Rw6G024050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0004444
Physical Location & Seq
Forward (+)
46832210 .. 46837163
4954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G024050.1

Sequence Viewer

Length: 987 bp
ATGTCTCTAATAGCGGATTTTGCACCTGGGTCTTCTCTATTCCCACACGCCCCAAAACCCAAATCTTCAAACCGACAACTTATTAGGCATTCAAGCTGTTTCAATGTCAAACACAGATTGCTAGTGAATGGGAAACAATTTGCTTGGAATGTTAAAGTTACTCAGACTACTACAGAAAATTTATTTCTGGCTAAAATAGCAATTGCACTGGGAATAGCTGCAACAGTTACATTGATATCTATTAGCATCAAGGGTCCCACTCTTGGATCATCGAATGGGCTTCAGTTCTTGCCAGAAAGCTCATCCTCTTCAGCAATGGCGGCGGCCCCTGTTAGTTTCACTTTCAAAGCTTTTGGCTACAGCATTGTTCTTCCAGAATATGCACCAGGGTGGATCTACTTTTGGTTGCTTATGGCTGCAGGGTTTGGGCTTTTCATCAGTGAAGAGGCTCTAAATATATGGGTTGGCATATCTTTAGCCCGGAGGCTATCTTTGGATGGGACCTGGCAGTCATTTGCTGAATCTTTCTCGAGAAATGCTCCGTACATTGTATCTACAACTCTTTGGGTGTATTGGGGAGTATGCATTAGTGATCTAATACCTTTTTATATGGGGAAGCTTTTTAGACAATCCAGGGTGTCTGATGATATTTTTTCAAAGTTAGGGATTGGCAAAGAGAAAGCTTTAAGCATAACCCGTGCAGTGCAAAGATATGGCAACCTTATTGGTTTTGTTGAACGCTTTTCCCTTGGAGTGAGAAATCCAACAGCTTTTCTAGCAGGGACCTTAGGTATATCTCCAGAGTGTTTCTTTGCTGGAGTTTGTTTGGGTGGCTTGATCACCCTTCCGATCCAGGTCAGCCCTGTCTTTGCCCTAGCTACTGTTGCAACAGTTGTGGGCATTTGGACTATTTTCCCTTATGCAGTGGCTACATCAACAGCATTGTTCCTTTACCTTCGACAACGTTACTCAACGACGTCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

328

Amino Acids

35.75

Weight (kDa)

