Rh7DG187000

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002140
Physical Location & Seq
Forward (+)
17337363 .. 17346992
9630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG187000.1

Sequence Viewer

Length: 738 bp
ATGAAGACTGATGTTTTCTCTCTAATAGATCTATGGGATGTGTTGGATGTAAATGTCAACATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAACTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATGATGATCTAAACGGCCTGAATAGGCCCTGCGTAGAGCCTCCATGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCACAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATATCTGGAGGTCTATGGCAGAAGCAGGAAGGAACTATATCAGCCTGGTTCTAGATCACAGAAGTCATCCAGAAGTAAAATGCAGGAGGATGATTTAAACTCAAGTTACGGAGGTAACCTCATCTGCTCAAGGAAAAGAGCTCATCAGTCATCCCATAAGCAATCACAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

245

Amino Acids

28.43

Weight (kDa)

6.6

Isoelectric Point (pI)

64.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 18 - 106 3e-27 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 293
AciI CCGC 1 cut(s) 187
AcoI YGGCCR 1 cut(s) 512
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 238, 548
AhlI ACTAGT 1 cut(s) 140
AjnI CCWGG 3 cut(s) 155, 273, 607
AjuI GAANNNNNNNTTGG 2 cut(s) 201, 233
AluBI AGCT 4 cut(s) 302, 313, 518, 704
AluI AGCT 4 cut(s) 302, 313, 518, 704
Alw21I GWGCWC 1 cut(s) 706
Alw26I GTCTC 3 cut(s) 111, 261, 288
AlwNI CAGNNNCTG 1 cut(s) 270
AoxI GGCC 3 cut(s) 340, 350, 512
ApeKI GCWGC 1 cut(s) 184
AspS9I GGNCC 1 cut(s) 351
BanII GRGCYC 1 cut(s) 706
BauI CACGAG 1 cut(s) 412
BbsI GAAGAC 2 cut(s) 11, 90
Bbv12I GWGCWC 1 cut(s) 706
BbvI GCAGC 1 cut(s) 171
BccI CCATC 1 cut(s) 102
BceAI ACGGC 1 cut(s) 355
BciT130I CCWGG 3 cut(s) 157, 275, 609
BcoDI GTCTC 3 cut(s) 111, 261, 288
BcuI ACTAGT 1 cut(s) 140
BfaI CTAG 4 cut(s) 141, 485, 519, 615
BglII AGATCT 1 cut(s) 28
BisI GCNGC 1 cut(s) 185
BlsI GCNGC 1 cut(s) 186
Bme1390I CCNGG 3 cut(s) 157, 275, 609
BmgT120I GGNCC 1 cut(s) 351
BmrFI CCNGG 3 cut(s) 157, 275, 609
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 11, 90
BplI GAGNNNNNCTC 4 cut(s) 288, 320, 666, 698
BpmI CTGGAG 2 cut(s) 270, 590
BpuEI CTTGAG 3 cut(s) 209, 649, 676
BsaJI CCNNGG 3 cut(s) 76, 155, 156
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 510
Bse1I ACTGG 1 cut(s) 401
BseBI CCWGG 3 cut(s) 157, 275, 609
BseDI CCNNGG 3 cut(s) 76, 155, 156
BseGI GGATG 7 cut(s) 43, 52, 113, 541, 629, 658, 713
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMII CTCAG 1 cut(s) 522
BseNI ACTGG 1 cut(s) 401
BseXI GCAGC 1 cut(s) 171
BshFI GGCC 3 cut(s) 342, 352, 514
BsiHKAI GWGCWC 1 cut(s) 706
BsiSI CCGG 1 cut(s) 511
BslFI GGGAC 1 cut(s) 174
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 3 cut(s) 111, 261, 288
