AT4G13150

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004444
Physical Location & Seq
Reverse (-)
7650053 .. 7652289
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G13150.2

Sequence Viewer

Length: 1044 bp
ATGTTGTCTTCCATGGTGGTTCCGGTGAATGGGTTTTCCTTAAACCTTTCAAAACCTAACCTTGTTGTCTTCAATGGCTCCAGAGTTTTCTATGGATCCTTCTCGCTTACTTGTTACAGGATCAAGGTAAGAAGCTCTCAAATAGGAATTGTTGGAGACAATGATTCCGAGAAGTCTCGAGATAGCAAAGATGAAGATGAGAATGAAAGAGTATCTGGAAAGGGAGTTCCATTCATAGTAAAGTTAGGTTTAGGGTTAGGATTAGCTATGATTATTACAGTTATTAGTGTAGCCTTGAAAGGCTCTGGTGGTGGTGGTTCACCTTTTGAGGAGGTTAAGAGTTTGGCCAAAGTTTCATCATCTTCAGAAGGCTTTACGTTTAATGCATTTGGAAACAGATTCATGATTCCAGGAAATGCACCGGGATGGGTTTACTTTTGGTTGCTAATGGCAGCCGGATGCGGACTTTTTATCAGCGAAGAGGCTCTAAATATATGGGTTGGGATAACATTGGCTAGAATGTTAACTCTAGATGGGACGTGGCAATCGTTTGCTGAGTCTTTTTCTCGGAATGCTCCTTATATAGTGTCTACTGTGTCATGGGTTTACTGGGGAGTTTGTTTAAGCGATATGATACCGTTTTACATTGGTAAGCTCTTTAGACAAAGTGGAGCATCAGATGATGTTTGTTCAAAGCTCGGTATAGGTAAAGAGAAAGCGTTAAGCATTACTCAGGCAGTCCAAAAGTATGGCAACCTCTCAGGTTTTGTGGAAAGATTTTCTGTGGGAATGAGGAATCCTACAGCGTTCTTCGCCGGGGCTCTTGGAATATCTCCAGAGTGTTTCTTTGCAGGAGTTTGTTGCGGTGGTTTGATTACTCTTCCACTTCAGCTTGTGATTGGGTTTCTCCTTAGAGAACGCCCCATGTTTGCTCTTGCAGCAGTAGCAACTGCAGTGGGAATATGGACAATCTTTCCCTATGTGGTGGCTGCATCTACGGCTTTGTTCCTCTACATTCGCAGTCGCTACTCCACGAAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

347

Amino Acids

37.46

Weight (kDa)

8.91

Isoelectric Point (pI)

