Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006685.1

Orthogroup ID

OG0002140

Physical Location & Seq

Genomic Coordinates Reverse (-)

16796 .. 22709

Gene Structure 5914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006685.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ctgtcttctaaacaggttgatagagatatgtcgtgtgatactgcaaaggaaattgcatctgtagtggactcatctgttactgaaaggaaagaagacatggggaattcagatgagccagagagttcaagtcacaaagttcctgagggggttgatccatgtagatcagatgaagtggggcactctcatgatcatgttggggattcacctgcaaggaaaaagggtaaattgtatggtacacgatatttcatcattaagagtttgtctcatgagaatatccaactatcgattgagaaaggaatttgggctactcaagtgatgaatgaaccaattttggaagacgcttttcataattctggtaaagtaattttaatattcagtgtcaacatgagtggtttcttccaagggtatgcacaaatgatgtcttctgttggatggaggcgagacaatgtatggagtcaaggaactagtagaagtaatccctggggacgcagttttaaggtcaaatggctgcggttaaatgatctgcctttccaacaaactcttcatctcaagaatccattgaacgagtacaaacctgttaaaattagcagagactgccaggagttgtctccagatgttggagaagctctctgtgagcttcttgataggcataatgatctaaacggcctgaataggccctgtgtagagcctccatgttcggtaggggaaaaagagtatagtatgccagtgcatctctcgtggtcgcaaactcccatgctctatccttccatgctttatcaacaacagcctgaaacaaagagatttcatctagcgaatcagaaatctactgatagccggccagctagtgttctgactgaggatgattttcttgaaatgtcttatgaagaatatctggaggtctatggcaggagcaggaaggaactatatcagcctggttctagatcacagaagtcatccagaagtaaaatgcaggaggatgatttaaactcaagttacggaggtaaccgcatctgctcaaggaaaagagctcatcagtcatcccataagcaatcacaatgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

353

Amino Acids

40.26

Weight (kDa)

6.49

Isoelectric Point (pI)

