RchiOBHm_Chr6g0284811

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
48127482 .. 48128669
1188 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25543

Sequence Viewer

Length: 303 bp
ATGTACTCAAATATGAAATATCACTCATTTACTGCTGATTGCTTGTCATGCTTTTTTCTGAGTACAGGGTATATCTCCAGAGTGTTTCTTTGCTGGAGTTTGTTTGGGTGGCTTGATCACCCTTCCGATCCAGGTCAGTCCCGTGCGTTCGGGATAGGATTCTTCTTGAGGGAGCGCCCTGTCTTTGCCATAGCTACTGCTACAACAGTTGTGGGCATTTGGACTATTTTCCCTTATGCAGTGGCTGCATTAACAGCATTGTTCCTTTACCTTCGACAACGTTACTCAACATTGTCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

100

Amino Acids

11.42

Weight (kDa)

8.55

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 280
AclWI GGATC 1 cut(s) 122
AfaI GTAC 2 cut(s) 5, 64
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 245
AspLEI GCGC 1 cut(s) 177
AsuHPI GGTGA 1 cut(s) 110
BbvI GCAGC 1 cut(s) 232
BciT130I CCWGG 1 cut(s) 132
BclI TGATCA 1 cut(s) 115
BfoI RGCGCY 1 cut(s) 178
BisI GCNGC 1 cut(s) 246
BlsI GCNGC 1 cut(s) 247
Bme1390I CCNGG 1 cut(s) 132
BmrFI CCNGG 1 cut(s) 132
BpmI CTGGAG 2 cut(s) 61, 115
BpuEI CTTGAG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 124
BsmFI GGGAC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 115, 127
BspCNI CTCAG 1 cut(s) 51
BspPI GGATC 1 cut(s) 122
BssMI GATC 2 cut(s) 115, 127
Bst2UI CCWGG 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 208
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 1 cut(s) 59
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 118, 130
BstMBI GATC 2 cut(s) 115, 127
BstMWI GCNNNNNNNGC 3 cut(s) 48, 245, 254
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstV1I GCAGC 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 245
CfoI GCGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 4, 63
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 1 cut(s) 48
CviJI RGCY 3 cut(s) 112, 194, 245
CviKI_1 RGCY 3 cut(s) 112, 194, 245
CviQI GTAC 2 cut(s) 4, 63
DdeI CTNAG 1 cut(s) 59
DpnI GATC 2 cut(s) 117, 129
DpnII GATC 2 cut(s) 115, 127
EcoRII CCWGG 1 cut(s) 130
FaeI CATG 1 cut(s) 51
FaiI YATR 5 cut(s) 14, 49, 72, 191, 237
FaqI GGGAC 1 cut(s) 124
FatI CATG 1 cut(s) 47
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 246
GlaI GCGC 1 cut(s) 176
GluI GCNGC 1 cut(s) 246
GsuI CTGGAG 2 cut(s) 61, 115
HaeII RGCGCY 1 cut(s) 178
HhaI GCGC 1 cut(s) 177
Hin1II CATG 1 cut(s) 51
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 1 cut(s) 159
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 60, 127, 298
Hpy188III TCNNGA 3 cut(s) 78, 151, 166
HpyAV CCTTC 2 cut(s) 132, 281
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 239, 248
HpyF10VI GCNNNNNNNGC 3 cut(s) 48, 245, 254
HpyF3I CTNAG 1 cut(s) 59
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 1 cut(s) 51
HspAI GCGC 1 cut(s) 175
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 115, 127
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 6 cut(s) 51, 79, 91, 117, 144, 192
Lsp1109I GCAGC 1 cut(s) 232
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 281
MalI GATC 2 cut(s) 117, 129
MboI GATC 2 cut(s) 115, 127
MboII GAAGA 1 cut(s) 154
MnlI CCTC 1 cut(s) 162
MseI TTAA 1 cut(s) 251
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 3 cut(s) 48, 245, 254
NdeII GATC 2 cut(s) 115, 127
NlaIII CATG 1 cut(s) 51
PfeI GAWTC 1 cut(s) 159
PkrI GCNGC 1 cut(s) 247
Psp1406I AACGTT 1 cut(s) 280
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PstNI CAGNNNCTG 1 cut(s) 245
RsaI GTAC 2 cut(s) 5, 64
RsaNI GTAC 2 cut(s) 4, 63
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 246
Sau3AI GATC 2 cut(s) 115, 127
ScrFI CCNGG 1 cut(s) 132
SetI ASST 4 cut(s) 136, 196, 273, 283
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 130
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 274
TatI WGTACW 2 cut(s) 3, 62
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 246
TseI GCWGC 1 cut(s) 245
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.