32.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 590
AciI CCGC 2 cut(s) 462, 864
AclWI GGATC 3 cut(s) 90, 103, 128
AcoI YGGCCR 1 cut(s) 345
AcuI CTGAAG 2 cut(s) 348, 872
AfiI CCNNNNNNNGG 1 cut(s) 29
AgsI TTSAA 4 cut(s) 51, 73, 298, 693
AjiI CACGTC 1 cut(s) 540
AjnI CCWGG 1 cut(s) 409
AloI GAACNNNNNNTCC 2 cut(s) 210, 242
AluBI AGCT 5 cut(s) 135, 266, 655, 697, 892
AluI AGCT 5 cut(s) 135, 266, 655, 697, 892
Alw26I GTCTC 2 cut(s) 150, 180
AlwI GGATC 3 cut(s) 90, 103, 128
Ama87I CYCGRG 1 cut(s) 177
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 3 cut(s) 452, 938, 989
AsuC2I CCSGG 2 cut(s) 423, 817
AsuHPI GGTGA 2 cut(s) 37, 312
AvaI CYCGRG 1 cut(s) 177
BalI TGGCCA 1 cut(s) 347
BamHI GGATCC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 823
BbsI GAAGAC 1 cut(s) 61
BbvI GCAGC 3 cut(s) 464, 950, 976
BccI CCATC 2 cut(s) 420, 527
BceAI ACGGC 1 cut(s) 1014
BciT130I CCWGG 1 cut(s) 411
BcnI CCSGG 2 cut(s) 423, 817
BcoDI GTCTC 2 cut(s) 150, 180
BfaI CTAG 2 cut(s) 516, 530
BfmI CTRYAG 2 cut(s) 801, 951
BisI GCNGC 3 cut(s) 453, 939, 990
BlsI GCNGC 3 cut(s) 454, 940, 991
Bme1390I CCNGG 3 cut(s) 411, 423, 817
BmeT110I CYCGRG 1 cut(s) 177
BmgBI CACGTC 1 cut(s) 540
BmiI GGNNCC 3 cut(s) 21, 79, 97
BmrFI CCNGG 3 cut(s) 411, 423, 817
BmrI ACTGGG 1 cut(s) 619
BmsI GCATC 3 cut(s) 449, 683, 1001
BmuI ACTGGG 1 cut(s) 619
BpiI GAAGAC 1 cut(s) 61
BpmI CTGGAG 2 cut(s) 64, 819
BpuMI CCSGG 2 cut(s) 423, 817
BsaJI CCNNGG 2 cut(s) 12, 816
BsaWI WCCGGW 1 cut(s) 22
Bsc4I CCNNNNNNNGG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 614
BseBI CCWGG 1 cut(s) 411
BseDI CCNNGG 2 cut(s) 12, 816
BseGI GGATG 2 cut(s) 431, 464
BseLI CCNNNNNNNGG 1 cut(s) 29
BseMII CTCAG 3 cut(s) 546, 746, 774
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 3 cut(s) 464, 950, 976
BshFI GGCC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 4 cut(s) 23, 422, 456, 816
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 150, 180
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 823
Bsp143I GATC 2 cut(s) 95, 120
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 2 cut(s) 462, 864
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 3 cut(s) 547, 745, 773
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 3 cut(s) 21, 79, 97
BspMAI CTGCAG 1 cut(s) 955
BspPI GGATC 3 cut(s) 90, 103, 128
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 2 cut(s) 12, 816
BssMI GATC 2 cut(s) 95, 120
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 1 cut(s) 411
Bst4CI ACNGT 3 cut(s) 280, 595, 639
Bst6I CTCTTC 2 cut(s) 474, 885
BstDEI CTNAG 4 cut(s) 555, 732, 760, 911
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 2 cut(s) 431, 464
BstKTI GATC 2 cut(s) 98, 123
BstMAI GTCTC 2 cut(s) 150, 180
BstMBI GATC 2 cut(s) 95, 120
BstMWI GCNNNNNNNGC 4 cut(s) 812, 938, 944, 998
BstNI CCWGG 1 cut(s) 411
BstSCI CCNGG 3 cut(s) 409, 421, 815
BstSFI CTRYAG 2 cut(s) 801, 951
BstV1I GCAGC 3 cut(s) 464, 950, 976
BstV2I GAAGAC 1 cut(s) 61
BstX2I RGATCY 1 cut(s) 95
BstXI CCANNNNNNTGG 1 cut(s) 749
BstYI RGATCY 1 cut(s) 95
BsuRI GGCC 1 cut(s) 347
BtgI CCRYGG 1 cut(s) 12
BtrI CACGTC 1 cut(s) 540
BtsCI GGATG 2 cut(s) 431, 464
BtsI GCAGTG 1 cut(s) 960
BtsIMutI CAGTG 1 cut(s) 960
CciI TCATGA 1 cut(s) 402
CspCI CAANNNNNGTGG 2 cut(s) 936, 971
CviAII CATG 4 cut(s) 13, 403, 600, 925
DdeI CTNAG 4 cut(s) 555, 732, 760, 911
DpnI GATC 2 cut(s) 97, 122
DpnII GATC 2 cut(s) 95, 120
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 2 cut(s) 474, 885
EarI CTCTTC 2 cut(s) 474, 885
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 823
Eco57I CTGAAG 2 cut(s) 348, 872
Eco88I CYCGRG 1 cut(s) 177
EcoRII CCWGG 1 cut(s) 409
EcoT14I CCWWGG 1 cut(s) 12
EcoT22I ATGCAT 1 cut(s) 388
EcoT38I GRGCYC 1 cut(s) 823
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 4 cut(s) 16, 406, 603, 928
FaqI GGGAC 1 cut(s) 550
