RchiOBHm_Chr7g0199981

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002140
Physical Location & Seq
Forward (+)
17933177 .. 17938310
5134 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17897

Sequence Viewer

Length: 1035 bp
ATGTCGTGTGATACTGCAAAGGAAATTGCATCTGTAGTGGACTCATCTGTTACTGAAAGGAAAGAAGACATGGGGAATTCAGATGAGCCAGAGAGTTCAAGTCACAAAGTTCCTGAGGGGGTTGAACCATGTAGATCAGATGAAGTGGGGCACTCTCATGATCATGTTGGGGATTCACCTGCAAGGAAAAAGGGTAAATTGTATGGTACACGATATTTCATCATTAAGAGTTTGTCTCATGAGAATATCCAACTATCGATTGAGAAAGGAATTTGGGCTACCCAAGTGATGAATGAACCAATTTTGGAAGACGCTTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAACTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATAATGATCTAAACGGCCTGAATAGGCCCTGCGTAGAGCCTCCGTGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCGCAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATATCTGGAGGTCTATGGCAGGAGCAGGAAGGAACTATATCAGCCTGGTTCTAGATCACAGAAGTCATCCAGAAGTAAAATGCAGGAGGATGATTTAAACTCAAGTTACGGAGGTAACCTCATCTGCTCAAGGAAAAGAGCTCATCAGTCATCCCATAAGCAATCACAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

344

Amino Acids

39.23

Weight (kDa)

