Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0002140

Physical Location & Seq

Genomic Coordinates Reverse (-)

695988 .. 701749

Gene Structure 5762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01140.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGTCGTGTGATACTGCAAAGGAAAATGCATCTGTAGTGGATTCATCTGTTACTGAAAGGAAAGAAGACATGGGGAATTCAGACGGGCCTGAGAGTTCAAGTCACAAAGGTACTGAGGGGGTTGATCCATCTAAGTCAGAAGAAGTTGGGCACTCTCATGACCGTGTTTGGGATTCACCTGCAAGAAAAAAGGGTAAATTGTATGGTACAAGATATTTCATCATTAAGAGTTTGTCACATGAGAATATCCAATTATCCATTGAGAAAGGAATTTGGGCTACTCAAGTGATGAACGAACCAATTTTGGAAGACGCTTTTCATAAATCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGATTCTTCCAAGGGTATGCACAAATGATGTCTGCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCCTGGGGGCGCAGTTTTAAGGTCAAATGGCTGCGATTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTAAATGAGTTCAAACCTGTTAAAATTAGCAGAGACTGTCAGGAGTTGTCTCCAGATGTTGGAGAAGCGCTCTGTGAGCTTCTTGATAGGCATAATGATCTGAATGGCATGAACAGTATTGACATGGATGATTTTCCTTCTAAAAGGCCCTGCGTAGAGCCTCCATGTTCAGTAGCGGAAGAAGAGTATAATATGCCCCCAGTGCATCTCTCATGGTCGCAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACATCAGGCTGAAACAAAGGGATTTCATTTTGCGAATCAGAAATGTAATGAAAGGCGGCCAGCTAGTGTTTTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATACCTAGAGGTCTATGGCAGAAGCAGGAAGGAACTGTATCAGCCTGGTTCTACATCACAGAAGTCATCCAGAAGTAAAGTGCATGAGGATGATATAAACTCAAGTTACGGAAGTAACCGCAGCTGCTCAAGGAAAAGAGCTCATCAGTCATCCCATAAGCAATCACAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

356

Amino Acids

40.46

Weight (kDa)

6.24

Isoelectric Point (pI)