9.64

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 185 - 284 7.2e-09 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 508
AatII GACGTC 1 cut(s) 980
AciI CCGC 3 cut(s) 14, 320, 323
AclI AACGTT 1 cut(s) 964
AclWI GGATC 3 cut(s) 274, 401, 844
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 2 cut(s) 266, 294
AcyI GRCGYC 1 cut(s) 977
AfaI GTAC 1 cut(s) 545
AfiI CCNNNNNNNGG 1 cut(s) 263
AgsI TTSAA 6 cut(s) 69, 93, 103, 346, 657, 737
AjnI CCWGG 5 cut(s) 25, 385, 503, 632, 852
AleI CACNNNNGTG 1 cut(s) 388
AluBI AGCT 8 cut(s) 96, 218, 300, 350, 619, 683, 770, 878
AluI AGCT 8 cut(s) 96, 218, 300, 350, 619, 683, 770, 878
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 3 cut(s) 274, 401, 844
Ama87I CYCGRG 1 cut(s) 529
AoxI GGCC 1 cut(s) 324
ApeKI GCWGC 2 cut(s) 218, 416
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 254, 325, 501, 783
AsuC2I CCSGG 1 cut(s) 481
AsuHPI GGTGA 1 cut(s) 832
AvaI CYCGRG 1 cut(s) 529
AvaII GGWCC 3 cut(s) 254, 501, 783
AxyI CCTNAGG 1 cut(s) 787
BbsI GAAGAC 1 cut(s) 24
BbvI GCAGC 2 cut(s) 205, 403
BccI CCATC 1 cut(s) 491
BciT130I CCWGG 5 cut(s) 27, 387, 505, 634, 854
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 1 cut(s) 481
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 3 cut(s) 122, 776, 875
BfmI CTRYAG 3 cut(s) 171, 358, 417
BisI GCNGC 4 cut(s) 219, 321, 324, 417
BlsI GCNGC 4 cut(s) 220, 322, 325, 418
Bme1390I CCNGG 6 cut(s) 27, 387, 481, 505, 634, 854
Bme18I GGWCC 3 cut(s) 254, 501, 783
BmeT110I CYCGRG 1 cut(s) 529
BmgT120I GGNCC 4 cut(s) 254, 325, 501, 783
BmiI GGNNCC 5 cut(s) 255, 256, 327, 502, 784
BmrFI CCNGG 6 cut(s) 27, 387, 481, 505, 634, 854
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 218
BpiI GAAGAC 1 cut(s) 24
BplI GAGNNNNNCTC 2 cut(s) 523, 555
BpmI CTGGAG 2 cut(s) 783, 837
BpuMI CCSGG 1 cut(s) 481
BsaHI GRCGYC 1 cut(s) 977
BsaJI CCNNGG 4 cut(s) 26, 386, 633, 748
Bsc4I CCNNNNNNNGG 1 cut(s) 263
Bse1I ACTGG 1 cut(s) 213
Bse21I CCTNAGG 1 cut(s) 787
Bse3DI GCAATG 1 cut(s) 321
BseBI CCWGG 5 cut(s) 27, 387, 505, 634, 854
BseDI CCNNGG 4 cut(s) 26, 386, 633, 748
BseGI GGATG 2 cut(s) 302, 502
BseLI CCNNNNNNNGG 1 cut(s) 263
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 213
BseXI GCAGC 2 cut(s) 205, 403
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 1 cut(s) 326
BsiHKCI CYCGRG 1 cut(s) 529
BsiSI CCGG 1 cut(s) 481
BslFI GGGAC 3 cut(s) 240, 514, 796
BslI CCNNNNNNNGG 1 cut(s) 263
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 240, 514, 796
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 1 cut(s) 326
BsoBI CYCGRG 1 cut(s) 529
Bsp143I GATC 5 cut(s) 266, 393, 592, 837, 849
BspACI CCGC 3 cut(s) 14, 320, 323
BspANI GGCC 1 cut(s) 326
BspCNI CTCAG 1 cut(s) 175
BspLI GGNNCC 5 cut(s) 255, 256, 327, 502, 784
BspMAI CTGCAG 1 cut(s) 421
BspPI GGATC 3 cut(s) 274, 401, 844
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 213
BssECI CCNNGG 4 cut(s) 26, 386, 633, 748
BssMI GATC 5 cut(s) 266, 393, 592, 837, 849
BssNI GRCGYC 1 cut(s) 977
BssT1I CCWWGG 1 cut(s) 748
Bst2UI CCWGG 5 cut(s) 27, 387, 505, 634, 854
Bst4CI ACNGT 3 cut(s) 226, 883, 892
Bst6I CTCTTC 2 cut(s) 313, 438
BstACI GRCGYC 1 cut(s) 977
BstDEI CTNAG 2 cut(s) 162, 787
BstF5I GGATG 2 cut(s) 302, 502
BstKTI GATC 5 cut(s) 269, 396, 595, 840, 852
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 5 cut(s) 266, 393, 592, 837, 849
BstMWI GCNNNNNNNGC 5 cut(s) 20, 197, 320, 776, 884
BstNI CCWGG 5 cut(s) 27, 387, 505, 634, 854