6.32

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 70 - 205 4.1e-50 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 590
AciI CCGC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 809
AcsI RAATTY 2 cut(s) 76, 270
AfaI GTAC 2 cut(s) 208, 542
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 4 cut(s) 99, 125, 535, 845
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 3 cut(s) 452, 570, 904
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 4 cut(s) 599, 610, 815, 1001
AluI AGCT 4 cut(s) 599, 610, 815, 1001
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 4 cut(s) 240, 408, 558, 585
AlwNI CAGNNNCTG 1 cut(s) 567
AoxI GGCC 3 cut(s) 637, 647, 809
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 76, 270
AspS9I GGNCC 1 cut(s) 648
AsuHPI GGTGA 1 cut(s) 168
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 1003
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 72, 315, 387
Bbv12I GWGCWC 1 cut(s) 1003
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 399
BceAI ACGGC 1 cut(s) 652
BciT130I CCWGG 3 cut(s) 454, 572, 906
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 4 cut(s) 240, 408, 558, 585
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 4 cut(s) 438, 782, 816, 912
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 3 cut(s) 454, 572, 906
BmgT120I GGNCC 1 cut(s) 648
BmrFI CCNGG 3 cut(s) 454, 572, 906
BmsI GCATC 2 cut(s) 38, 712
BpiI GAAGAC 3 cut(s) 72, 315, 387
BplI GAGNNNNNCTC 6 cut(s) 220, 252, 585, 617, 963, 995
BpmI CTGGAG 2 cut(s) 567, 887
BpuEI CTTGAG 3 cut(s) 506, 946, 973
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 3 cut(s) 373, 452, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 1 cut(s) 698
Bse21I CCTNAGG 1 cut(s) 114
BseBI CCWGG 3 cut(s) 454, 572, 906
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 3 cut(s) 373, 452, 453
BseGI GGATG 5 cut(s) 410, 838, 926, 955, 1010
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 105, 819
BseNI ACTGG 1 cut(s) 698
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 1 cut(s) 468
BshFI GGCC 3 cut(s) 639, 649, 811
BshVI ATCGAT 1 cut(s) 257
BsiHKAI GWGCWC 1 cut(s) 1003
BsiSI CCGG 1 cut(s) 808
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 4 cut(s) 240, 408, 558, 585
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 3 cut(s) 639, 649, 811
Bsp1286I GDGCHC 2 cut(s) 153, 1003
Bsp143I GATC 5 cut(s) 134, 160, 493, 628, 914
BspACI CCGC 1 cut(s) 484
BspANI GGCC 3 cut(s) 639, 649, 811
BspCNI CTCAG 2 cut(s) 106, 820
BspDI ATCGAT 1 cut(s) 257
BspHI TCATGA 2 cut(s) 157, 238
BspMI ACCTGC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 1 cut(s) 807
BssECI CCNNGG 3 cut(s) 373, 452, 453
BssMI GATC 5 cut(s) 134, 160, 493, 628, 914
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 3 cut(s) 454, 572, 906
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 809, 813
BstDEI CTNAG 2 cut(s) 114, 828
BstEII GGTNACC 1 cut(s) 974
BstF5I GGATG 5 cut(s) 410, 838, 926, 955, 1010
BstKTI GATC 5 cut(s) 137, 163, 496, 631, 917
BstMAI GTCTC 4 cut(s) 240, 408, 558, 585
BstMBI GATC 5 cut(s) 134, 160, 493, 628, 914
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 3 cut(s) 454, 572, 906
BstPI GGTNACC 1 cut(s) 974
BstSCI CCNGG 3 cut(s) 452, 570, 904
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 468
BstV2I GAAGAC 3 cut(s) 72, 315, 387
Bsu15I ATCGAT 1 cut(s) 257
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 3 cut(s) 639, 649, 811
BsuTUI ATCGAT 1 cut(s) 257
BtsCI GGATG 5 cut(s) 410, 838, 926, 955, 1010
BtsIMutI CAGTG 2 cut(s) 355, 705
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 809, 813
CaiI CAGNNNCTG 1 cut(s) 567
CciI TCATGA 2 cut(s) 157, 238
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 648
ClaI ATCGAT 1 cut(s) 257
CseI GACGC 2 cut(s) 320, 468
Csp6I GTAC 2 cut(s) 207, 541
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 8 cut(s) 70, 129, 158, 164, 239, 358, 727, 742
CviQI GTAC 2 cut(s) 207, 541
DdeI CTNAG 2 cut(s) 114, 828
DpnI GATC 5 cut(s) 136, 162, 495, 630, 916
DpnII GATC 5 cut(s) 134, 160, 493, 628, 914
DraI TTTAAA 1 cut(s) 957
EaeI YGGCCR 1 cut(s) 809
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Ecl136II GAGCTC 1 cut(s) 1001
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 1003
Eco53kI GAGCTC 1 cut(s) 1001
