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG182800.1

Sequence Viewer

Length: 1095 bp
ATGTCCACTCTCGACGCCACTCACATCATTTCGAACACGTTTCAGAGCTCAGTGACTGCTGTATACATAACTGCCAAAAGTGTGTTCGGACTTGGGACTTGGGACTTGGGAAGCCGCAAACTGATTGCTACAACAAGTTCAACTACTTTTCGAAAACTAGGGCTCCCAACCCAACTCCTACTCTTTCACTTCCTCTCTTCTAAACAGGTTGATAGAGATATGTCGTGTGATACTGCAAAGGAAAATGCATCTGTAGTGGACTCATCTGTTACTGAAAGGAAAGAAGACATGGGGAATTCAGATGAGCCAGAGAGTTCAAGTCACAAAGTTCCCGAGGGGGTTGATCCATGTAGATCAGATGAAGTGGGGCACTTTCATGATCATGTTGGGGATTCACCTGCAAGGAAAAAGGGTAAATTGTATGGTACACGATATTTCATCATTAAGAGTTTGTCTCATGAGAATATCCAACTATCGATTGAGAAAGGAATTTGGGCTACTCAAGTGATGAATGAACCAATTTTGGAAGACGCTTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATAATGATCTAAACGGCCTGAATAGGCCCTGCGTAGAGCCTCCATGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTTTCGTGGTCGCAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGACGATGATTTTCTTGAAATGGTATCTTGTTCTATCTTCATTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

364

Amino Acids

41.02

Weight (kDa)

6.18

Isoelectric Point (pI)