59.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970
fragaria_vesca	FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140
malus_domestica	MD06G1069100.v1.1
prunus_persica	Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1
pyrus_communis	pycom06g06770
rosa_chinensis	RchiOBHm_Chr7g0199981 RchiOBHm_Chr7g0200101
rosa_laevigata	RLG00000003755
rosa_multiflora	Rmu_sc0006685.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256310
rosa_rugosa	Rorug07G0057600
rosa_samantha	Rh7AG182800 Rh7BG186000 Rh7CG192600 Rh7DG185800 Rh7DG187000
rosa_wichuraiana	Rw7G016030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	187
Acc36I	ACCTGC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	590
AciI	CCGC	3 cut(s)	707, 841, 1012
AclWI	GGATC	1 cut(s)	119
AcoI	YGGCCR	1 cut(s)	842
AcsI	RAATTY	2 cut(s)	76, 270
AfaI	GTAC	2 cut(s)	112, 208
AfeI	AGCGCT	1 cut(s)	600
AfiI	CCNNNNNNNGG	2 cut(s)	169, 590
AgsI	TTSAA	3 cut(s)	99, 544, 878
AjnI	CCWGG	2 cut(s)	452, 937
AjuI	GAANNNNNNNTTGG	2 cut(s)	498, 530
AluBI	AGCT	4 cut(s)	610, 848, 1017, 1034
AluI	AGCT	4 cut(s)	610, 848, 1017, 1034
Alw21I	GWGCWC	1 cut(s)	1036
Alw26I	GTCTC	3 cut(s)	408, 558, 585
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	567
Aor51HI	AGCGCT	1 cut(s)	600
AoxI	GGCC	3 cut(s)	86, 677, 842
ApeKI	GCWGC	3 cut(s)	481, 1014, 1017
ApoI	RAATTY	2 cut(s)	76, 270
AspLEI	GCGC	2 cut(s)	462, 601
AspS9I	GGNCC	2 cut(s)	86, 678
AsuHPI	GGTGA	1 cut(s)	168
BaeGI	GKGCMC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	1036
BbsI	GAAGAC	2 cut(s)	72, 315
Bbv12I	GWGCWC	1 cut(s)	1036
BbvI	GCAGC	3 cut(s)	468, 1004, 1026
BccI	CCATC	2 cut(s)	136, 399
BciT130I	CCWGG	2 cut(s)	454, 939
BcoDI	GTCTC	3 cut(s)	408, 558, 585
BfaI	CTAG	2 cut(s)	849, 899
BfmI	CTRYAG	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	482, 842, 1015, 1018
BlsI	GCNGC	4 cut(s)	483, 843, 1016, 1019
Bme1390I	CCNGG	2 cut(s)	454, 939
BmgT120I	GGNCC	2 cut(s)	86, 678
BmrFI	CCNGG	2 cut(s)	454, 939
BmrI	ACTGGG	1 cut(s)	725
BmsI	GCATC	2 cut(s)	38, 745
BmuI	ACTGGG	1 cut(s)	725
BpiI	GAAGAC	2 cut(s)	72, 315
BplI	GAGNNNNNCTC	2 cut(s)	585, 617
BpmI	CTGGAG	1 cut(s)	567
BpuEI	CTTGAG	4 cut(s)	267, 506, 979, 1006
BsaJI	CCNNGG	3 cut(s)	373, 452, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 590
Bse1I	ACTGG	1 cut(s)	731
BseBI	CCWGG	2 cut(s)	454, 939
BseDI	CCNNGG	3 cut(s)	373, 452, 453
BseGI	GGATG	6 cut(s)	410, 664, 871, 959, 988, 1043
BseLI	CCNNNNNNNGG	2 cut(s)	169, 590
BseMII	CTCAG	3 cut(s)	81, 105, 852
BseNI	ACTGG	1 cut(s)	731
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	3 cut(s)	468, 1004, 1026
BshFI	GGCC	3 cut(s)	88, 679, 844
BsiHKAI	GWGCWC	1 cut(s)	1036
BslI	CCNNNNNNNGG	2 cut(s)	169, 590
BsmAI	GTCTC	3 cut(s)	408, 558, 585
BsnI	GGCC	3 cut(s)	88, 679, 844
Bsp1286I	GDGCHC	2 cut(s)	153, 1036
Bsp143I	GATC	3 cut(s)	124, 493, 628
BspACI	CCGC	3 cut(s)	707, 841, 1012
