Rh7BG186000

YT521-B-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002140
Physical Location & Seq
Forward (+)
14921077 .. 14927455
6379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG186000.1

Sequence Viewer

Length: 834 bp
ATGTCGTGTGATACTGCAAAGGAAAATGCATCTGTAGTGGACTCATCTGTTACTGAAAGGAAGGAAGACATGGGGAATTCAGATGAGCCAGAGAGTTCAAGTCACAAAGTTCCCGAGGGGGTTGATCCATCTAGATCAGATGAAGTGGGGCACTCTCATGATCATGTTGGGGATTCACCTGCAAGGAAAAAGGGTAAATTGTATGGTACACGATATTTCATCATTAAGAGTTTGTCTCATGAGAATATCCAACTATCGATTGAGAAAGGAATTTGGGCTACTCAAGTGATGAATGAACCAATTTTGGAAGACGCTTTTCATAATTCTGGTAAAGTAATTTTAATATTCAGTGTCAACATGAGTGGTTTCTTCCAAGGGTATGCACAAATGATGTCTTCTGTTGGATGGAGGCGAGACAATGTATGGAGTCAAGGAAGTAGTAGAAGTAATCCCTGGGGACGCAGTTTTAAGGTCAAATGGCTGCAGTTAAATGATCTGCCTTTCCAACAAACTCTTCATCTCAAGAATCCATTGAATGAGTACAAACCTGTTAAAATTAGCAGAGACTGCCAGGAGTTGTCTCCAGATGTTGGAGAAGCTCTCTGTGAGCTTCTTGATAGGCATAATGATCTAAACGGTCTGAATAGGCCCTGCGTAGAGCCTCCATGTTCGGTAGGGGAAAAAGAGTATAATATGCCAGTGCATCTCTCGTGGTCGCAAACTCCCATGCTCTATCCTTCCATGCTTTATCAACAACAGCCTGAAACAAAGAGATTTCATCAAGCGAATCAGAAATCTACTGGTATTATTCTTCCTTGCCTGTCAACTCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
YTH

Protein Analysis

277

Amino Acids

31.31

Weight (kDa)