60.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970
fragaria_vesca	FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140
malus_domestica	MD06G1069100.v1.1
prunus_persica	Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1
pyrus_communis	pycom06g06770
rosa_chinensis	RchiOBHm_Chr7g0199981 RchiOBHm_Chr7g0200101
rosa_laevigata	RLG00000003755
rosa_multiflora	Rmu_sc0006685.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256310
rosa_rugosa	Rorug07G0057600
rosa_samantha	Rh7AG182800 Rh7BG186000 Rh7CG192600 Rh7DG185800 Rh7DG187000
rosa_wichuraiana	Rw7G016030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	214
Acc36I	ACCTGC	1 cut(s)	214
AccB7I	CCANNNNNTGG	1 cut(s)	617
AciI	CCGC	2 cut(s)	511, 1006
AclWI	GGATC	1 cut(s)	146
AcoI	YGGCCR	1 cut(s)	836
AcsI	RAATTY	2 cut(s)	103, 297
AfaI	GTAC	2 cut(s)	235, 569
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	3 cut(s)	126, 562, 872
AhlI	ACTAGT	1 cut(s)	464
AjnI	CCWGG	3 cut(s)	479, 597, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	525, 557
AluBI	AGCT	4 cut(s)	626, 637, 842, 1028
AluI	AGCT	4 cut(s)	626, 637, 842, 1028
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	4 cut(s)	267, 435, 585, 612
AlwI	GGATC	1 cut(s)	146
AlwNI	CAGNNNCTG	1 cut(s)	594
AoxI	GGCC	3 cut(s)	664, 674, 836
ApeKI	GCWGC	1 cut(s)	508
ApoI	RAATTY	2 cut(s)	103, 297
AspS9I	GGNCC	1 cut(s)	675
AsuHPI	GGTGA	1 cut(s)	195
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	1030
BauI	CACGAG	1 cut(s)	736
BbsI	GAAGAC	3 cut(s)	99, 342, 414
Bbv12I	GWGCWC	1 cut(s)	1030
BbvI	GCAGC	1 cut(s)	495
BccI	CCATC	1 cut(s)	426
BceAI	ACGGC	1 cut(s)	679
BciT130I	CCWGG	3 cut(s)	481, 599, 933
BclI	TGATCA	1 cut(s)	187
BcoDI	GTCTC	4 cut(s)	267, 435, 585, 612
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	4 cut(s)	465, 809, 843, 939
BfmI	CTRYAG	1 cut(s)	60
BfuAI	ACCTGC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	509
BlsI	GCNGC	1 cut(s)	510
Bme1390I	CCNGG	3 cut(s)	481, 599, 933
BmgT120I	GGNCC	1 cut(s)	675
BmrFI	CCNGG	3 cut(s)	481, 599, 933
BmsI	GCATC	3 cut(s)	65, 739, 1017
BpiI	GAAGAC	3 cut(s)	99, 342, 414
BplI	GAGNNNNNCTC	4 cut(s)	247, 279, 612, 644
BpmI	CTGGAG	2 cut(s)	594, 914
BpuEI	CTTGAG	4 cut(s)	294, 533, 973, 1000
Bsa29I	ATCGAT	1 cut(s)	284
BsaJI	CCNNGG	3 cut(s)	400, 479, 480
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse118I	RCCGGY	1 cut(s)	834
Bse1I	ACTGG	1 cut(s)	725
Bse21I	CCTNAGG	1 cut(s)	141
BseBI	CCWGG	3 cut(s)	481, 599, 933
BseCI	ATCGAT	1 cut(s)	284
BseDI	CCNNGG	3 cut(s)	400, 479, 480
BseGI	GGATG	5 cut(s)	437, 865, 953, 982, 1037
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMII	CTCAG	2 cut(s)	132, 846
BseNI	ACTGG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	495
BshFI	GGCC	3 cut(s)	666, 676, 838
BshVI	ATCGAT	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiSI	CCGG	1 cut(s)	835
BslFI	GGGAC	1 cut(s)	498
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	4 cut(s)	267, 435, 585, 612
BsmFI	GGGAC	1 cut(s)	498
BsnI	GGCC	3 cut(s)	666, 676, 838
Bsp1286I	GDGCHC	2 cut(s)	180, 1030
Bsp143I	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
BspACI	CCGC	2 cut(s)	511, 1006
BspANI	GGCC	3 cut(s)	666, 676, 838
BspCNI	CTCAG	2 cut(s)	133, 847