BspANI	GGCC	3 cut(s)	88, 679, 844
BspCNI	CTCAG	3 cut(s)	82, 106, 853
BspHI	TCATGA	1 cut(s)	157
BspMI	ACCTGC	1 cut(s)	187
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	731
BssECI	CCNNGG	3 cut(s)	373, 452, 453
BssMI	GATC	3 cut(s)	124, 493, 628
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	454, 939
Bst4CI	ACNGT	4 cut(s)	164, 569, 647, 930
Bst6I	CTCTTC	2 cut(s)	519, 708
BstC8I	GCNNGC	1 cut(s)	846
BstDEI	CTNAG	4 cut(s)	90, 114, 132, 861
BstF5I	GGATG	6 cut(s)	410, 664, 871, 959, 988, 1043
BstH2I	RGCGCY	1 cut(s)	602
BstHHI	GCGC	2 cut(s)	462, 601
BstKTI	GATC	3 cut(s)	127, 496, 631
BstMAI	GTCTC	3 cut(s)	408, 558, 585
BstMBI	GATC	3 cut(s)	124, 493, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	607, 733
BstNI	CCWGG	2 cut(s)	454, 939
BstSCI	CCNGG	2 cut(s)	452, 937
BstSFI	CTRYAG	1 cut(s)	33
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	3 cut(s)	468, 1004, 1026
BstV2I	GAAGAC	2 cut(s)	72, 315
BsuRI	GGCC	3 cut(s)	88, 679, 844
BtsCI	GGATG	6 cut(s)	410, 664, 871, 959, 988, 1043
BtsIMutI	CAGTG	2 cut(s)	355, 738
BveI	ACCTGC	1 cut(s)	187
Cac8I	GCNNGC	1 cut(s)	846
CaiI	CAGNNNCTG	1 cut(s)	567
CciI	TCATGA	1 cut(s)	157
CfoI	GCGC	2 cut(s)	462, 601
Cfr13I	GGNCC	2 cut(s)	86, 678
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	111, 207
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviQI	GTAC	2 cut(s)	111, 207
DdeI	CTNAG	4 cut(s)	90, 114, 132, 861
DpnI	GATC	3 cut(s)	126, 495, 630
DpnII	GATC	3 cut(s)	124, 493, 628
EaeI	YGGCCR	1 cut(s)	842
Eam1104I	CTCTTC	2 cut(s)	519, 708
EarI	CTCTTC	2 cut(s)	519, 708
Ecl136II	GAGCTC	1 cut(s)	1034
Eco130I	CCWWGG	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	1036
Eco47III	AGCGCT	1 cut(s)	600
Eco53kI	GAGCTC	1 cut(s)	1034
EcoICRI	GAGCTC	1 cut(s)	1034
EcoO109I	RGGNCCY	1 cut(s)	678
EcoRI	GAATTC	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	452, 937
EcoT14I	CCWWGG	1 cut(s)	373
EcoT22I	ATGCAT	1 cut(s)	31
EcoT38I	GRGCYC	1 cut(s)	1036
ErhI	CCWWGG	1 cut(s)	373
Fnu4HI	GCNGC	4 cut(s)	482, 842, 1015, 1018
FokI	GGATG	6 cut(s)	417, 671, 878, 946, 995, 1030
FriOI	GRGCYC	1 cut(s)	1036
Fsp4HI	GCNGC	4 cut(s)	482, 842, 1015, 1018
FspBI	CTAG	2 cut(s)	849, 899
GlaI	GCGC	2 cut(s)	461, 600
GluI	GCNGC	4 cut(s)	482, 842, 1015, 1018
GsuI	CTGGAG	1 cut(s)	567
HaeII	RGCGCY	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	88, 679, 844
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	2 cut(s)	462, 601
Hin6I	GCGC	2 cut(s)	460, 599
HinP1I	GCGC	2 cut(s)	460, 599
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	6 cut(s)	41, 173, 366, 427, 526, 820
HphI	GGTGA	1 cut(s)	168
Hpy166II	GTNNAC	1 cut(s)	355
Hpy188I	TCNGA	4 cut(s)	82, 139, 633, 825
Hpy188III	TCNNGA	7 cut(s)	158, 523, 572, 584, 614, 875, 963
Hpy8I	GTNNAC	1 cut(s)	355
HpyAV	CCTTC	3 cut(s)	678, 780, 916
HpyCH4III	ACNGT	4 cut(s)	164, 569, 647, 930
HpyCH4V	TGCA	6 cut(s)	17, 29, 182, 383, 736, 976