BsmFI GGGAC 1 cut(s) 174
BsnI GGCC 3 cut(s) 342, 352, 514
Bsp1286I GDGCHC 1 cut(s) 706
Bsp143I GATC 4 cut(s) 28, 196, 331, 617
BspACI CCGC 1 cut(s) 187
BspANI GGCC 3 cut(s) 342, 352, 514
BspCNI CTCAG 1 cut(s) 523
BsrFI RCCGGY 1 cut(s) 510
BsrI ACTGG 1 cut(s) 401
BssAI RCCGGY 1 cut(s) 510
BssECI CCNNGG 3 cut(s) 76, 155, 156
BssMI GATC 4 cut(s) 28, 196, 331, 617
BssSI CACGAG 1 cut(s) 412
BssT1I CCWWGG 1 cut(s) 76
Bst2BI CACGAG 1 cut(s) 412
Bst2UI CCWGG 3 cut(s) 157, 275, 609
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 512, 516
BstDEI CTNAG 1 cut(s) 531
BstEII GGTNACC 1 cut(s) 677
BstF5I GGATG 7 cut(s) 43, 52, 113, 541, 629, 658, 713
BstKTI GATC 4 cut(s) 31, 199, 334, 620
BstMAI GTCTC 3 cut(s) 111, 261, 288
BstMBI GATC 4 cut(s) 28, 196, 331, 617
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 3 cut(s) 157, 275, 609
BstPI GGTNACC 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 155, 273, 607
BstV1I GCAGC 1 cut(s) 171
BstV2I GAAGAC 2 cut(s) 11, 90
BstX2I RGATCY 1 cut(s) 28
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 3 cut(s) 342, 352, 514
BtsCI GGATG 7 cut(s) 43, 52, 113, 541, 629, 658, 713
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 512, 516
CaiI CAGNNNCTG 1 cut(s) 270
Cfr10I RCCGGY 1 cut(s) 510
Cfr13I GGNCC 1 cut(s) 351
CseI GACGC 1 cut(s) 171
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 5 cut(s) 61, 326, 369, 430, 445
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 531
DpnI GATC 4 cut(s) 30, 198, 333, 619
DpnII GATC 4 cut(s) 28, 196, 331, 617
DraI TTTAAA 1 cut(s) 660
EaeI YGGCCR 1 cut(s) 512
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 706
Eco53kI GAGCTC 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 677
EcoICRI GAGCTC 1 cut(s) 704
EcoO109I RGGNCCY 1 cut(s) 351
EcoO65I GGTNACC 1 cut(s) 677
EcoRII CCWGG 3 cut(s) 155, 273, 607
EcoT14I CCWWGG 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 1 cut(s) 76
FaeI CATG 5 cut(s) 64, 329, 372, 433, 448
FaqI GGGAC 1 cut(s) 174
FatI CATG 5 cut(s) 60, 325, 368, 429, 444
Fnu4HI GCNGC 1 cut(s) 185
FokI GGATG 7 cut(s) 50, 59, 120, 548, 616, 665, 700
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 1 cut(s) 185
FspBI CTAG 4 cut(s) 141, 485, 519, 615
GluI GCNGC 1 cut(s) 185
GsuI CTGGAG 2 cut(s) 270, 590
HaeIII GGCC 3 cut(s) 342, 352, 514
HapII CCGG 1 cut(s) 511
HgaI GACGC 1 cut(s) 171
Hin1II CATG 5 cut(s) 64, 329, 372, 433, 448
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 3 cut(s) 130, 229, 490
HpaII CCGG 1 cut(s) 511
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 495, 528
Hpy188III TCNNGA 7 cut(s) 226, 287, 317, 545, 569, 615, 633
