Rh7DG185800

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002140
Physical Location & Seq
Forward (+)
17283894 .. 17289450
5557 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG185800.1

Sequence Viewer

Length: 1089 bp
ATGTCGTGTGATACTGCAAAGGAAATTGCATCTGTAGTGGACTCATCTGTTACTGAAAGGAAAGAAGACATGGGGAATTCAGATGAGCCAGAGAGTTCAAGTCACAAAGTTCCTGAGGGGGTTGAACCATGTAGATCAGATGAAGTGGGGCACTCTCATGATCATGTTGGGGATTCACCTGCAAGGAAAAAGGGTAAATTGTATGGTACACGATATTTCATCATTAAGAGTTTGTCTCATGAGAATATCCAACTATCGATTGAGAAAGGAATTTGGGCTACCCAAGTGATGAATGAACCAATTTTGGAAGACGCTTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAACTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATAATGATCTAAACGGCCTGAATAGGCCCTGCGTAGAGCCTCCGTGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCGCAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATATCTGGAGGTCTATGGCAGGAGCAGGAAGGAACTATATCAGCCTCAAACTCTGGATTATTGGCCTCAATCAGATTGGGTTTTCAGCCCGGAACTCTTGGATTCTTTGCTACCAATGAGAGAGAGGAGAAACAAACAGAAGAATCGGGCTTTGATATTGGGCGGAGCAGTCGGCCGCGGTGGAGAGCTCGACGGCGTGGGAAGCTCGTTTATGGAGATGAGGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

362

Amino Acids

41.31

Weight (kDa)

5.66

Isoelectric Point (pI)