BspDI	ATCGAT	1 cut(s)	284
BspHI	TCATGA	2 cut(s)	184, 265
BspMI	ACCTGC	1 cut(s)	214
BspPI	GGATC	1 cut(s)	146
BsrFI	RCCGGY	1 cut(s)	834
BsrI	ACTGG	1 cut(s)	725
BssAI	RCCGGY	1 cut(s)	834
BssECI	CCNNGG	3 cut(s)	400, 479, 480
BssMI	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
BssSI	CACGAG	1 cut(s)	736
BssT1I	CCWWGG	1 cut(s)	400
Bst2BI	CACGAG	1 cut(s)	736
Bst2UI	CCWGG	3 cut(s)	481, 599, 933
Bst6I	CTCTTC	1 cut(s)	546
BstAPI	GCANNNNNTGC	1 cut(s)	594
BstC8I	GCNNGC	2 cut(s)	836, 840
BstDEI	CTNAG	2 cut(s)	141, 855
BstEII	GGTNACC	1 cut(s)	1001
BstF5I	GGATG	5 cut(s)	437, 865, 953, 982, 1037
BstKTI	GATC	6 cut(s)	154, 164, 190, 523, 658, 944
BstMAI	GTCTC	4 cut(s)	267, 435, 585, 612
BstMBI	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
BstMWI	GCNNNNNNNGC	1 cut(s)	594
BstNI	CCWGG	3 cut(s)	481, 599, 933
BstPI	GGTNACC	1 cut(s)	1001
BstSCI	CCNGG	3 cut(s)	479, 597, 931
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	180
BstV1I	GCAGC	1 cut(s)	495
BstV2I	GAAGAC	3 cut(s)	99, 342, 414
Bsu15I	ATCGAT	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	3 cut(s)	666, 676, 838
BsuTUI	ATCGAT	1 cut(s)	284
BtsCI	GGATG	5 cut(s)	437, 865, 953, 982, 1037
BtsIMutI	CAGTG	2 cut(s)	382, 732
BveI	ACCTGC	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	836, 840
CaiI	CAGNNNCTG	1 cut(s)	594
CciI	TCATGA	2 cut(s)	184, 265
Cfr10I	RCCGGY	1 cut(s)	834
Cfr13I	GGNCC	1 cut(s)	675
ClaI	ATCGAT	1 cut(s)	284
CseI	GACGC	2 cut(s)	347, 495
Csp6I	GTAC	2 cut(s)	234, 568
CspCI	CAANNNNNGTGG	2 cut(s)	370, 405
CviAII	CATG	9 cut(s)	97, 156, 185, 191, 266, 385, 693, 754, 769
CviQI	GTAC	2 cut(s)	234, 568
DdeI	CTNAG	2 cut(s)	141, 855
DpnI	GATC	6 cut(s)	153, 163, 189, 522, 657, 943
DpnII	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
DraI	TTTAAA	1 cut(s)	984
EaeI	YGGCCR	1 cut(s)	836
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Ecl136II	GAGCTC	1 cut(s)	1028
Eco130I	CCWWGG	1 cut(s)	400
Eco24I	GRGCYC	1 cut(s)	1030
Eco53kI	GAGCTC	1 cut(s)	1028
Eco81I	CCTNAGG	1 cut(s)	141
Eco91I	GGTNACC	1 cut(s)	1001
EcoICRI	GAGCTC	1 cut(s)	1028
EcoO109I	RGGNCCY	1 cut(s)	675
EcoO65I	GGTNACC	1 cut(s)	1001
EcoRI	GAATTC	1 cut(s)	103
EcoRII	CCWGG	3 cut(s)	479, 597, 931
EcoT14I	CCWWGG	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	1030
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	9 cut(s)	100, 159, 188, 194, 269, 388, 696, 757, 772
FaqI	GGGAC	1 cut(s)	498
FatI	CATG	9 cut(s)	96, 155, 184, 190, 265, 384, 692, 753, 768
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	1 cut(s)	509
FokI	GGATG	5 cut(s)	444, 872, 940, 989, 1024
FriOI	GRGCYC	1 cut(s)	1030
Fsp4HI	GCNGC	1 cut(s)	509
FspBI	CTAG	4 cut(s)	465, 809, 843, 939
GluI	GCNGC	1 cut(s)	509
GsuI	CTGGAG	2 cut(s)	594, 914
HaeIII	GGCC	3 cut(s)	666, 676, 838
HapII	CCGG	1 cut(s)	835
HgaI	GACGC	2 cut(s)	347, 495
Hin1II	CATG	9 cut(s)	100, 159, 188, 194, 269, 388, 696, 757, 772
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	5 cut(s)	68, 200, 454, 553, 814
HpaII	CCGG	1 cut(s)	835
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	67, 236, 382
Hpy188I	TCNGA	4 cut(s)	109, 166, 819, 852
Hpy8I	GTNNAC	3 cut(s)	67, 236, 382
HpyAV	CCTTC	2 cut(s)	774, 910
HpyCH4V	TGCA	6 cut(s)	44, 56, 209, 410, 730, 970
