Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0002140

Physical Location & Seq

Genomic Coordinates Reverse (-)

52306535 .. 52314037

Gene Structure 7503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003755

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1368 bp

ATGATAGGCTCCCAACCCAACTCTTACTCTTTCACTTCCTCTCTTCGTCTTCTGTCTTCTAAACAGGTTGATAGAGATATGTCGTGTGATACTGCAAAGGAAAATGCATCTGTAGTGGACTCATCTGTTACTGAAAGGAAAGAAGACATGGGGAATTCAGATGAGCCAGAGAGTTCAAGTCACAAAGTTCCTGAGGGGGTTGATCCATCTAGATCAGATGAAGTGGGGCACTCTCGTGATCATGTTGGGGATTCACCTGCAAGGAAAAAGGGTAAATTGTATGGTACACGATATTTCATCATTAAGAGTTTGTCTCATGAGAATATCCAACTATCGATTGAGAAAGGAATTTGGGCTACTCAAGTAATGAATGAACCAATTTTGGAAGACGCTTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTTCTTCCAAGGGTTTGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGATAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATAATGATCTAAACGGCCTGAATAGTATACACATGGATTATTTTCCTTCAAAAAGGCCCTGCATAGAGCCTCCATGTTCAGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCGCAAACTCCCATGCTTTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATATCTGGAGGTTTATGGCAGAAGCAGGAAGGAACTATATCAGCCTGTCAGAAATGAGGGAAGTCATCATGCCTTACCCAAAGGTCGTCAACCGGTAAAGGTCCAGCCTATTGAAGTTCCGCTTATACCAGTAGAGGAGCTAAAGGAAATTACAGATAACTTTGGGACAAATGCCTTGATTGGGGAAGGTTCGTATGGAAGAGTATATTCTGGGGTACTTAAAAGCAGGGAGCATGTAGCAATCAAGAAGCTATATGCCAGCAAACAACCTGATGAGGTTTCTATGGTATCACAGCTGAAACATGATAATTTTGTTCAACTGCTTGGTTACTGTTTTGATGGGAATTCTCGTGTTCTTGCCTACGTGTTTGCATCTAATGGATCTTTTCAATTTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YTH

Protein Analysis

456

Amino Acids

51.59

Weight (kDa)