HpyF10VI	GCNNNNNNNGC	2 cut(s)	607, 733
HpyF3I	CTNAG	4 cut(s)	90, 114, 132, 861
HspAI	GCGC	2 cut(s)	460, 599
Kzo9I	GATC	3 cut(s)	124, 493, 628
Lsp1109I	GCAGC	3 cut(s)	468, 1004, 1026
LweI	GCATC	2 cut(s)	38, 745
MaeI	CTAG	2 cut(s)	849, 899
MaeIII	GTNAC	5 cut(s)	49, 101, 234, 998, 1007
MalI	GATC	3 cut(s)	126, 495, 630
MboI	GATC	3 cut(s)	124, 493, 628
MboII	GAAGA	8 cut(s)	77, 152, 320, 361, 506, 722, 725, 902
MhlI	GDGCHC	2 cut(s)	153, 1036
MluCI	AATT	7 cut(s)	76, 197, 251, 270, 300, 336, 555
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	3 cut(s)	382, 529, 571
MnlI	CCTC	6 cut(s)	109, 402, 702, 856, 895, 973
Mph1103I	ATGCAT	1 cut(s)	31
MseI	TTAA	6 cut(s)	225, 341, 468, 488, 533, 552
MslI	CAYNNNNRTG	3 cut(s)	156, 162, 981
MspA1I	CMGCKG	1 cut(s)	1017
MspR9I	CCNGG	2 cut(s)	454, 939
MvaI	CCWGG	2 cut(s)	454, 939
MwoI	GCNNNNNNNGC	2 cut(s)	607, 733
NdeII	GATC	3 cut(s)	124, 493, 628
NmuCI	GTSAC	2 cut(s)	101, 234
NsiI	ATGCAT	1 cut(s)	31
PagI	TCATGA	1 cut(s)	157
PaqCI	CACCTGC	1 cut(s)	187
PasI	CCCWGGG	1 cut(s)	453
PfeI	GAWTC	5 cut(s)	41, 173, 366, 526, 820
PflMI	CCANNNNNTGG	1 cut(s)	590
PkrI	GCNGC	4 cut(s)	483, 843, 1016, 1019
PleI	GAGTC	1 cut(s)	435
PpsI	GAGTC	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	1036
Psp6I	CCWGG	2 cut(s)	452, 937
PspGI	CCWGG	2 cut(s)	452, 937
PspPI	GGNCC	2 cut(s)	86, 678
PstNI	CAGNNNCTG	1 cut(s)	567
PvuII	CAGCTG	1 cut(s)	1017
RsaI	GTAC	2 cut(s)	112, 208
RsaNI	GTAC	2 cut(s)	111, 207
RseI	CAYNNNNRTG	3 cut(s)	156, 162, 981
SacI	GAGCTC	1 cut(s)	1036
SaqAI	TTAA	6 cut(s)	225, 341, 468, 488, 533, 552
SatI	GCNGC	4 cut(s)	482, 842, 1015, 1018
Sau3AI	GATC	3 cut(s)	124, 493, 628
Sau96I	GGNCC	2 cut(s)	86, 678
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	454, 939
SduI	GDGCHC	2 cut(s)	153, 1036
SfaNI	GCATC	2 cut(s)	38, 745
SfcI	CTRYAG	1 cut(s)	33
SmiMI	CAYNNNNRTG	3 cut(s)	156, 162, 981
SmlI	CTYRAG	4 cut(s)	282, 521, 994, 1021
SmoI	CTYRAG	4 cut(s)	282, 521, 994, 1021
Sse9I	AATT	7 cut(s)	76, 197, 251, 270, 300, 336, 555
SsiI	CCGC	3 cut(s)	707, 841, 1012
SspI	AATATT	1 cut(s)	345
SspMI	CTAG	2 cut(s)	849, 899
SstI	GAGCTC	1 cut(s)	1036
StyD4I	CCNGG	2 cut(s)	452, 937
StyI	CCWWGG	1 cut(s)	373
TaaI	ACNGT	4 cut(s)	164, 569, 647, 930
TasI	AATT	7 cut(s)	76, 197, 251, 270, 300, 336, 555
TauI	GCSGC	1 cut(s)	844
TfiI	GAWTC	5 cut(s)	41, 173, 366, 526, 820
Tru1I	TTAA	6 cut(s)	225, 341, 468, 488, 533, 552
Tru9I	TTAA	6 cut(s)	225, 341, 468, 488, 533, 552
TscAI	CASTG	2 cut(s)	355, 738
TseFI	GTSAC	2 cut(s)	101, 234
TseI	GCWGC	3 cut(s)	481, 1014, 1017
Tsp45I	GTSAC	2 cut(s)	101, 234
TspDTI	ATGAA	9 cut(s)	33, 208, 305, 308, 506, 656, 800, 849, 903
TspGWI	ACGGA	1 cut(s)	1017
TspRI	CASTG	2 cut(s)	355, 738
Van91I	CCANNNNNTGG	1 cut(s)	590
XapI	RAATTY	2 cut(s)	76, 270
XspI	CTAG	2 cut(s)	849, 899
Zsp2I	ATGCAT	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.