55.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 70 - 205 4.5e-50 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 590
AccII CGCG 1 cut(s) 1038
AciI CCGC 4 cut(s) 484, 1023, 1036, 1038
AcoI YGGCCR 2 cut(s) 809, 1033
AcsI RAATTY 2 cut(s) 76, 270
AfaI GTAC 2 cut(s) 208, 542
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 4 cut(s) 99, 125, 535, 845
AhlI ACTAGT 1 cut(s) 437
AjnI CCWGG 2 cut(s) 452, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 5 cut(s) 599, 610, 815, 1048, 1065
AluI AGCT 5 cut(s) 599, 610, 815, 1048, 1065
Alw21I GWGCWC 1 cut(s) 1050
Alw26I GTCTC 4 cut(s) 240, 408, 558, 585
AlwNI CAGNNNCTG 1 cut(s) 567
AoxI GGCC 5 cut(s) 637, 647, 809, 923, 1033
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 76, 270
AspS9I GGNCC 1 cut(s) 648
AsuC2I CCSGG 1 cut(s) 950
AsuHPI GGTGA 1 cut(s) 168
AxyI CCTNAGG 1 cut(s) 114
BaeGI GKGCMC 1 cut(s) 153
BanII GRGCYC 1 cut(s) 1050
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 72, 315, 387
Bbv12I GWGCWC 1 cut(s) 1050
BbvI GCAGC 1 cut(s) 468
BccI CCATC 1 cut(s) 399
BceAI ACGGC 2 cut(s) 652, 1069
BciT130I CCWGG 2 cut(s) 454, 572
BclI TGATCA 1 cut(s) 160
BcnI CCSGG 1 cut(s) 950
BcoDI GTCTC 4 cut(s) 240, 408, 558, 585
BcuI ACTAGT 1 cut(s) 437
BfaI CTAG 3 cut(s) 438, 782, 816
BfmI CTRYAG 1 cut(s) 33
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 2 cut(s) 482, 1036
BlsI GCNGC 2 cut(s) 483, 1037
Bme1390I CCNGG 3 cut(s) 454, 572, 950
BmgT120I GGNCC 1 cut(s) 648
BmrFI CCNGG 3 cut(s) 454, 572, 950
BmsI GCATC 2 cut(s) 38, 712
BpiI GAAGAC 3 cut(s) 72, 315, 387
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 585, 617
BpmI CTGGAG 2 cut(s) 567, 887
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 950
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 373, 452, 453, 1036
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 1 cut(s) 698
Bse21I CCTNAGG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 454, 572
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 373, 452, 453, 1036
BseGI GGATG 2 cut(s) 410, 838
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 2 cut(s) 105, 819
BseNI ACTGG 1 cut(s) 698
BseRI GAGGAG 1 cut(s) 1000
BseSI GKGCMC 1 cut(s) 153
BseX3I CGGCCG 1 cut(s) 1033
BseXI GCAGC 1 cut(s) 468
Bsh1236I CGCG 1 cut(s) 1038
Bsh1285I CGRYCG 1 cut(s) 1036
BshFI GGCC 5 cut(s) 639, 649, 811, 925, 1035
BshVI ATCGAT 1 cut(s) 257
BsiEI CGRYCG 1 cut(s) 1036
BsiHKAI GWGCWC 1 cut(s) 1050
BsiSI CCGG 2 cut(s) 808, 950
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 4 cut(s) 240, 408, 558, 585
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 5 cut(s) 639, 649, 811, 925, 1035
Bsp1286I GDGCHC 2 cut(s) 153, 1050
Bsp143I GATC 4 cut(s) 134, 160, 493, 628
BspACI CCGC 4 cut(s) 484, 1023, 1036, 1038
BspANI GGCC 5 cut(s) 639, 649, 811, 925, 1035
BspCNI CTCAG 2 cut(s) 106, 820
BspDI ATCGAT 1 cut(s) 257
BspFNI CGCG 1 cut(s) 1038
BspHI TCATGA 2 cut(s) 157, 238
BspMI ACCTGC 1 cut(s) 187
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 1 cut(s) 698
BssAI RCCGGY 1 cut(s) 807
BssECI CCNNGG 4 cut(s) 373, 452, 453, 1036
BssMI GATC 4 cut(s) 134, 160, 493, 628