6.19

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YTH	PF04146	96 - 231	2.5e-49	YT521-B-like domain
Pkinase	PF00069	380 - 452	2.6e-07	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	381 - 452	4.1e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002140)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970 AT4G11970
fragaria_vesca	FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140 FvH4_5g01140
malus_domestica	MD06G1069100.v1.1
prunus_persica	Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1 Prupe.5G086300_v2.0.a1
pyrus_communis	pycom06g06770
rosa_chinensis	RchiOBHm_Chr7g0199981 RchiOBHm_Chr7g0200101
rosa_laevigata	RLG00000003755
rosa_multiflora	Rmu_sc0006685.1_g000004
rosa_roxburghii	Rroxscaffold_3G00256310
rosa_rugosa	Rorug07G0057600
rosa_samantha	Rh7AG182800 Rh7BG186000 Rh7CG192600 Rh7DG185800 Rh7DG187000
rosa_wichuraiana	Rw7G016030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AccB7I	CCANNNNNTGG	1 cut(s)	668
AccI	GTMKAC	1 cut(s)	727
AciI	CCGC	2 cut(s)	562, 1088
AclWI	GGATC	2 cut(s)	197, 1357
AcoI	YGGCCR	1 cut(s)	917
AcsI	RAATTY	3 cut(s)	154, 348, 1312
AfaI	GTAC	3 cut(s)	286, 620, 1185
AfiI	CCNNNNNNNGG	2 cut(s)	668, 1149
AflIII	ACRYGT	1 cut(s)	1332
AgeI	ACCGGT	1 cut(s)	1060
AgsI	TTSAA	7 cut(s)	177, 613, 750, 953, 1082, 1286, 1358
AjnI	CCWGG	2 cut(s)	530, 648
AjuI	GAANNNNNNNTTGG	2 cut(s)	576, 608
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	6 cut(s)	677, 688, 923, 1108, 1219, 1264
AluI	AGCT	6 cut(s)	677, 688, 923, 1108, 1219, 1264
Alw26I	GTCTC	3 cut(s)	318, 636, 663
AlwI	GGATC	2 cut(s)	197, 1357
AlwNI	CAGNNNCTG	1 cut(s)	645
AoxI	GGCC	3 cut(s)	715, 755, 917
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	3 cut(s)	154, 348, 1312
AsiGI	ACCGGT	1 cut(s)	1060
AspS9I	GGNCC	2 cut(s)	756, 1069
AsuHPI	GGTGA	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	1069
AxyI	CCTNAGG	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	231
BauI	CACGAG	3 cut(s)	234, 817, 1317
BbsI	GAAGAC	5 cut(s)	41, 48, 150, 393, 465
BbvI	GCAGC	1 cut(s)	546
BccI	CCATC	3 cut(s)	214, 477, 1301
BceAI	ACGGC	1 cut(s)	730
BciT130I	CCWGG	2 cut(s)	532, 650
BclI	TGATCA	1 cut(s)	238
BcoDI	GTCTC	3 cut(s)	318, 636, 663
BfaI	CTAG	3 cut(s)	210, 890, 924
BfmI	CTRYAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	1 cut(s)	560
BlsI	GCNGC	1 cut(s)	561
Bme1390I	CCNGG	2 cut(s)	532, 650
Bme18I	GGWCC	1 cut(s)	1069
BmgT120I	GGNCC	2 cut(s)	756, 1069
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	532, 650
BmsI	GCATC	3 cut(s)	116, 820, 1349
BpiI	GAAGAC	5 cut(s)	41, 48, 150, 393, 465
BplI	GAGNNNNNCTC	4 cut(s)	298, 330, 663, 695
BpmI	CTGGAG	2 cut(s)	645, 995
BpuEI	CTTGAG	2 cut(s)	345, 584
Bsa29I	ATCGAT	1 cut(s)	335
BsaAI	YACGTR	1 cut(s)	1333
BsaJI	CCNNGG	3 cut(s)	451, 530, 531
BsaWI	WCCGGW	1 cut(s)	1060
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 1149
Bse118I	RCCGGY	2 cut(s)	915, 1060
Bse1I	ACTGG	2 cut(s)	806, 1097
Bse21I	CCTNAGG	1 cut(s)	192
BseBI	CCWGG	2 cut(s)	532, 650
BseCI	ATCGAT	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	451, 530, 531
BseGI	GGATG	2 cut(s)	488, 946
BseLI	CCNNNNNNNGG	2 cut(s)	668, 1149
BseMII	CTCAG	2 cut(s)	183, 927
BseNI	ACTGG	2 cut(s)	806, 1097
BseRI	GAGGAG	1 cut(s)	1118
BseSI	GKGCMC	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	546
BshFI	GGCC	3 cut(s)	717, 757, 919
BshTI	ACCGGT	1 cut(s)	1060
BshVI	ATCGAT	1 cut(s)	335
BsiSI	CCGG	2 cut(s)	916, 1061