Eco81I CCTNAGG 1 cut(s) 114
Eco91I GGTNACC 1 cut(s) 974
EcoICRI GAGCTC 1 cut(s) 1001
EcoO109I RGGNCCY 1 cut(s) 648
EcoO65I GGTNACC 1 cut(s) 974
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 3 cut(s) 452, 570, 904
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 1003
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 8 cut(s) 73, 132, 161, 167, 242, 361, 730, 745
FaqI GGGAC 1 cut(s) 471
FatI CATG 8 cut(s) 69, 128, 157, 163, 238, 357, 726, 741
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 5 cut(s) 417, 845, 913, 962, 997
FriOI GRGCYC 1 cut(s) 1003
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 4 cut(s) 438, 782, 816, 912
GluI GCNGC 1 cut(s) 482
GsuI CTGGAG 2 cut(s) 567, 887
HaeIII GGCC 3 cut(s) 639, 649, 811
HapII CCGG 1 cut(s) 808
HgaI GACGC 2 cut(s) 320, 468
Hin1II CATG 8 cut(s) 73, 132, 161, 167, 242, 361, 730, 745
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 5 cut(s) 41, 173, 427, 526, 787
HpaII CCGG 1 cut(s) 808
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 3 cut(s) 40, 209, 355
Hpy188I TCNGA 4 cut(s) 82, 139, 792, 825
Hpy8I GTNNAC 3 cut(s) 40, 209, 355
HpyAV CCTTC 2 cut(s) 747, 883
HpyCH4V TGCA 6 cut(s) 17, 29, 182, 383, 703, 943
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 2 cut(s) 114, 828
Hsp92II CATG 8 cut(s) 73, 132, 161, 167, 242, 361, 730, 745
KroI GCCGGC 1 cut(s) 807
KroNI GCCGGC 1 cut(s) 809
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 134, 160, 493, 628, 914
LmnI GCTCC 1 cut(s) 882
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 38, 712
MaeI CTAG 4 cut(s) 438, 782, 816, 912
MaeIII GTNAC 4 cut(s) 49, 101, 965, 974
MalI GATC 5 cut(s) 136, 162, 495, 630, 916
MboI GATC 5 cut(s) 134, 160, 493, 628, 914
MboII GAAGA 6 cut(s) 77, 320, 361, 387, 506, 869
MhlI GDGCHC 2 cut(s) 153, 1003
MluCI AATT 8 cut(s) 24, 76, 197, 270, 300, 322, 336, 555
MlyI GAGTC 2 cut(s) 35, 436
MmeI TCCRAC 4 cut(s) 274, 382, 529, 571
MnlI CCTC 8 cut(s) 109, 402, 672, 823, 862, 940, 965, 989
MroNI GCCGGC 1 cut(s) 807
MseI TTAA 6 cut(s) 225, 341, 468, 488, 552, 956
MslI CAYNNNNRTG 2 cut(s) 156, 162
MspI CCGG 1 cut(s) 808
MspR9I CCNGG 3 cut(s) 454, 572, 906
MvaI CCWGG 3 cut(s) 454, 572, 906
MwoI GCNNNNNNNGC 1 cut(s) 567
NaeI GCCGGC 1 cut(s) 809
NdeII GATC 5 cut(s) 134, 160, 493, 628, 914
NgoMIV GCCGGC 1 cut(s) 807
NlaIII CATG 8 cut(s) 73, 132, 161, 167, 242, 361, 730, 745
NmuCI GTSAC 1 cut(s) 101
PagI TCATGA 2 cut(s) 157, 238
PaqCI CACCTGC 1 cut(s) 187
PasI CCCWGGG 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 809
PfeI GAWTC 3 cut(s) 173, 526, 787
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 2 cut(s) 35, 435
PpsI GAGTC 2 cut(s) 35, 435
Psp124BI GAGCTC 1 cut(s) 1003
Psp6I CCWGG 3 cut(s) 452, 570, 904
PspEI GGTNACC 1 cut(s) 974
PspGI CCWGG 3 cut(s) 452, 570, 904
PspPI GGNCC 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 208, 542
RsaNI GTAC 2 cut(s) 207, 541
RseI CAYNNNNRTG 2 cut(s) 156, 162
SacI GAGCTC 1 cut(s) 1003
SaqAI TTAA 6 cut(s) 225, 341, 468, 488, 552, 956
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 5 cut(s) 134, 160, 493, 628, 914
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 2 cut(s) 35, 436
ScrFI CCNGG 3 cut(s) 454, 572, 906
SduI GDGCHC 2 cut(s) 153, 1003
SfaNI GCATC 2 cut(s) 38, 712
SfcI CTRYAG 1 cut(s) 33
SmiMI CAYNNNNRTG 2 cut(s) 156, 162
SmlI CTYRAG 3 cut(s) 521, 961, 988
SmoI CTYRAG 3 cut(s) 521, 961, 988
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 8 cut(s) 24, 76, 197, 270, 300, 322, 336, 555
SsiI CCGC 1 cut(s) 484
SspI AATATT 1 cut(s) 345
SspMI CTAG 4 cut(s) 438, 782, 816, 912
SstI GAGCTC 1 cut(s) 1003
StyD4I CCNGG 3 cut(s) 452, 570, 904
StyI CCWWGG 1 cut(s) 373
TaqI TCGA 1 cut(s) 257
TasI AATT 8 cut(s) 24, 76, 197, 270, 300, 322, 336, 555
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 3 cut(s) 173, 526, 787
Tru1I TTAA 6 cut(s) 225, 341, 468, 488, 552, 956
Tru9I TTAA 6 cut(s) 225, 341, 468, 488, 552, 956
TscAI CASTG 2 cut(s) 355, 705
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 8 cut(s) 156, 208, 305, 308, 309, 506, 767, 870
TspGWI ACGGA 2 cut(s) 654, 984
TspRI CASTG 2 cut(s) 355, 705
Van91I CCANNNNNTGG 1 cut(s) 590
XapI RAATTY 2 cut(s) 76, 270
XbaI TCTAGA 1 cut(s) 911
XspI CTAG 4 cut(s) 438, 782, 816, 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.