HpyF10VI	GCNNNNNNNGC	1 cut(s)	594
HpyF3I	CTNAG	2 cut(s)	141, 855
Hsp92II	CATG	9 cut(s)	100, 159, 188, 194, 269, 388, 696, 757, 772
KroI	GCCGGC	1 cut(s)	834
KroNI	GCCGGC	1 cut(s)	836
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
LmnI	GCTCC	1 cut(s)	909
Lsp1109I	GCAGC	1 cut(s)	495
LweI	GCATC	3 cut(s)	65, 739, 1017
MaeI	CTAG	4 cut(s)	465, 809, 843, 939
MaeIII	GTNAC	4 cut(s)	76, 128, 992, 1001
MalI	GATC	6 cut(s)	153, 163, 189, 522, 657, 943
MboI	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
MboII	GAAGA	6 cut(s)	104, 347, 388, 414, 533, 896
MhlI	GDGCHC	2 cut(s)	180, 1030
MluCI	AATT	8 cut(s)	51, 103, 224, 297, 327, 349, 363, 582
MlyI	GAGTC	2 cut(s)	62, 463
MmeI	TCCRAC	4 cut(s)	301, 409, 556, 598
MnlI	CCTC	7 cut(s)	136, 429, 699, 850, 889, 967, 992
MroNI	GCCGGC	1 cut(s)	834
MseI	TTAA	6 cut(s)	252, 368, 495, 515, 579, 983
MslI	CAYNNNNRTG	2 cut(s)	183, 189
MspI	CCGG	1 cut(s)	835
MspR9I	CCNGG	3 cut(s)	481, 599, 933
MvaI	CCWGG	3 cut(s)	481, 599, 933
MwoI	GCNNNNNNNGC	1 cut(s)	594
NaeI	GCCGGC	1 cut(s)	836
NdeII	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
NgoMIV	GCCGGC	1 cut(s)	834
NlaIII	CATG	9 cut(s)	100, 159, 188, 194, 269, 388, 696, 757, 772
NmuCI	GTSAC	1 cut(s)	128
PagI	TCATGA	2 cut(s)	184, 265
PaqCI	CACCTGC	1 cut(s)	214
PasI	CCCWGGG	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	836
PfeI	GAWTC	3 cut(s)	200, 553, 814
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	510
PleI	GAGTC	2 cut(s)	62, 462
PpsI	GAGTC	2 cut(s)	62, 462
Psp124BI	GAGCTC	1 cut(s)	1030
Psp6I	CCWGG	3 cut(s)	479, 597, 931
PspEI	GGTNACC	1 cut(s)	1001
PspGI	CCWGG	3 cut(s)	479, 597, 931
PspPI	GGNCC	1 cut(s)	675
PstNI	CAGNNNCTG	1 cut(s)	594
RsaI	GTAC	2 cut(s)	235, 569
RsaNI	GTAC	2 cut(s)	234, 568
RseI	CAYNNNNRTG	2 cut(s)	183, 189
SacI	GAGCTC	1 cut(s)	1030
SaqAI	TTAA	6 cut(s)	252, 368, 495, 515, 579, 983
SatI	GCNGC	1 cut(s)	509
Sau3AI	GATC	6 cut(s)	151, 161, 187, 520, 655, 941
Sau96I	GGNCC	1 cut(s)	675
SchI	GAGTC	2 cut(s)	62, 463
ScrFI	CCNGG	3 cut(s)	481, 599, 933
SduI	GDGCHC	2 cut(s)	180, 1030
SfaNI	GCATC	3 cut(s)	65, 739, 1017
SfcI	CTRYAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	183, 189
SmlI	CTYRAG	4 cut(s)	309, 548, 988, 1015
SmoI	CTYRAG	4 cut(s)	309, 548, 988, 1015
SpeI	ACTAGT	1 cut(s)	464
Sse9I	AATT	8 cut(s)	51, 103, 224, 297, 327, 349, 363, 582
SsiI	CCGC	2 cut(s)	511, 1006
SspI	AATATT	1 cut(s)	372
SspMI	CTAG	4 cut(s)	465, 809, 843, 939
SstI	GAGCTC	1 cut(s)	1030
StyD4I	CCNGG	3 cut(s)	479, 597, 931
StyI	CCWWGG	1 cut(s)	400
TaqI	TCGA	1 cut(s)	284
TasI	AATT	8 cut(s)	51, 103, 224, 297, 327, 349, 363, 582
TatI	WGTACW	1 cut(s)	567
TfiI	GAWTC	3 cut(s)	200, 553, 814
Tru1I	TTAA	6 cut(s)	252, 368, 495, 515, 579, 983
Tru9I	TTAA	6 cut(s)	252, 368, 495, 515, 579, 983
TscAI	CASTG	2 cut(s)	382, 732
TseFI	GTSAC	1 cut(s)	128
TseI	GCWGC	1 cut(s)	508
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	8 cut(s)	183, 235, 332, 335, 336, 533, 794, 897
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	2 cut(s)	382, 732
Van91I	CCANNNNNTGG	1 cut(s)	617
XapI	RAATTY	2 cut(s)	103, 297
XbaI	TCTAGA	1 cut(s)	938
XspI	CTAG	4 cut(s)	465, 809, 843, 939

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.