6.06

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YTH PF04146 70 - 205 3.6e-50 YT521-B-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 187
Acc36I ACCTGC 1 cut(s) 187
AccB7I CCANNNNNTGG 1 cut(s) 590
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 2 cut(s) 76, 270
AfaI GTAC 2 cut(s) 208, 542
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 2 cut(s) 99, 535
AjnI CCWGG 2 cut(s) 452, 570
AjuI GAANNNNNNNTTGG 2 cut(s) 498, 530
AluBI AGCT 2 cut(s) 599, 610
AluI AGCT 2 cut(s) 599, 610
Alw26I GTCTC 4 cut(s) 240, 408, 558, 585
AlwI GGATC 1 cut(s) 119
AlwNI CAGNNNCTG 1 cut(s) 567
Ama87I CYCGRG 1 cut(s) 113
AoxI GGCC 1 cut(s) 647
ApeKI GCWGC 1 cut(s) 481
ApoI RAATTY 2 cut(s) 76, 270
AspS9I GGNCC 1 cut(s) 648
AsuHPI GGTGA 1 cut(s) 168
AvaI CYCGRG 1 cut(s) 113
BaeGI GKGCMC 1 cut(s) 153
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 3 cut(s) 72, 315, 387
BbvI GCAGC 1 cut(s) 468
BccI CCATC 2 cut(s) 136, 399
BciT130I CCWGG 2 cut(s) 454, 572
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 4 cut(s) 240, 408, 558, 585
BfaI CTAG 1 cut(s) 132
BfmI CTRYAG 2 cut(s) 33, 482
BfuAI ACCTGC 1 cut(s) 187
BisI GCNGC 1 cut(s) 482
BlsI GCNGC 1 cut(s) 483
Bme1390I CCNGG 2 cut(s) 454, 572
BmeT110I CYCGRG 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 648
BmrFI CCNGG 2 cut(s) 454, 572
BmsI GCATC 2 cut(s) 38, 712
BpiI GAAGAC 3 cut(s) 72, 315, 387
BplI GAGNNNNNCTC 4 cut(s) 220, 252, 585, 617
BpmI CTGGAG 1 cut(s) 567
BpuEI CTTGAG 2 cut(s) 267, 506
Bsa29I ATCGAT 1 cut(s) 257
BsaJI CCNNGG 4 cut(s) 114, 373, 452, 453
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse1I ACTGG 2 cut(s) 698, 805
BseBI CCWGG 2 cut(s) 454, 572
BseCI ATCGAT 1 cut(s) 257
BseDI CCNNGG 4 cut(s) 114, 373, 452, 453
BseGI GGATG 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 590
BseNI ACTGG 2 cut(s) 698, 805
BseSI GKGCMC 1 cut(s) 153
BseXI GCAGC 1 cut(s) 468
BshFI GGCC 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 257
BsiHKCI CYCGRG 1 cut(s) 113
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 4 cut(s) 240, 408, 558, 585
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 1 cut(s) 649
BsoBI CYCGRG 1 cut(s) 113
Bsp1286I GDGCHC 1 cut(s) 153
Bsp143I GATC 5 cut(s) 124, 134, 160, 493, 628
BspANI GGCC 1 cut(s) 649
BspDI ATCGAT 1 cut(s) 257
BspHI TCATGA 2 cut(s) 157, 238
BspMAI CTGCAG 1 cut(s) 486
BspMI ACCTGC 1 cut(s) 187
BspPI GGATC 1 cut(s) 119
BsrI ACTGG 2 cut(s) 698, 805
BssECI CCNNGG 4 cut(s) 114, 373, 452, 453
BssMI GATC 5 cut(s) 124, 134, 160, 493, 628
BssSI CACGAG 1 cut(s) 709
BssT1I CCWWGG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 2 cut(s) 454, 572
Bst4CI ACNGT 1 cut(s) 638
Bst6I CTCTTC 1 cut(s) 519
BstAPI GCANNNNNTGC 1 cut(s) 567
BstF5I GGATG 1 cut(s) 410
BstKTI GATC 5 cut(s) 127, 137, 163, 496, 631
BstMAI GTCTC 4 cut(s) 240, 408, 558, 585
BstMBI GATC 5 cut(s) 124, 134, 160, 493, 628
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 2 cut(s) 454, 572
BstSCI CCNGG 2 cut(s) 452, 570
BstSFI CTRYAG 2 cut(s) 33, 482
BstSLI GKGCMC 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 468
BstV2I GAAGAC 3 cut(s) 72, 315, 387
Bsu15I ATCGAT 1 cut(s) 257
BsuRI GGCC 1 cut(s) 649
BsuTUI ATCGAT 1 cut(s) 257
BtsCI GGATG 1 cut(s) 410
BtsIMutI CAGTG 2 cut(s) 355, 705
BveI ACCTGC 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 567
CciI TCATGA 2 cut(s) 157, 238
Cfr13I GGNCC 1 cut(s) 648
ClaI ATCGAT 1 cut(s) 257
CseI GACGC 2 cut(s) 320, 468
Csp6I GTAC 2 cut(s) 207, 541
CspCI CAANNNNNGTGG 2 cut(s) 343, 378
CviAII CATG 8 cut(s) 70, 158, 164, 239, 358, 666, 727, 742
CviJI RGCY 8 cut(s) 88, 278, 481, 599, 610, 649, 661, 760
CviKI_1 RGCY 8 cut(s) 88, 278, 481, 599, 610, 649, 661, 760
CviQI GTAC 2 cut(s) 207, 541
DpnI GATC 5 cut(s) 126, 136, 162, 495, 630