46.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 143 - 278 4.3e-50 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 406
Acc36I ACCTGC 1 cut(s) 406
AccB7I CCANNNNNTGG 1 cut(s) 809
AccI GTMKAC 1 cut(s) 63
AciI CCGC 2 cut(s) 115, 703
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 1028
AcsI RAATTY 2 cut(s) 295, 489
AcyI GRCGYC 1 cut(s) 15
AfaI GTAC 2 cut(s) 427, 761
AfiI CCNNNNNNNGG 1 cut(s) 809
AflIII ACRYGT 1 cut(s) 36
AgsI TTSAA 4 cut(s) 141, 318, 754, 1064
AjnI CCWGG 2 cut(s) 671, 789
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 717, 749
AluBI AGCT 4 cut(s) 48, 818, 829, 1034
AluI AGCT 4 cut(s) 48, 818, 829, 1034
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 4 cut(s) 459, 627, 777, 804
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 2 cut(s) 56, 786
Ama87I CYCGRG 1 cut(s) 332
AoxI GGCC 3 cut(s) 856, 866, 1028
ApeKI GCWGC 1 cut(s) 700
ApoI RAATTY 2 cut(s) 295, 489
AspS9I GGNCC 1 cut(s) 867
AsuHPI GGTGA 1 cut(s) 387
AsuII TTCGAA 2 cut(s) 32, 151
AvaI CYCGRG 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 372
BanII GRGCYC 2 cut(s) 50, 165
BbsI GAAGAC 3 cut(s) 291, 534, 606
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 1 cut(s) 687
BccI CCATC 1 cut(s) 618
BceAI ACGGC 1 cut(s) 871
BciT130I CCWGG 2 cut(s) 673, 791
BclI TGATCA 1 cut(s) 379
BcoDI GTCTC 4 cut(s) 459, 627, 777, 804
BfaI CTAG 3 cut(s) 158, 1001, 1035
BfmI CTRYAG 1 cut(s) 252
BfuAI ACCTGC 1 cut(s) 406
BisI GCNGC 2 cut(s) 115, 701
BlsI GCNGC 2 cut(s) 116, 702
Bme1390I CCNGG 2 cut(s) 673, 791
BmeT110I CYCGRG 1 cut(s) 332
BmgT120I GGNCC 1 cut(s) 867
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 2 cut(s) 673, 791
BmsI GCATC 2 cut(s) 257, 931
BpiI GAAGAC 3 cut(s) 291, 534, 606
BplI GAGNNNNNCTC 4 cut(s) 439, 471, 804, 836
BpmI CTGGAG 1 cut(s) 786
Bpu14I TTCGAA 2 cut(s) 32, 151
BpuEI CTTGAG 2 cut(s) 486, 725
Bsa29I ATCGAT 1 cut(s) 476
BsaHI GRCGYC 1 cut(s) 15
BsaJI CCNNGG 4 cut(s) 333, 592, 671, 672
BsaXI ACNNNNNCTCC 2 cut(s) 147, 177
Bsc4I CCNNNNNNNGG 1 cut(s) 809
Bse118I RCCGGY 1 cut(s) 1026
Bse1I ACTGG 1 cut(s) 917
BseBI CCWGG 2 cut(s) 673, 791
BseCI ATCGAT 1 cut(s) 476
BseDI CCNNGG 4 cut(s) 333, 592, 671, 672
BseGI GGATG 1 cut(s) 629
BseLI CCNNNNNNNGG 1 cut(s) 809
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 917
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 687
BshFI GGCC 3 cut(s) 858, 868, 1030
BshVI ATCGAT 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 50
BsiHKCI CYCGRG 1 cut(s) 332
BsiSI CCGG 1 cut(s) 1027
BslFI GGGAC 3 cut(s) 109, 116, 690
BslI CCNNNNNNNGG 1 cut(s) 809
BsmAI GTCTC 4 cut(s) 459, 627, 777, 804
BsmFI GGGAC 3 cut(s) 109, 116, 690
BsnI GGCC 3 cut(s) 858, 868, 1030
BsoBI CYCGRG 1 cut(s) 332
Bsp119I TTCGAA 2 cut(s) 32, 151
Bsp1286I GDGCHC 3 cut(s) 50, 165, 372
Bsp143I GATC 5 cut(s) 343, 353, 379, 712, 847
BspACI CCGC 2 cut(s) 115, 703
BspANI GGCC 3 cut(s) 858, 868, 1030
BspCNI CTCAG 1 cut(s) 62
BspDI ATCGAT 1 cut(s) 476
BspHI TCATGA 2 cut(s) 376, 457
BspLI GGNNCC 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 406
BspPI GGATC 1 cut(s) 338
BspT104I TTCGAA 2 cut(s) 32, 151
BsrFI RCCGGY 1 cut(s) 1026
BsrI ACTGG 1 cut(s) 917
BssAI RCCGGY 1 cut(s) 1026
BssECI CCNNGG 4 cut(s) 333, 592, 671, 672