Hpy8I GTNNAC 1 cut(s) 58
HpyAV CCTTC 2 cut(s) 450, 586
HpyCH4V TGCA 3 cut(s) 86, 406, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 5 cut(s) 64, 329, 372, 433, 448
KroI GCCGGC 1 cut(s) 510
KroNI GCCGGC 1 cut(s) 512
Kzo9I GATC 4 cut(s) 28, 196, 331, 617
Lsp1109I GCAGC 1 cut(s) 171
LweI GCATC 1 cut(s) 415
MaeI CTAG 4 cut(s) 141, 485, 519, 615
MaeIII GTNAC 3 cut(s) 417, 668, 677
MalI GATC 4 cut(s) 30, 198, 333, 619
MboI GATC 4 cut(s) 28, 196, 331, 617
MboII GAAGA 5 cut(s) 16, 64, 90, 209, 572
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 1 cut(s) 706
MluCI AATT 1 cut(s) 258
MlyI GAGTC 1 cut(s) 139
MmeI TCCRAC 4 cut(s) 24, 85, 232, 274
MnlI CCTC 7 cut(s) 105, 375, 526, 565, 643, 668, 692
MroNI GCCGGC 1 cut(s) 510
MseI TTAA 4 cut(s) 171, 191, 255, 659
MspI CCGG 1 cut(s) 511
MspR9I CCNGG 3 cut(s) 157, 275, 609
MvaI CCWGG 3 cut(s) 157, 275, 609
MwoI GCNNNNNNNGC 1 cut(s) 270
NaeI GCCGGC 1 cut(s) 512
NdeII GATC 4 cut(s) 28, 196, 331, 617
NgoMIV GCCGGC 1 cut(s) 510
NlaIII CATG 5 cut(s) 64, 329, 372, 433, 448
NmuCI GTSAC 1 cut(s) 417
PasI CCCWGGG 1 cut(s) 156
PdiI GCCGGC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 229, 490
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 1 cut(s) 186
PleI GAGTC 1 cut(s) 138
PpsI GAGTC 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 706
Psp6I CCWGG 3 cut(s) 155, 273, 607
PspEI GGTNACC 1 cut(s) 677
PspGI CCWGG 3 cut(s) 155, 273, 607
PspPI GGNCC 1 cut(s) 351
PstNI CAGNNNCTG 1 cut(s) 270
PsuI RGATCY 1 cut(s) 28
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 4 cut(s) 171, 191, 255, 659
SatI GCNGC 1 cut(s) 185
Sau3AI GATC 4 cut(s) 28, 196, 331, 617
Sau96I GGNCC 1 cut(s) 351
SchI GAGTC 1 cut(s) 139
ScrFI CCNGG 3 cut(s) 157, 275, 609
SduI GDGCHC 1 cut(s) 706
SetI ASST 9 cut(s) 177, 253, 304, 315, 520, 576, 679, 684, 706
SfaNI GCATC 1 cut(s) 415
SmlI CTYRAG 3 cut(s) 224, 664, 691
SmoI CTYRAG 3 cut(s) 224, 664, 691
SpeI ACTAGT 1 cut(s) 140
Sse9I AATT 1 cut(s) 258
SsiI CCGC 1 cut(s) 187
SspMI CTAG 4 cut(s) 141, 485, 519, 615
SstI GAGCTC 1 cut(s) 706
StyD4I CCNGG 3 cut(s) 155, 273, 607
StyI CCWWGG 1 cut(s) 76
TasI AATT 1 cut(s) 258
TatI WGTACW 1 cut(s) 243
TfiI GAWTC 2 cut(s) 229, 490
Tru1I TTAA 4 cut(s) 171, 191, 255, 659
Tru9I TTAA 4 cut(s) 171, 191, 255, 659
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 417
TseI GCWGC 1 cut(s) 184
Tsp45I GTSAC 1 cut(s) 417
TspDTI ATGAA 4 cut(s) 17, 209, 470, 573
TspGWI ACGGA 1 cut(s) 687
TspRI CASTG 1 cut(s) 408
Van91I CCANNNNNTGG 1 cut(s) 293
XbaI TCTAGA 1 cut(s) 614
XspI CTAG 4 cut(s) 141, 485, 519, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.