RchiOBHm_Chr7g0200101

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002140
Physical Location & Seq
Forward (+)
17993529 .. 17996614
3086 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ17909

Sequence Viewer

Length: 678 bp
ATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAACTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCGGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATGATGATCTAAACGGCCTGAATAGGCCCTGCGTAGAGCCTCCATGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCACAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCTAGCGAATCAGAAATCTACTGATAGCCGGCCAGCTAGTGTTCTGACTGAGGATGATTTTCTTGAAATGTCTTATGAAGAATATCTGGAGGTCTATGGCAGAAGCAGGAAGGAACTATATCAGCCTGGTTCTAGATCACAGAAGTCATCCAGAAGTAAAATGCAGGAGGATGATTTAAACTCAAGTTACGGAGGTAACCTCATCTGCTCAAGGAAAAGAGCTCATCAGTCATCCCATAAGCAATCACAATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

225

Amino Acids

26.11

Weight (kDa)

8.17

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 2 - 86 6.6e-26 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 233
AciI CCGC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 452
AfaI GTAC 1 cut(s) 185
AfiI CCNNNNNNNGG 1 cut(s) 233
AgsI TTSAA 2 cut(s) 178, 488
AhlI ACTAGT 1 cut(s) 80
AjnI CCWGG 3 cut(s) 95, 213, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 141, 173
AluBI AGCT 4 cut(s) 242, 253, 458, 644
AluI AGCT 4 cut(s) 242, 253, 458, 644
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 3 cut(s) 51, 201, 228
AlwNI CAGNNNCTG 1 cut(s) 210
AoxI GGCC 3 cut(s) 280, 290, 452
ApeKI GCWGC 1 cut(s) 124
AspS9I GGNCC 1 cut(s) 291
BanII GRGCYC 1 cut(s) 646
BauI CACGAG 1 cut(s) 352
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 1 cut(s) 111
BccI CCATC 1 cut(s) 42
BceAI ACGGC 1 cut(s) 295
BciT130I CCWGG 3 cut(s) 97, 215, 549
BcoDI GTCTC 3 cut(s) 51, 201, 228
BcuI ACTAGT 1 cut(s) 80
BfaI CTAG 4 cut(s) 81, 425, 459, 555
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
Bme1390I CCNGG 3 cut(s) 97, 215, 549
BmgT120I GGNCC 1 cut(s) 291
BmrFI CCNGG 3 cut(s) 97, 215, 549
BmsI GCATC 1 cut(s) 355
BpiI GAAGAC 1 cut(s) 30
BplI GAGNNNNNCTC 4 cut(s) 228, 260, 606, 638
BpmI CTGGAG 2 cut(s) 210, 530
BpuEI CTTGAG 3 cut(s) 149, 589, 616
BsaJI CCNNGG 3 cut(s) 16, 95, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse118I RCCGGY 1 cut(s) 450
Bse1I ACTGG 1 cut(s) 341
BseBI CCWGG 3 cut(s) 97, 215, 549
BseDI CCNNGG 3 cut(s) 16, 95, 96
BseGI GGATG 5 cut(s) 53, 481, 569, 598, 653
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 1 cut(s) 341
BseXI GCAGC 1 cut(s) 111
BshFI GGCC 3 cut(s) 282, 292, 454
BsiHKAI GWGCWC 1 cut(s) 646
BsiSI CCGG 1 cut(s) 451
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 3 cut(s) 51, 201, 228
BsmFI GGGAC 1 cut(s) 114
BsnI GGCC 3 cut(s) 282, 292, 454
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 3 cut(s) 136, 271, 557
BspACI CCGC 1 cut(s) 127
BspANI GGCC 3 cut(s) 282, 292, 454
BspCNI CTCAG 1 cut(s) 463
BsrFI RCCGGY 1 cut(s) 450
BsrI ACTGG 1 cut(s) 341
BssAI RCCGGY 1 cut(s) 450
BssECI CCNNGG 3 cut(s) 16, 95, 96
BssMI GATC 3 cut(s) 136, 271, 557
BssSI CACGAG 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 16
Bst2BI CACGAG 1 cut(s) 352
Bst2UI CCWGG 3 cut(s) 97, 215, 549
Bst6I CTCTTC 1 cut(s) 162
BstAPI GCANNNNNTGC 1 cut(s) 210
BstC8I GCNNGC 2 cut(s) 452, 456
BstDEI CTNAG 1 cut(s) 471
BstEII GGTNACC 1 cut(s) 617
BstF5I GGATG 5 cut(s) 53, 481, 569, 598, 653
BstKTI GATC 3 cut(s) 139, 274, 560
BstMAI GTCTC 3 cut(s) 51, 201, 228
BstMBI GATC 3 cut(s) 136, 271, 557
BstMWI GCNNNNNNNGC 1 cut(s) 210
BstNI CCWGG 3 cut(s) 97, 215, 549
BstPI GGTNACC 1 cut(s) 617
BstSCI CCNGG 3 cut(s) 95, 213, 547
BstV1I GCAGC 1 cut(s) 111
BstV2I GAAGAC 1 cut(s) 30
BsuRI GGCC 3 cut(s) 282, 292, 454
BtsCI GGATG 5 cut(s) 53, 481, 569, 598, 653
BtsIMutI CAGTG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 452, 456
CaiI CAGNNNCTG 1 cut(s) 210
