Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004444

Physical Location & Seq

Genomic Coordinates Reverse (-)

21594192 .. 21595875

Gene Structure 1684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012717

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGTCTCTAATAGCGGATTTTACACCTGGGTCTTCTCTATTCCCACACACCTCAGAACCCAAATTTTCAAACCGACAGCTTATTAGGCACTCAAGCTGTTTCAATGTCAAACACAGATTGCTGGTGAATGGGAAACAGTGTGGGCTAGTTTCCCAGCTCTTCAGACCCCAAACGTTCAGGATTAGAAGCTTTTCGAAGGAGGAGGATACAGAAAATGAAAATGATGAGGCTGCAATGTCTAATGACATTCTGAATGGGCAAGATGGGATTGATGATGAGCTGCTTGGAAATGTTAAAGTTACTCAAACTACTACAGAAAGTTCATTTCTGGCTAAAATAGCAATTGCACTGGGAATAGCTGCAACAGTTACATTGATATCTATTAGCACCAAGGGTCCCACTCTTGGATCATCGAATGGGCTTCAGTTCTTGCCAGAAAGCTCATCCTCTTCAGCAATGGCGGCAGCCCCATTTGGTTTCACTTTCAAAGCTTTTGGCTACAGCATTGTTCTTCCAGAATATGCACCAGGTTCCCTATTCTTCACAGTGCAAGTTGTGGTTCTTGGTGGACCTGCTTTTGGTTGCTTATGGCTGCAGGGTTTGGGCTTTTCATCAGTGAAGACTGAAGAGGCTCTAAATATATGGCTCTGTCCTCTAATCTGGTTGGCATATCTTTGGCCCGGAGGCTATCTTTGGATGGGACCTGGCAGTCATTTGCTGAATCTTTCTCGAGAAATGCTCCGTACATTGTATCTACAACTCTTTGGGTGTATTGGGGAGTATGCATTAATGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

266

Amino Acids

28.91

Weight (kDa)