BssMI GATC 5 cut(s) 343, 353, 379, 712, 847
BssNAI GTATAC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 15
BssT1I CCWWGG 1 cut(s) 592
Bst1107I GTATAC 1 cut(s) 64
Bst2UI CCWGG 2 cut(s) 673, 791
Bst6I CTCTTC 2 cut(s) 202, 738
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 786
BstBI TTCGAA 2 cut(s) 32, 151
BstC8I GCNNGC 2 cut(s) 1028, 1032
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 629
BstKTI GATC 5 cut(s) 346, 356, 382, 715, 850
BstMAI GTCTC 4 cut(s) 459, 627, 777, 804
BstMBI GATC 5 cut(s) 343, 353, 379, 712, 847
BstMWI GCNNNNNNNGC 1 cut(s) 786
BstNI CCWGG 2 cut(s) 673, 791
BstSCI CCNGG 2 cut(s) 671, 789
BstSFI CTRYAG 1 cut(s) 252
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 687
BstV2I GAAGAC 3 cut(s) 291, 534, 606
BstZ17I GTATAC 1 cut(s) 64
Bsu15I ATCGAT 1 cut(s) 476
BsuRI GGCC 3 cut(s) 858, 868, 1030
BsuTUI ATCGAT 1 cut(s) 476
BtsCI GGATG 1 cut(s) 629
BtsIMutI CAGTG 3 cut(s) 57, 574, 924
BveI ACCTGC 1 cut(s) 406
Cac8I GCNNGC 2 cut(s) 1028, 1032
CaiI CAGNNNCTG 2 cut(s) 56, 786
CciI TCATGA 2 cut(s) 376, 457
Cfr10I RCCGGY 1 cut(s) 1026
Cfr13I GGNCC 1 cut(s) 867
ClaI ATCGAT 1 cut(s) 476
CseI GACGC 3 cut(s) 23, 539, 687
Csp6I GTAC 2 cut(s) 426, 760
CspCI CAANNNNNGTGG 2 cut(s) 562, 597
CviAII CATG 9 cut(s) 289, 348, 377, 383, 458, 577, 885, 946, 961
CviQI GTAC 2 cut(s) 426, 760
DdeI CTNAG 1 cut(s) 49
DpnI GATC 5 cut(s) 345, 355, 381, 714, 849
DpnII GATC 5 cut(s) 343, 353, 379, 712, 847
EaeI YGGCCR 1 cut(s) 1028
Eam1104I CTCTTC 2 cut(s) 202, 738
EarI CTCTTC 2 cut(s) 202, 738
Ecl136II GAGCTC 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 592
Eco24I GRGCYC 2 cut(s) 50, 165
Eco53kI GAGCTC 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 332
EcoICRI GAGCTC 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 867
EcoRI GAATTC 1 cut(s) 295
EcoRII CCWGG 2 cut(s) 671, 789
EcoT14I CCWWGG 1 cut(s) 592
EcoT22I ATGCAT 1 cut(s) 250
EcoT38I GRGCYC 2 cut(s) 50, 165
ErhI CCWWGG 1 cut(s) 592
FaeI CATG 9 cut(s) 292, 351, 380, 386, 461, 580, 888, 949, 964
FaqI GGGAC 3 cut(s) 109, 116, 690
FatI CATG 9 cut(s) 288, 347, 376, 382, 457, 576, 884, 945, 960
FbaI TGATCA 1 cut(s) 379
FblI GTMKAC 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 115, 701
FokI GGATG 1 cut(s) 636
FriOI GRGCYC 2 cut(s) 50, 165
Fsp4HI GCNGC 2 cut(s) 115, 701
FspBI CTAG 3 cut(s) 158, 1001, 1035
GluI GCNGC 2 cut(s) 115, 701
GsuI CTGGAG 1 cut(s) 786
HaeIII GGCC 3 cut(s) 858, 868, 1030
HapII CCGG 1 cut(s) 1027
HgaI GACGC 3 cut(s) 23, 539, 687
Hin1I GRCGYC 1 cut(s) 15
Hin1II CATG 9 cut(s) 292, 351, 380, 386, 461, 580, 888, 949, 964
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 260, 392, 646, 745, 1006
HpaII CCGG 1 cut(s) 1027
HphI GGTGA 1 cut(s) 387
Hpy166II GTNNAC 5 cut(s) 6, 64, 259, 428, 574
Hpy188I TCNGA 6 cut(s) 45, 89, 301, 358, 1011, 1044
Hpy188III TCNNGA 9 cut(s) 11, 332, 377, 458, 742, 803, 833, 1061, 1092
Hpy8I GTNNAC 5 cut(s) 6, 64, 259, 428, 574
Hpy99I CGWCG 1 cut(s) 17
HpyAV CCTTC 1 cut(s) 966
HpyCH4IV ACGT 1 cut(s) 38
HpyCH4V TGCA 5 cut(s) 236, 248, 401, 602, 922
HpyF10VI GCNNNNNNNGC 1 cut(s) 786
HpyF3I CTNAG 1 cut(s) 49
HpySE526I ACGT 1 cut(s) 38
Hsp92I GRCGYC 1 cut(s) 15