Cfr10I RCCGGY 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 291
CseI GACGC 1 cut(s) 111
Csp6I GTAC 1 cut(s) 184
CviAII CATG 4 cut(s) 266, 309, 370, 385
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 471
DpnI GATC 3 cut(s) 138, 273, 559
DpnII GATC 3 cut(s) 136, 271, 557
DraI TTTAAA 1 cut(s) 600
EaeI YGGCCR 1 cut(s) 452
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
Ecl136II GAGCTC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 16
Eco24I GRGCYC 1 cut(s) 646
Eco53kI GAGCTC 1 cut(s) 644
Eco91I GGTNACC 1 cut(s) 617
EcoICRI GAGCTC 1 cut(s) 644
EcoO109I RGGNCCY 1 cut(s) 291
EcoO65I GGTNACC 1 cut(s) 617
EcoRII CCWGG 3 cut(s) 95, 213, 547
EcoT14I CCWWGG 1 cut(s) 16
EcoT38I GRGCYC 1 cut(s) 646
ErhI CCWWGG 1 cut(s) 16
FaeI CATG 4 cut(s) 269, 312, 373, 388
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 265, 308, 369, 384
Fnu4HI GCNGC 1 cut(s) 125
FokI GGATG 5 cut(s) 60, 488, 556, 605, 640
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 1 cut(s) 125
FspBI CTAG 4 cut(s) 81, 425, 459, 555
GluI GCNGC 1 cut(s) 125
GsuI CTGGAG 2 cut(s) 210, 530
HaeIII GGCC 3 cut(s) 282, 292, 454
HapII CCGG 1 cut(s) 451
HgaI GACGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 269, 312, 373, 388
HinfI GANTC 3 cut(s) 70, 169, 430
HpaII CCGG 1 cut(s) 451
Hpy188I TCNGA 2 cut(s) 435, 468
Hpy188III TCNNGA 7 cut(s) 166, 227, 257, 485, 509, 555, 573
HpyAV CCTTC 2 cut(s) 390, 526
HpyCH4V TGCA 3 cut(s) 26, 346, 586
HpyF10VI GCNNNNNNNGC 1 cut(s) 210
HpyF3I CTNAG 1 cut(s) 471
Hsp92II CATG 4 cut(s) 269, 312, 373, 388
KroI GCCGGC 1 cut(s) 450
KroNI GCCGGC 1 cut(s) 452
Kzo9I GATC 3 cut(s) 136, 271, 557
Lsp1109I GCAGC 1 cut(s) 111
LweI GCATC 1 cut(s) 355
MaeI CTAG 4 cut(s) 81, 425, 459, 555
MaeIII GTNAC 3 cut(s) 357, 608, 617
MalI GATC 3 cut(s) 138, 273, 559
MboI GATC 3 cut(s) 136, 271, 557
MboII GAAGA 4 cut(s) 4, 30, 149, 512
MhlI GDGCHC 1 cut(s) 646
MluCI AATT 1 cut(s) 198
MlyI GAGTC 1 cut(s) 79
MmeI TCCRAC 3 cut(s) 25, 172, 214
MnlI CCTC 7 cut(s) 45, 315, 466, 505, 583, 608, 632
MroNI GCCGGC 1 cut(s) 450
MseI TTAA 4 cut(s) 111, 131, 195, 599
MspI CCGG 1 cut(s) 451
MspR9I CCNGG 3 cut(s) 97, 215, 549
MvaI CCWGG 3 cut(s) 97, 215, 549
MwoI GCNNNNNNNGC 1 cut(s) 210
NaeI GCCGGC 1 cut(s) 452
NdeII GATC 3 cut(s) 136, 271, 557
NgoMIV GCCGGC 1 cut(s) 450
NlaIII CATG 4 cut(s) 269, 312, 373, 388
NmuCI GTSAC 1 cut(s) 357
PasI CCCWGGG 1 cut(s) 96
PdiI GCCGGC 1 cut(s) 452
PfeI GAWTC 2 cut(s) 169, 430
PflMI CCANNNNNTGG 1 cut(s) 233
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 1 cut(s) 78
PpsI GAGTC 1 cut(s) 78
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 3 cut(s) 95, 213, 547
PspEI GGTNACC 1 cut(s) 617
PspGI CCWGG 3 cut(s) 95, 213, 547
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 210
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 4 cut(s) 111, 131, 195, 599
SatI GCNGC 1 cut(s) 125
Sau3AI GATC 3 cut(s) 136, 271, 557
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 79
ScrFI CCNGG 3 cut(s) 97, 215, 549
SduI GDGCHC 1 cut(s) 646
SetI ASST 9 cut(s) 117, 193, 244, 255, 460, 516, 619, 624, 646
SfaNI GCATC 1 cut(s) 355
SmlI CTYRAG 3 cut(s) 164, 604, 631
SmoI CTYRAG 3 cut(s) 164, 604, 631
SpeI ACTAGT 1 cut(s) 80
Sse9I AATT 1 cut(s) 198
SsiI CCGC 1 cut(s) 127
SspMI CTAG 4 cut(s) 81, 425, 459, 555
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 3 cut(s) 95, 213, 547
StyI CCWWGG 1 cut(s) 16
TasI AATT 1 cut(s) 198
TatI WGTACW 1 cut(s) 183
TfiI GAWTC 2 cut(s) 169, 430
Tru1I TTAA 4 cut(s) 111, 131, 195, 599
Tru9I TTAA 4 cut(s) 111, 131, 195, 599
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 1 cut(s) 124
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 3 cut(s) 149, 410, 513
TspGWI ACGGA 1 cut(s) 627
TspRI CASTG 1 cut(s) 348
Van91I CCANNNNNTGG 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 554
XspI CTAG 4 cut(s) 81, 425, 459, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.