5.58

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13150 AT4G13150 AT4G13150 AT4G13150 AT4G13150
fragaria_vesca	FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010
malus_domestica	MD05G1174800.v1.1
prunus_persica	Prupe.8G202300_v2.0.a1 Prupe.8G202300_v2.0.a1 Prupe.8G202300_v2.0.a1
pyrus_communis	pycom05g16170
rosa_chinensis	RchiOBHm_Chr6g0284801 RchiOBHm_Chr6g0284811
rosa_laevigata	RLG00000012714 RLG00000012716 RLG00000012717
rosa_multiflora	Rmu_sc0000686.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184350
rosa_rugosa	Rorug06G0167100 Rorug06G0167100
rosa_samantha	Rh6AG279600 Rh6BG279800 Rh6CG282000 Rh6DG274900
rosa_wichuraiana	Rw6G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	708
Acc36I	ACCTGC	1 cut(s)	580
AciI	CCGC	2 cut(s)	14, 461
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	62
AcuI	CTGAAG	4 cut(s)	145, 407, 435, 645
AfaI	GTAC	1 cut(s)	745
AfiI	CCNNNNNNNGG	2 cut(s)	404, 578
AgsI	TTSAA	3 cut(s)	69, 103, 487
AjnI	CCWGG	3 cut(s)	25, 526, 703
AluBI	AGCT	8 cut(s)	79, 96, 157, 189, 280, 359, 441, 491
AluI	AGCT	8 cut(s)	79, 96, 157, 189, 280, 359, 441, 491
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	415
Ama87I	CYCGRG	1 cut(s)	729
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	5 cut(s)	230, 280, 359, 464, 592
ApoI	RAATTY	1 cut(s)	62
AseI	ATTAAT	1 cut(s)	788
Asp700I	GAANNNNTTC	1 cut(s)	190
AspS9I	GGNCC	4 cut(s)	395, 569, 678, 701
AsuC2I	CCSGG	1 cut(s)	681
AsuHPI	GGTGA	1 cut(s)	136
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	729
AvaII	GGWCC	3 cut(s)	395, 569, 701
BbsI	GAAGAC	2 cut(s)	24, 626
BbvI	GCAGC	5 cut(s)	217, 267, 346, 476, 579
BccI	CCATC	2 cut(s)	257, 691
BciT130I	CCWGG	3 cut(s)	27, 528, 705
BciVI	GTATCC	1 cut(s)	199
BcnI	CCSGG	1 cut(s)	681
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	1 cut(s)	146
BfmI	CTRYAG	3 cut(s)	312, 499, 593
BfuAI	ACCTGC	1 cut(s)	580
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	6 cut(s)	231, 281, 360, 462, 465, 593
BlsI	GCNGC	6 cut(s)	232, 282, 361, 463, 466, 594
Bme1390I	CCNGG	4 cut(s)	27, 528, 681, 705
Bme18I	GGWCC	3 cut(s)	395, 569, 701
BmeT110I	CYCGRG	1 cut(s)	729
BmgT120I	GGNCC	4 cut(s)	395, 569, 678, 701
BmiI	GGNNCC	4 cut(s)	396, 397, 532, 702
BmrFI	CCNGG	4 cut(s)	27, 528, 681, 705
BmrI	ACTGGG	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	2 cut(s)	24, 626
BplI	GAGNNNNNCTC	2 cut(s)	723, 755
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	681
BsaJI	CCNNGG	2 cut(s)	26, 390
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 578
Bse1I	ACTGG	1 cut(s)	354
Bse3DI	GCAATG	2 cut(s)	240, 462
BseBI	CCWGG	3 cut(s)	27, 528, 705
BseDI	CCNNGG	2 cut(s)	26, 390
BseGI	GGATG	2 cut(s)	443, 702
BseLI	CCNNNNNNNGG	2 cut(s)	404, 578
BseMI	GCAATG	2 cut(s)	240, 462
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	5 cut(s)	217, 267, 346, 476, 579
BseYI	CCCAGC	1 cut(s)	153
BshFI	GGCC	1 cut(s)	679
BsiHKCI	CYCGRG	1 cut(s)	729
BsiSI	CCGG	1 cut(s)	681
BslFI	GGGAC	2 cut(s)	381, 714
BslI	CCNNNNNNNGG	2 cut(s)	404, 578
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	381, 714
BsnI	GGCC	1 cut(s)	679
BsoBI	CYCGRG	1 cut(s)	729
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	2 cut(s)	407, 792
BspACI	CCGC	2 cut(s)	14, 461
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	1 cut(s)	65
BspLI	GGNNCC	4 cut(s)	396, 397, 532, 702
BspMAI	CTGCAG	1 cut(s)	597
BspMI	ACCTGC	1 cut(s)	580
BspPI	GGATC	1 cut(s)	415
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	240, 462
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	2 cut(s)	26, 390
BssMI	GATC	2 cut(s)	407, 792
BssT1I	CCWWGG	1 cut(s)	390
Bst2UI	CCWGG	3 cut(s)	27, 528, 705
Bst4CI	ACNGT	3 cut(s)	138, 367, 547
Bst6I	CTCTTC	3 cut(s)	164, 454, 621
BstBI	TTCGAA	1 cut(s)	194
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	443, 702
BstKTI	GATC	2 cut(s)	410, 795
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	407, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 338, 461
BstNI	CCWGG	3 cut(s)	27, 528, 705
BstSCI	CCNGG	4 cut(s)	25, 526, 679, 703
BstSFI	CTRYAG	3 cut(s)	312, 499, 593
BstV1I	GCAGC	5 cut(s)	217, 267, 346, 476, 579
BstV2I	GAAGAC	2 cut(s)	24, 626
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	2 cut(s)	443, 702
BtsIMutI	CAGTG	4 cut(s)	143, 347, 552, 621
BveI	ACCTGC	1 cut(s)	580
Cfr13I	GGNCC	4 cut(s)	395, 569, 678, 701
CsiI	ACCWGGT	1 cut(s)	526