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 2 cut(s) 454, 572
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 567
BstC8I GCNNGC 2 cut(s) 809, 813
BstDEI CTNAG 2 cut(s) 114, 828
BstDSI CCRYGG 1 cut(s) 1036
BstF5I GGATG 2 cut(s) 410, 838
BstFNI CGCG 1 cut(s) 1038
BstKTI GATC 4 cut(s) 137, 163, 496, 631
BstMAI GTCTC 4 cut(s) 240, 408, 558, 585
BstMBI GATC 4 cut(s) 134, 160, 493, 628
BstMCI CGRYCG 1 cut(s) 1036
BstMWI GCNNNNNNNGC 2 cut(s) 567, 1062
BstNI CCWGG 2 cut(s) 454, 572
BstSCI CCNGG 3 cut(s) 452, 570, 948
BstSFI CTRYAG 1 cut(s) 33
BstSLI GKGCMC 1 cut(s) 153
BstUI CGCG 1 cut(s) 1038
BstV1I GCAGC 1 cut(s) 468
BstV2I GAAGAC 3 cut(s) 72, 315, 387
BstZI CGGCCG 1 cut(s) 1033
Bsu15I ATCGAT 1 cut(s) 257
Bsu36I CCTNAGG 1 cut(s) 114
BsuRI GGCC 5 cut(s) 639, 649, 811, 925, 1035
BsuTUI ATCGAT 1 cut(s) 257
BtgI CCRYGG 1 cut(s) 1036
BtsCI GGATG 2 cut(s) 410, 838
BtsIMutI CAGTG 2 cut(s) 355, 705
BveI ACCTGC 1 cut(s) 187
Cac8I GCNNGC 2 cut(s) 809, 813
CaiI CAGNNNCTG 1 cut(s) 567
CciI TCATGA 2 cut(s) 157, 238
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 648
Cfr42I CCGCGG 1 cut(s) 1039
ClaI ATCGAT 1 cut(s) 257
CseI GACGC 2 cut(s) 320, 468
Csp6I GTAC 2 cut(s) 207, 541
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 9 cut(s) 70, 129, 158, 164, 239, 358, 727, 742, 1086
CviQI GTAC 2 cut(s) 207, 541
DdeI CTNAG 2 cut(s) 114, 828
DpnI GATC 4 cut(s) 136, 162, 495, 630
DpnII GATC 4 cut(s) 134, 160, 493, 628
EaeI YGGCCR 2 cut(s) 809, 1033
EagI CGGCCG 1 cut(s) 1033
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
EciI GGCGGA 1 cut(s) 1038
Ecl136II GAGCTC 1 cut(s) 1048
EclXI CGGCCG 1 cut(s) 1033
Eco130I CCWWGG 1 cut(s) 373
Eco24I GRGCYC 1 cut(s) 1050
Eco52I CGGCCG 1 cut(s) 1033
Eco53kI GAGCTC 1 cut(s) 1048
Eco81I CCTNAGG 1 cut(s) 114
EcoICRI GAGCTC 1 cut(s) 1048
EcoO109I RGGNCCY 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 452, 570
EcoT14I CCWWGG 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 1050
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 730, 745, 1089
FaqI GGGAC 1 cut(s) 471
FatI CATG 9 cut(s) 69, 128, 157, 163, 238, 357, 726, 741, 1085
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 482, 1036
FokI GGATG 2 cut(s) 417, 845
FriOI GRGCYC 1 cut(s) 1050
Fsp4HI GCNGC 2 cut(s) 482, 1036
FspBI CTAG 3 cut(s) 438, 782, 816
GluI GCNGC 2 cut(s) 482, 1036
GsuI CTGGAG 2 cut(s) 567, 887
HaeIII GGCC 5 cut(s) 639, 649, 811, 925, 1035
HapII CCGG 2 cut(s) 808, 950
HgaI GACGC 2 cut(s) 320, 468
Hin1II CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 730, 745, 1089
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HinfI GANTC 7 cut(s) 41, 173, 427, 526, 787, 962, 1003
HpaII CCGG 2 cut(s) 808, 950
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 3 cut(s) 40, 209, 355
Hpy188I TCNGA 5 cut(s) 82, 139, 792, 825, 934
Hpy188III TCNNGA 9 cut(s) 113, 158, 239, 523, 584, 614, 842, 866, 914
Hpy8I GTNNAC 3 cut(s) 40, 209, 355
Hpy99I CGWCG 1 cut(s) 1055
HpyAV CCTTC 2 cut(s) 747, 883
HpyCH4V TGCA 5 cut(s) 17, 29, 182, 383, 703
HpyF10VI GCNNNNNNNGC 2 cut(s) 567, 1062
HpyF3I CTNAG 2 cut(s) 114, 828
Hsp92II CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 730, 745, 1089