BslFI	GGGAC	2 cut(s)	549, 1147
BslI	CCNNNNNNNGG	2 cut(s)	668, 1149
BsmAI	GTCTC	3 cut(s)	318, 636, 663
BsmFI	GGGAC	2 cut(s)	549, 1147
BsnI	GGCC	3 cut(s)	717, 757, 919
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp143I	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
BspACI	CCGC	2 cut(s)	562, 1088
BspANI	GGCC	3 cut(s)	717, 757, 919
BspCNI	CTCAG	2 cut(s)	184, 928
BspDI	ATCGAT	1 cut(s)	335
BspHI	TCATGA	2 cut(s)	316, 1364
BspLI	GGNNCC	1 cut(s)	10
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	2 cut(s)	197, 1357
BsrFI	RCCGGY	2 cut(s)	915, 1060
BsrI	ACTGG	2 cut(s)	806, 1097
BssAI	RCCGGY	2 cut(s)	915, 1060
BssECI	CCNNGG	3 cut(s)	451, 530, 531
BssMI	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
BssNAI	GTATAC	1 cut(s)	728
BssSI	CACGAG	3 cut(s)	234, 817, 1317
BssT1I	CCWWGG	1 cut(s)	451
Bst1107I	GTATAC	1 cut(s)	728
Bst2BI	CACGAG	3 cut(s)	234, 817, 1317
Bst2UI	CCWGG	2 cut(s)	532, 650
Bst4CI	ACNGT	1 cut(s)	1301
Bst6I	CTCTTC	3 cut(s)	48, 597, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	645
BstBAI	YACGTR	1 cut(s)	1333
BstC8I	GCNNGC	3 cut(s)	917, 921, 1228
BstDEI	CTNAG	2 cut(s)	192, 936
BstF5I	GGATG	2 cut(s)	488, 946
BstKTI	GATC	6 cut(s)	205, 215, 241, 574, 709, 1352
BstMAI	GTCTC	3 cut(s)	318, 636, 663
BstMBI	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
BstMWI	GCNNNNNNNGC	1 cut(s)	645
BstNI	CCWGG	2 cut(s)	532, 650
BstNSI	RCATGY	1 cut(s)	1205
BstSCI	CCNGG	2 cut(s)	530, 648
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	231
BstV1I	GCAGC	1 cut(s)	546
BstV2I	GAAGAC	5 cut(s)	41, 48, 150, 393, 465
BstX2I	RGATCY	1 cut(s)	1349
BstYI	RGATCY	1 cut(s)	1349
BstZ17I	GTATAC	1 cut(s)	728
Bsu15I	ATCGAT	1 cut(s)	335
Bsu36I	CCTNAGG	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	717, 757, 919
BsuTUI	ATCGAT	1 cut(s)	335
BtsCI	GGATG	2 cut(s)	488, 946
BtsIMutI	CAGTG	2 cut(s)	433, 813
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	3 cut(s)	917, 921, 1228
CaiI	CAGNNNCTG	1 cut(s)	645
CciI	TCATGA	2 cut(s)	316, 1364
Cfr10I	RCCGGY	2 cut(s)	915, 1060
Cfr13I	GGNCC	2 cut(s)	756, 1069
ClaI	ATCGAT	1 cut(s)	335
CseI	GACGC	2 cut(s)	398, 546
Csp6I	GTAC	3 cut(s)	285, 619, 1184
CspAI	ACCGGT	1 cut(s)	1060
CspCI	CAANNNNNGTGG	2 cut(s)	421, 456
CviQI	GTAC	3 cut(s)	285, 619, 1184
DdeI	CTNAG	2 cut(s)	192, 936
DpnI	GATC	6 cut(s)	204, 214, 240, 573, 708, 1351
DpnII	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
EaeI	YGGCCR	1 cut(s)	917
Eam1104I	CTCTTC	3 cut(s)	48, 597, 1162
EarI	CTCTTC	3 cut(s)	48, 597, 1162
Eco130I	CCWWGG	1 cut(s)	451
Eco47I	GGWCC	1 cut(s)	1069
Eco81I	CCTNAGG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	756
EcoRI	GAATTC	2 cut(s)	154, 1312
EcoRII	CCWGG	2 cut(s)	530, 648
EcoT14I	CCWWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	451
FalI	AAGNNNNNCTT	2 cut(s)	1074, 1106
FaqI	GGGAC	2 cut(s)	549, 1147
FbaI	TGATCA	1 cut(s)	238
FblI	GTMKAC	1 cut(s)	727
Fnu4HI	GCNGC	1 cut(s)	560
FokI	GGATG	2 cut(s)	495, 953
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	3 cut(s)	210, 890, 924
GluI	GCNGC	1 cut(s)	560
GsuI	CTGGAG	2 cut(s)	645, 995
HaeIII	GGCC	3 cut(s)	717, 757, 919
HapII	CCGG	2 cut(s)	916, 1061
HgaI	GACGC	2 cut(s)	398, 546
HincII	GTYRAC	2 cut(s)	433, 1058
HindII	GTYRAC	2 cut(s)	433, 1058
HinfI	GANTC	5 cut(s)	119, 251, 505, 604, 895
HpaII	CCGG	2 cut(s)	916, 1061
HphI	GGTGA	1 cut(s)	246
Hpy166II	GTNNAC	5 cut(s)	118, 287, 433, 728, 1058
Hpy188I	TCNGA	5 cut(s)	160, 217, 900, 933, 1019