Csp6I	GTAC	1 cut(s)	744
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	2 cut(s)	409, 794
DpnII	GATC	2 cut(s)	407, 792
DrdI	GACNNNNNNGTC	1 cut(s)	708
DseDI	GACNNNNNNGTC	1 cut(s)	708
Eam1104I	CTCTTC	3 cut(s)	164, 454, 621
EarI	CTCTTC	3 cut(s)	164, 454, 621
Eco130I	CCWWGG	1 cut(s)	390
Eco32I	GATATC	1 cut(s)	378
Eco47I	GGWCC	3 cut(s)	395, 569, 701
Eco57I	CTGAAG	4 cut(s)	145, 407, 435, 645
Eco88I	CYCGRG	1 cut(s)	729
EcoO109I	RGGNCCY	2 cut(s)	395, 701
EcoRII	CCWGG	3 cut(s)	25, 526, 703
EcoRV	GATATC	1 cut(s)	378
EcoT14I	CCWWGG	1 cut(s)	390
EcoT22I	ATGCAT	1 cut(s)	787
ErhI	CCWWGG	1 cut(s)	390
FaiI	YATR	6 cut(s)	522, 589, 641, 643, 670, 783
FaqI	GGGAC	2 cut(s)	381, 714
Fnu4HI	GCNGC	6 cut(s)	231, 281, 360, 462, 465, 593
FokI	GGATG	2 cut(s)	430, 709
Fsp4HI	GCNGC	6 cut(s)	231, 281, 360, 462, 465, 593
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	6 cut(s)	231, 281, 360, 462, 465, 593
GsaI	CCCAGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	1 cut(s)	681
HindIII	AAGCTT	2 cut(s)	187, 489
HinfI	GANTC	1 cut(s)	721
HpaII	CCGG	1 cut(s)	681
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	569
Hpy188I	TCNGA	3 cut(s)	55, 164, 252
Hpy188III	TCNNGA	4 cut(s)	178, 515, 729, 731
Hpy8I	GTNNAC	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	190
HpyCH4III	ACNGT	3 cut(s)	138, 367, 547
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	7 cut(s)	233, 347, 362, 524, 550, 595, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 338, 461
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	173
KflI	GGGWCCC	1 cut(s)	395
Kzo9I	GATC	2 cut(s)	407, 792
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	1 cut(s)	744
Lsp1109I	GCAGC	5 cut(s)	217, 267, 346, 476, 579
MabI	ACCWGGT	1 cut(s)	526
MaeI	CTAG	1 cut(s)	146
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	298, 367
MalI	GATC	2 cut(s)	409, 794
MboI	GATC	2 cut(s)	407, 792
MboII	GAAGA	7 cut(s)	24, 151, 441, 503, 532, 631, 638
MfeI	CAATTG	1 cut(s)	342
MluCI	AATT	2 cut(s)	62, 342
MnlI	CCTC	8 cut(s)	61, 193, 196, 220, 457, 622, 663, 677
Mph1103I	ATGCAT	1 cut(s)	787
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	294, 788
MspI	CCGG	1 cut(s)	681
MspR9I	CCNGG	4 cut(s)	27, 528, 681, 705
MunI	CAATTG	1 cut(s)	342
MvaI	CCWGG	3 cut(s)	27, 528, 705
MwoI	GCNNNNNNNGC	3 cut(s)	85, 338, 461
NciI	CCSGG	1 cut(s)	681
NdeII	GATC	2 cut(s)	407, 792
NlaIV	GGNNCC	4 cut(s)	396, 397, 532, 702
NsiI	ATGCAT	1 cut(s)	787
NspV	TTCGAA	1 cut(s)	194
PaeR7I	CTCGAG	1 cut(s)	729
PciSI	GCTCTTC	1 cut(s)	164
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	721
PkrI	GCNGC	6 cut(s)	232, 282, 361, 463, 466, 594
PpuMI	RGGWCCY	2 cut(s)	395, 701
PshBI	ATTAAT	1 cut(s)	788
Psp1406I	AACGTT	1 cut(s)	173
Psp5II	RGGWCCY	2 cut(s)	395, 701
Psp6I	CCWGG	3 cut(s)	25, 526, 703
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	3 cut(s)	25, 526, 703
PspN4I	GGNNCC	4 cut(s)	396, 397, 532, 702
PspPI	GGNCC	4 cut(s)	395, 569, 678, 701
PspPPI	RGGWCCY	2 cut(s)	395, 701
PstI	CTGCAG	1 cut(s)	597
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	294, 788
SatI	GCNGC	6 cut(s)	231, 281, 360, 462, 465, 593
Sau3AI	GATC	2 cut(s)	407, 792
Sau96I	GGNCC	4 cut(s)	395, 569, 678, 701
ScrFI	CCNGG	4 cut(s)	27, 528, 681, 705
SexAI	ACCWGGT	1 cut(s)	526
SfcI	CTRYAG	3 cut(s)	312, 499, 593
Sfr274I	CTCGAG	1 cut(s)	729
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	3 cut(s)	395, 569, 701
SlaI	CTCGAG	1 cut(s)	729
SmlI	CTYRAG	2 cut(s)	91, 729
SmoI	CTYRAG	2 cut(s)	91, 729
Sse9I	AATT	2 cut(s)	62, 342
SsiI	CCGC	2 cut(s)	14, 461
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	4 cut(s)	25, 526, 679, 703
StyI	CCWWGG	1 cut(s)	390
TaaI	ACNGT	3 cut(s)	138, 367, 547
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	3 cut(s)	194, 413, 730
TasI	AATT	2 cut(s)	62, 342
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	721
Tru1I	TTAA	2 cut(s)	294, 788
Tru9I	TTAA	2 cut(s)	294, 788
TscAI	CASTG	4 cut(s)	143, 354, 552, 621
TseI	GCWGC	5 cut(s)	230, 280, 359, 464, 592
TspDTI	ATGAA	3 cut(s)	231, 312, 600
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	4 cut(s)	143, 354, 552, 621
VpaK11BI	GGWCC	3 cut(s)	395, 569, 701
VspI	ATTAAT	1 cut(s)	788
XapI	RAATTY	1 cut(s)	62
XhoI	CTCGAG	1 cut(s)	729
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	1 cut(s)	146
Zsp2I	ATGCAT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.