KroI GCCGGC 1 cut(s) 807
KroNI GCCGGC 1 cut(s) 809
Ksp22I TGATCA 1 cut(s) 160
KspI CCGCGG 1 cut(s) 1039
Kzo9I GATC 4 cut(s) 134, 160, 493, 628
LmnI GCTCC 2 cut(s) 882, 1025
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 38, 712
MaeI CTAG 3 cut(s) 438, 782, 816
MaeIII GTNAC 2 cut(s) 49, 101
MalI GATC 4 cut(s) 136, 162, 495, 630
MboI GATC 4 cut(s) 134, 160, 493, 628
MboII GAAGA 7 cut(s) 77, 320, 361, 387, 506, 869, 1012
MhlI GDGCHC 2 cut(s) 153, 1050
MluCI AATT 8 cut(s) 24, 76, 197, 270, 300, 322, 336, 555
MlyI GAGTC 2 cut(s) 35, 436
MmeI TCCRAC 4 cut(s) 274, 382, 529, 571
MnlI CCTC 9 cut(s) 109, 402, 672, 823, 862, 915, 936, 978, 1074
MroNI GCCGGC 1 cut(s) 807
MseI TTAA 5 cut(s) 225, 341, 468, 488, 552
MslI CAYNNNNRTG 2 cut(s) 156, 162
MspA1I CMGCKG 1 cut(s) 1038
MspI CCGG 2 cut(s) 808, 950
MspR9I CCNGG 3 cut(s) 454, 572, 950
MvaI CCWGG 2 cut(s) 454, 572
MvnI CGCG 1 cut(s) 1038
MwoI GCNNNNNNNGC 2 cut(s) 567, 1062
NaeI GCCGGC 1 cut(s) 809
NciI CCSGG 1 cut(s) 950
NdeII GATC 4 cut(s) 134, 160, 493, 628
NgoMIV GCCGGC 1 cut(s) 807
NlaIII CATG 9 cut(s) 73, 132, 161, 167, 242, 361, 730, 745, 1089
NmuCI GTSAC 1 cut(s) 101
PagI TCATGA 2 cut(s) 157, 238
PaqCI CACCTGC 1 cut(s) 187
PasI CCCWGGG 1 cut(s) 453
PdiI GCCGGC 1 cut(s) 809
PfeI GAWTC 5 cut(s) 173, 526, 787, 962, 1003
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 2 cut(s) 483, 1037
PleI GAGTC 2 cut(s) 35, 435
PpsI GAGTC 2 cut(s) 35, 435
Psp124BI GAGCTC 1 cut(s) 1050
Psp6I CCWGG 2 cut(s) 452, 570
PspGI CCWGG 2 cut(s) 452, 570
PspPI GGNCC 1 cut(s) 648
PstNI CAGNNNCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 208, 542
RsaNI GTAC 2 cut(s) 207, 541
RseI CAYNNNNRTG 2 cut(s) 156, 162
SacI GAGCTC 1 cut(s) 1050
SacII CCGCGG 1 cut(s) 1039
SaqAI TTAA 5 cut(s) 225, 341, 468, 488, 552
SatI GCNGC 2 cut(s) 482, 1036
Sau3AI GATC 4 cut(s) 134, 160, 493, 628
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 2 cut(s) 35, 436
ScrFI CCNGG 3 cut(s) 454, 572, 950
SduI GDGCHC 2 cut(s) 153, 1050
SetI ASST 9 cut(s) 181, 474, 550, 601, 612, 817, 873, 1050, 1067
SfaNI GCATC 2 cut(s) 38, 712
SfcI CTRYAG 1 cut(s) 33
Sfr303I CCGCGG 1 cut(s) 1039
SgrBI CCGCGG 1 cut(s) 1039
SmiMI CAYNNNNRTG 2 cut(s) 156, 162
SmlI CTYRAG 1 cut(s) 521
SmoI CTYRAG 1 cut(s) 521
SpeI ACTAGT 1 cut(s) 437
Sse9I AATT 8 cut(s) 24, 76, 197, 270, 300, 322, 336, 555
SsiI CCGC 4 cut(s) 484, 1023, 1036, 1038
SspI AATATT 1 cut(s) 345
SspMI CTAG 3 cut(s) 438, 782, 816
SstI GAGCTC 1 cut(s) 1050
StyD4I CCNGG 3 cut(s) 452, 570, 948
StyI CCWWGG 1 cut(s) 373
TaqI TCGA 2 cut(s) 257, 1050
TasI AATT 8 cut(s) 24, 76, 197, 270, 300, 322, 336, 555
TatI WGTACW 1 cut(s) 540
TauI GCSGC 1 cut(s) 1038
TfiI GAWTC 5 cut(s) 173, 526, 787, 962, 1003
Tru1I TTAA 5 cut(s) 225, 341, 468, 488, 552
Tru9I TTAA 5 cut(s) 225, 341, 468, 488, 552
TscAI CASTG 2 cut(s) 355, 705
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 8 cut(s) 156, 208, 305, 308, 309, 506, 767, 870
TspGWI ACGGA 1 cut(s) 654
TspRI CASTG 2 cut(s) 355, 705
Van91I CCANNNNNTGG 1 cut(s) 590
XapI RAATTY 2 cut(s) 76, 270
XspI CTAG 3 cut(s) 438, 782, 816
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.