Hpy8I	GTNNAC	5 cut(s)	118, 287, 433, 728, 1058
HpyAV	CCTTC	4 cut(s)	756, 855, 991, 1148
HpyCH4III	ACNGT	1 cut(s)	1301
HpyCH4IV	ACGT	1 cut(s)	1332
HpyCH4V	TGCA	7 cut(s)	95, 107, 260, 461, 762, 811, 1340
HpyF10VI	GCNNNNNNNGC	1 cut(s)	645
HpyF3I	CTNAG	2 cut(s)	192, 936
HpySE526I	ACGT	1 cut(s)	1332
KroI	GCCGGC	1 cut(s)	915
KroNI	GCCGGC	1 cut(s)	917
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
LmnI	GCTCC	3 cut(s)	14, 1105, 1198
Lsp1109I	GCAGC	1 cut(s)	546
LweI	GCATC	3 cut(s)	116, 820, 1349
MaeI	CTAG	3 cut(s)	210, 890, 924
MaeII	ACGT	1 cut(s)	1332
MaeIII	GTNAC	3 cut(s)	127, 179, 1295
MalI	GATC	6 cut(s)	204, 214, 240, 573, 708, 1351
MboI	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
MflI	RGATCY	1 cut(s)	1349
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	2 cut(s)	113, 514
MmeI	TCCRAC	4 cut(s)	352, 460, 607, 649
MnlI	CCTC	9 cut(s)	49, 187, 480, 780, 931, 970, 1018, 1096, 1237
Mph1103I	ATGCAT	1 cut(s)	109
MroNI	GCCGGC	1 cut(s)	915
MseI	TTAA	6 cut(s)	303, 419, 546, 566, 630, 1188
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	1264
MspI	CCGG	2 cut(s)	916, 1061
MspR9I	CCNGG	2 cut(s)	532, 650
MvaI	CCWGG	2 cut(s)	532, 650
MwoI	GCNNNNNNNGC	1 cut(s)	645
NaeI	GCCGGC	1 cut(s)	917
NdeII	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
NgoMIV	GCCGGC	1 cut(s)	915
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	179
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	1205
OliI	CACNNNNGTG	1 cut(s)	234
PagI	TCATGA	2 cut(s)	316, 1364
PaqCI	CACCTGC	1 cut(s)	265
PasI	CCCWGGG	1 cut(s)	531
PdiI	GCCGGC	1 cut(s)	917
PfeI	GAWTC	3 cut(s)	251, 604, 895
PflMI	CCANNNNNTGG	1 cut(s)	668
PinAI	ACCGGT	1 cut(s)	1060
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	2 cut(s)	113, 513
PpsI	GAGTC	2 cut(s)	113, 513
Ppu21I	YACGTR	1 cut(s)	1333
Psp6I	CCWGG	2 cut(s)	530, 648
PspGI	CCWGG	2 cut(s)	530, 648
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	2 cut(s)	756, 1069
PstNI	CAGNNNCTG	1 cut(s)	645
PsuI	RGATCY	1 cut(s)	1349
PvuII	CAGCTG	1 cut(s)	1264
RsaI	GTAC	3 cut(s)	286, 620, 1185
RsaNI	GTAC	3 cut(s)	285, 619, 1184
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	6 cut(s)	303, 419, 546, 566, 630, 1188
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	6 cut(s)	202, 212, 238, 571, 706, 1349
Sau96I	GGNCC	2 cut(s)	756, 1069
SchI	GAGTC	2 cut(s)	113, 514
ScrFI	CCNGG	2 cut(s)	532, 650
SduI	GDGCHC	1 cut(s)	231
SfaNI	GCATC	3 cut(s)	116, 820, 1349
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	1069
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	2 cut(s)	360, 599
SmoI	CTYRAG	2 cut(s)	360, 599
SsiI	CCGC	2 cut(s)	562, 1088
SspI	AATATT	1 cut(s)	423
SspMI	CTAG	3 cut(s)	210, 890, 924
StyD4I	CCNGG	2 cut(s)	530, 648
StyI	CCWWGG	1 cut(s)	451
TaaI	ACNGT	1 cut(s)	1301
TaiI	ACGT	1 cut(s)	1335
TaqI	TCGA	1 cut(s)	335
TatI	WGTACW	1 cut(s)	618
TfiI	GAWTC	3 cut(s)	251, 604, 895
Tru1I	TTAA	6 cut(s)	303, 419, 546, 566, 630, 1188
Tru9I	TTAA	6 cut(s)	303, 419, 546, 566, 630, 1188
TscAI	CASTG	2 cut(s)	433, 813
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	9 cut(s)	234, 286, 383, 386, 387, 584, 875, 978, 1353
TspRI	CASTG	2 cut(s)	433, 813
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	1 cut(s)	1069
XapI	RAATTY	3 cut(s)	154, 348, 1312
XbaI	TCTAGA	1 cut(s)	209
XceI	RCATGY	1 cut(s)	1205
XmiI	GTMKAC	1 cut(s)	727
XspI	CTAG	3 cut(s)	210, 890, 924
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.