FatI CATG 4 cut(s) 12, 402, 599, 924
FblI GTMKAC 1 cut(s) 590
Fnu4HI GCNGC 3 cut(s) 453, 939, 990
FokI GGATG 2 cut(s) 438, 471
FriOI GRGCYC 1 cut(s) 823
Fsp4HI GCNGC 3 cut(s) 453, 939, 990
FspBI CTAG 2 cut(s) 516, 530
GluI GCNGC 3 cut(s) 453, 939, 990
GsuI CTGGAG 2 cut(s) 64, 819
HaeIII GGCC 1 cut(s) 347
HapII CCGG 4 cut(s) 23, 422, 456, 816
Hin1II CATG 4 cut(s) 16, 406, 603, 928
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HinfI GANTC 5 cut(s) 164, 399, 406, 557, 796
HpaI GTTAAC 1 cut(s) 525
HpaII CCGG 4 cut(s) 23, 422, 456, 816
HphI GGTGA 2 cut(s) 37, 312
Hpy166II GTNNAC 5 cut(s) 320, 433, 525, 591, 607
Hpy188I TCNGA 4 cut(s) 169, 367, 570, 679
Hpy188III TCNNGA 7 cut(s) 81, 177, 179, 216, 403, 530, 836
Hpy8I GTNNAC 5 cut(s) 320, 433, 525, 591, 607
HpyAV CCTTC 2 cut(s) 109, 362
HpyCH4III ACNGT 3 cut(s) 280, 595, 639
HpyCH4IV ACGT 2 cut(s) 377, 539
HpyCH4V TGCA 6 cut(s) 386, 419, 851, 938, 953, 992
HpyF10VI GCNNNNNNNGC 4 cut(s) 812, 938, 944, 998
HpyF3I CTNAG 4 cut(s) 555, 732, 760, 911
HpySE526I ACGT 2 cut(s) 377, 539
Hsp92II CATG 4 cut(s) 16, 406, 603, 928
KspAI GTTAAC 1 cut(s) 525
Kzo9I GATC 2 cut(s) 95, 120
LmnI GCTCC 3 cut(s) 83, 580, 671
Lsp1109I GCAGC 3 cut(s) 464, 950, 976
LweI GCATC 3 cut(s) 449, 683, 1001
MaeI CTAG 2 cut(s) 516, 530
MaeII ACGT 2 cut(s) 377, 539
MaeIII GTNAC 1 cut(s) 113
MalI GATC 2 cut(s) 97, 122
MboI GATC 2 cut(s) 95, 120
MboII GAAGA 6 cut(s) 61, 206, 354, 491, 802, 872
MflI RGATCY 1 cut(s) 95
MhlI GDGCHC 1 cut(s) 823
MlsI TGGCCA 1 cut(s) 347
MluCI AATT 1 cut(s) 147
MluNI TGGCCA 1 cut(s) 347
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 6 cut(s) 322, 325, 475, 767, 786, 1019
Mox20I TGGCCA 1 cut(s) 347
Mph1103I ATGCAT 1 cut(s) 388
MscI TGGCCA 1 cut(s) 347
MseI TTAA 6 cut(s) 41, 336, 381, 524, 623, 722
MslI CAYNNNNRTG 1 cut(s) 424
Msp20I TGGCCA 1 cut(s) 347
MspI CCGG 4 cut(s) 23, 422, 456, 816
MspR9I CCNGG 3 cut(s) 411, 423, 817
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 1 cut(s) 411
MwoI GCNNNNNNNGC 4 cut(s) 812, 938, 944, 998
NciI CCSGG 2 cut(s) 423, 817
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 95, 120
NlaIII CATG 4 cut(s) 16, 406, 603, 928
NlaIV GGNNCC 3 cut(s) 21, 79, 97
NsiI ATGCAT 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 177
PagI TCATGA 1 cut(s) 402
PcsI WCGNNNNNNNCGW 1 cut(s) 545
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 4 cut(s) 164, 399, 406, 796
PfoI TCCNGGA 1 cut(s) 409
PkrI GCNGC 3 cut(s) 454, 940, 991
PleI GAGTC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 565
Psp6I CCWGG 1 cut(s) 409
PspGI CCWGG 1 cut(s) 409
PspN4I GGNNCC 3 cut(s) 21, 79, 97
PstI CTGCAG 1 cut(s) 955
PsuI RGATCY 1 cut(s) 95
RseI CAYNNNNRTG 1 cut(s) 424
SaqAI TTAA 6 cut(s) 41, 336, 381, 524, 623, 722
SatI GCNGC 3 cut(s) 453, 939, 990
Sau3AI GATC 2 cut(s) 95, 120
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 3 cut(s) 411, 423, 817
SduI GDGCHC 1 cut(s) 823
SfaNI GCATC 3 cut(s) 449, 683, 1001
SfcI CTRYAG 2 cut(s) 801, 951
Sfr274I CTCGAG 1 cut(s) 177
SlaI CTCGAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 424
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 1 cut(s) 147
SsiI CCGC 2 cut(s) 462, 864
SspMI CTAG 2 cut(s) 516, 530
StyD4I CCNGG 3 cut(s) 409, 421, 815
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 3 cut(s) 280, 595, 639
TaiI ACGT 2 cut(s) 380, 542
TaqI TCGA 1 cut(s) 178
TasI AATT 1 cut(s) 147
TfiI GAWTC 4 cut(s) 164, 399, 406, 796
Tru1I TTAA 6 cut(s) 41, 336, 381, 524, 623, 722
Tru9I TTAA 6 cut(s) 41, 336, 381, 524, 623, 722
TscAI CASTG 1 cut(s) 960
TseI GCWGC 3 cut(s) 452, 938, 989
TspDTI ATGAA 5 cut(s) 207, 219, 223, 345, 391
TspRI CASTG 1 cut(s) 960
XbaI TCTAGA 1 cut(s) 529
XhoI CTCGAG 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 590
XspI CTAG 2 cut(s) 516, 530
Zsp2I ATGCAT 1 cut(s) 388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.