DpnII GATC 5 cut(s) 124, 134, 160, 493, 628
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 373
Eco88I CYCGRG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 76
EcoRII CCWGG 2 cut(s) 452, 570
EcoT14I CCWWGG 1 cut(s) 373
EcoT22I ATGCAT 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 373
FaeI CATG 8 cut(s) 73, 161, 167, 242, 361, 669, 730, 745
FaqI GGGAC 1 cut(s) 471
FatI CATG 8 cut(s) 69, 157, 163, 238, 357, 665, 726, 741
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 482
FokI GGATG 1 cut(s) 417
Fsp4HI GCNGC 1 cut(s) 482
FspBI CTAG 1 cut(s) 132
GluI GCNGC 1 cut(s) 482
GsuI CTGGAG 1 cut(s) 567
HaeIII GGCC 1 cut(s) 649
HgaI GACGC 2 cut(s) 320, 468
Hin1II CATG 8 cut(s) 73, 161, 167, 242, 361, 669, 730, 745
HincII GTYRAC 2 cut(s) 355, 825
HindII GTYRAC 2 cut(s) 355, 825
HinfI GANTC 5 cut(s) 41, 173, 427, 526, 787
HphI GGTGA 1 cut(s) 168
Hpy166II GTNNAC 4 cut(s) 40, 209, 355, 825
Hpy188I TCNGA 4 cut(s) 82, 139, 642, 792
Hpy188III TCNNGA 7 cut(s) 113, 132, 158, 239, 523, 584, 614
Hpy8I GTNNAC 4 cut(s) 40, 209, 355, 825
HpyAV CCTTC 2 cut(s) 55, 747
HpyCH4III ACNGT 1 cut(s) 638
HpyCH4V TGCA 6 cut(s) 17, 29, 182, 383, 484, 703
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
Hsp92II CATG 8 cut(s) 73, 161, 167, 242, 361, 669, 730, 745
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 5 cut(s) 124, 134, 160, 493, 628
Lsp1109I GCAGC 1 cut(s) 468
LweI GCATC 2 cut(s) 38, 712
MaeI CTAG 1 cut(s) 132
MaeIII GTNAC 2 cut(s) 49, 101
MalI GATC 5 cut(s) 126, 136, 162, 495, 630
MboI GATC 5 cut(s) 124, 134, 160, 493, 628
MboII GAAGA 6 cut(s) 77, 320, 361, 387, 506, 803
MhlI GDGCHC 1 cut(s) 153
MluCI AATT 7 cut(s) 76, 197, 270, 300, 322, 336, 555
MlyI GAGTC 2 cut(s) 35, 436
MmeI TCCRAC 4 cut(s) 274, 382, 529, 571
MnlI CCTC 3 cut(s) 109, 402, 672
Mph1103I ATGCAT 1 cut(s) 31
MseI TTAA 5 cut(s) 225, 341, 468, 488, 552
MslI CAYNNNNRTG 2 cut(s) 156, 162
MspR9I CCNGG 2 cut(s) 454, 572
MvaI CCWGG 2 cut(s) 454, 572
MwoI GCNNNNNNNGC 1 cut(s) 567
NdeII GATC 5 cut(s) 124, 134, 160, 493, 628
NlaIII CATG 8 cut(s) 73, 161, 167, 242, 361, 669, 730, 745
NmuCI GTSAC 1 cut(s) 101
NsiI ATGCAT 1 cut(s) 31
PagI TCATGA 2 cut(s) 157, 238
PaqCI CACCTGC 1 cut(s) 187
PasI CCCWGGG 1 cut(s) 453
PfeI GAWTC 3 cut(s) 173, 526, 787
PflMI CCANNNNNTGG 1 cut(s) 590
PkrI GCNGC 1 cut(s) 483
PleI GAGTC 2 cut(s) 35, 435
PpsI GAGTC 2 cut(s) 35, 435
Psp6I CCWGG 2 cut(s) 452, 570
PspGI CCWGG 2 cut(s) 452, 570
PspPI GGNCC 1 cut(s) 648
PstI CTGCAG 1 cut(s) 486
PstNI CAGNNNCTG 1 cut(s) 567
RsaI GTAC 2 cut(s) 208, 542
RsaNI GTAC 2 cut(s) 207, 541
RseI CAYNNNNRTG 2 cut(s) 156, 162
SaqAI TTAA 5 cut(s) 225, 341, 468, 488, 552
SatI GCNGC 1 cut(s) 482
Sau3AI GATC 5 cut(s) 124, 134, 160, 493, 628
Sau96I GGNCC 1 cut(s) 648
SchI GAGTC 2 cut(s) 35, 436
ScrFI CCNGG 2 cut(s) 454, 572
SduI GDGCHC 1 cut(s) 153
SetI ASST 5 cut(s) 181, 474, 550, 601, 612
SfaNI GCATC 2 cut(s) 38, 712
SfcI CTRYAG 2 cut(s) 33, 482
SmiMI CAYNNNNRTG 2 cut(s) 156, 162
SmlI CTYRAG 2 cut(s) 282, 521
SmoI CTYRAG 2 cut(s) 282, 521
Sse9I AATT 7 cut(s) 76, 197, 270, 300, 322, 336, 555
SspI AATATT 1 cut(s) 345
SspMI CTAG 1 cut(s) 132
StyD4I CCNGG 2 cut(s) 452, 570
StyI CCWWGG 1 cut(s) 373
TaaI ACNGT 1 cut(s) 638
TaqI TCGA 1 cut(s) 257
TasI AATT 7 cut(s) 76, 197, 270, 300, 322, 336, 555
TatI WGTACW 1 cut(s) 540
TfiI GAWTC 3 cut(s) 173, 526, 787
Tru1I TTAA 5 cut(s) 225, 341, 468, 488, 552
Tru9I TTAA 5 cut(s) 225, 341, 468, 488, 552
TscAI CASTG 2 cut(s) 355, 705
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 1 cut(s) 481
Tsp45I GTSAC 1 cut(s) 101
TspDTI ATGAA 7 cut(s) 156, 208, 305, 308, 309, 506, 767
TspRI CASTG 2 cut(s) 355, 705
Van91I CCANNNNNTGG 1 cut(s) 590
XapI RAATTY 2 cut(s) 76, 270
XbaI TCTAGA 1 cut(s) 131
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.