Hsp92II CATG 9 cut(s) 292, 351, 380, 386, 461, 580, 888, 949, 964
KroI GCCGGC 1 cut(s) 1026
KroNI GCCGGC 1 cut(s) 1028
Ksp22I TGATCA 1 cut(s) 379
Kzo9I GATC 5 cut(s) 343, 353, 379, 712, 847
LmnI GCTCC 1 cut(s) 168
Lsp1109I GCAGC 1 cut(s) 687
LweI GCATC 2 cut(s) 257, 931
MaeI CTAG 3 cut(s) 158, 1001, 1035
MaeII ACGT 1 cut(s) 38
MaeIII GTNAC 3 cut(s) 52, 268, 320
MalI GATC 5 cut(s) 345, 355, 381, 714, 849
MboI GATC 5 cut(s) 343, 353, 379, 712, 847
MboII GAAGA 7 cut(s) 189, 296, 539, 580, 606, 725, 1075
MhlI GDGCHC 3 cut(s) 50, 165, 372
MluCI AATT 7 cut(s) 295, 416, 489, 519, 541, 555, 774
MlyI GAGTC 2 cut(s) 254, 655
MmeI TCCRAC 4 cut(s) 493, 601, 748, 790
MnlI CCTC 4 cut(s) 203, 328, 621, 891
Mph1103I ATGCAT 1 cut(s) 250
MroNI GCCGGC 1 cut(s) 1026
MseI TTAA 5 cut(s) 444, 560, 687, 707, 771
MslI CAYNNNNRTG 2 cut(s) 375, 381
MspI CCGG 1 cut(s) 1027
MspR9I CCNGG 2 cut(s) 673, 791
MvaI CCWGG 2 cut(s) 673, 791
MwoI GCNNNNNNNGC 1 cut(s) 786
NaeI GCCGGC 1 cut(s) 1028
NdeII GATC 5 cut(s) 343, 353, 379, 712, 847
NgoMIV GCCGGC 1 cut(s) 1026
NlaIII CATG 9 cut(s) 292, 351, 380, 386, 461, 580, 888, 949, 964
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 2 cut(s) 52, 320
NsiI ATGCAT 1 cut(s) 250
NspV TTCGAA 2 cut(s) 32, 151
PagI TCATGA 2 cut(s) 376, 457
PaqCI CACCTGC 1 cut(s) 406
PasI CCCWGGG 1 cut(s) 672
PdiI GCCGGC 1 cut(s) 1028
PfeI GAWTC 3 cut(s) 392, 745, 1006
PflMI CCANNNNNTGG 1 cut(s) 809
PkrI GCNGC 2 cut(s) 116, 702
PleI GAGTC 2 cut(s) 254, 654
PpsI GAGTC 2 cut(s) 254, 654
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 671, 789
PspGI CCWGG 2 cut(s) 671, 789
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 867
PstNI CAGNNNCTG 2 cut(s) 56, 786
RsaI GTAC 2 cut(s) 427, 761
RsaNI GTAC 2 cut(s) 426, 760
RseI CAYNNNNRTG 2 cut(s) 375, 381
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 5 cut(s) 444, 560, 687, 707, 771
SatI GCNGC 2 cut(s) 115, 701
Sau3AI GATC 5 cut(s) 343, 353, 379, 712, 847
Sau96I GGNCC 1 cut(s) 867
SchI GAGTC 2 cut(s) 254, 655
ScrFI CCNGG 2 cut(s) 673, 791
SduI GDGCHC 3 cut(s) 50, 165, 372
SetI ASST 9 cut(s) 41, 50, 210, 400, 693, 769, 820, 831, 1036
SfaNI GCATC 2 cut(s) 257, 931
SfcI CTRYAG 1 cut(s) 252
SfuI TTCGAA 2 cut(s) 32, 151
SmiMI CAYNNNNRTG 2 cut(s) 375, 381
SmlI CTYRAG 2 cut(s) 501, 740
SmoI CTYRAG 2 cut(s) 501, 740
Sse9I AATT 7 cut(s) 295, 416, 489, 519, 541, 555, 774
SsiI CCGC 2 cut(s) 115, 703
SspI AATATT 1 cut(s) 564
SspMI CTAG 3 cut(s) 158, 1001, 1035
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 671, 789
StyI CCWWGG 1 cut(s) 592
TaiI ACGT 1 cut(s) 41
TaqI TCGA 4 cut(s) 12, 32, 151, 476
TasI AATT 7 cut(s) 295, 416, 489, 519, 541, 555, 774
TatI WGTACW 1 cut(s) 759
TauI GCSGC 1 cut(s) 117
TfiI GAWTC 3 cut(s) 392, 745, 1006
Tru1I TTAA 5 cut(s) 444, 560, 687, 707, 771
Tru9I TTAA 5 cut(s) 444, 560, 687, 707, 771
TscAI CASTG 3 cut(s) 57, 574, 924
TseFI GTSAC 2 cut(s) 52, 320
TseI GCWGC 1 cut(s) 700
Tsp45I GTSAC 2 cut(s) 52, 320
TspDTI ATGAA 9 cut(s) 365, 375, 427, 524, 527, 528, 725, 986, 1075
TspRI CASTG 3 cut(s) 57, 574, 924
Van91I CCANNNNNTGG 1 cut(s) 809
XapI RAATTY 2 cut(s) 295, 489
XmiI GTMKAC 1 cut(s) 63
XspI CTAG 3 cut(s) 158, 1001, 1035
Zsp2I ATGCAT 1 cut(s) 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.