BstSCI CCNGG 6 cut(s) 25, 385, 479, 503, 632, 852
BstSFI CTRYAG 3 cut(s) 171, 358, 417
BstV1I GCAGC 2 cut(s) 205, 403
BstV2I GAAGAC 1 cut(s) 24
BstX2I RGATCY 1 cut(s) 393
BstYI RGATCY 1 cut(s) 393
Bsu36I CCTNAGG 1 cut(s) 787
BsuRI GGCC 1 cut(s) 326
BtsCI GGATG 2 cut(s) 302, 502
BtsI GCAGTG 2 cut(s) 708, 930
BtsIMutI CAGTG 4 cut(s) 206, 445, 708, 930
Cfr13I GGNCC 4 cut(s) 254, 325, 501, 783
Csp6I GTAC 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 876, 911
CviQI GTAC 1 cut(s) 544
DdeI CTNAG 2 cut(s) 162, 787
DpnI GATC 5 cut(s) 268, 395, 594, 839, 851
DpnII GATC 5 cut(s) 266, 393, 592, 837, 849
DrdI GACNNNNNNGTC 1 cut(s) 508
DseDI GACNNNNNNGTC 1 cut(s) 508
Eam1104I CTCTTC 2 cut(s) 313, 438
EarI CTCTTC 2 cut(s) 313, 438
Eco130I CCWWGG 1 cut(s) 748
Eco32I GATATC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 254, 501, 783
Eco57I CTGAAG 2 cut(s) 266, 294
Eco81I CCTNAGG 1 cut(s) 787
Eco88I CYCGRG 1 cut(s) 529
EcoO109I RGGNCCY 3 cut(s) 254, 501, 783
EcoRII CCWGG 5 cut(s) 25, 385, 503, 632, 852
EcoRV GATATC 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 748
EcoT22I ATGCAT 1 cut(s) 587
ErhI CCWWGG 1 cut(s) 748
FaqI GGGAC 3 cut(s) 240, 514, 796
FbaI TGATCA 1 cut(s) 837
Fnu4HI GCNGC 4 cut(s) 219, 321, 324, 417
FokI GGATG 2 cut(s) 289, 509
Fsp4HI GCNGC 4 cut(s) 219, 321, 324, 417
FspBI CTAG 3 cut(s) 122, 776, 875
GluI GCNGC 4 cut(s) 219, 321, 324, 417
GsuI CTGGAG 2 cut(s) 783, 837
HaeIII GGCC 1 cut(s) 326
HapII CCGG 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 977
HindIII AAGCTT 3 cut(s) 348, 617, 681
HinfI GANTC 1 cut(s) 521
HpaII CCGG 1 cut(s) 481
HphI GGTGA 1 cut(s) 832
Hpy188I TCNGA 4 cut(s) 165, 643, 849, 982
Hpy188III TCNNGA 4 cut(s) 374, 529, 531, 800
Hpy99I CGWCG 1 cut(s) 979
HpyAV CCTTC 2 cut(s) 854, 965
HpyCH4III ACNGT 3 cut(s) 226, 883, 892
HpyCH4IV ACGT 2 cut(s) 964, 977
HpyF10VI GCNNNNNNNGC 5 cut(s) 20, 197, 320, 776, 884
HpyF3I CTNAG 2 cut(s) 162, 787
HpySE526I ACGT 2 cut(s) 964, 977
Hsp92I GRCGYC 1 cut(s) 977
KflI GGGWCCC 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 5 cut(s) 266, 393, 592, 837, 849
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 2 cut(s) 205, 403
LweI GCATC 1 cut(s) 255
MaeI CTAG 3 cut(s) 122, 776, 875
MaeII ACGT 2 cut(s) 964, 977
MaeIII GTNAC 3 cut(s) 157, 226, 965
MalI GATC 5 cut(s) 268, 395, 594, 839, 851
MboI GATC 5 cut(s) 266, 393, 592, 837, 849
MboII GAAGA 5 cut(s) 24, 57, 300, 362, 455
MfeI CAATTG 1 cut(s) 201
MflI RGATCY 1 cut(s) 393
MluCI AATT 3 cut(s) 137, 178, 201
MmeI TCCRAC 1 cut(s) 788
MnlI CCTC 3 cut(s) 316, 439, 477
Mph1103I ATGCAT 1 cut(s) 587
MseI TTAA 2 cut(s) 153, 686
MslI CAYNNNNRTG 1 cut(s) 388
MspI CCGG 1 cut(s) 481
MspR9I CCNGG 6 cut(s) 27, 387, 481, 505, 634, 854
MunI CAATTG 1 cut(s) 201
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 5 cut(s) 27, 387, 505, 634, 854
MwoI GCNNNNNNNGC 5 cut(s) 20, 197, 320, 776, 884
NciI CCSGG 1 cut(s) 481
NdeII GATC 5 cut(s) 266, 393, 592, 837, 849
NlaIV GGNNCC 5 cut(s) 255, 256, 327, 502, 784
NsiI ATGCAT 1 cut(s) 587
OliI CACNNNNGTG 1 cut(s) 388
PaeR7I CTCGAG 1 cut(s) 529
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 4 cut(s) 220, 322, 325, 418
PpuMI RGGWCCY 3 cut(s) 254, 501, 783
Psp1406I AACGTT 1 cut(s) 964
Psp5II RGGWCCY 3 cut(s) 254, 501, 783
Psp6I CCWGG 5 cut(s) 25, 385, 503, 632, 852
PspGI CCWGG 5 cut(s) 25, 385, 503, 632, 852
PspN4I GGNNCC 5 cut(s) 255, 256, 327, 502, 784
PspPI GGNCC 4 cut(s) 254, 325, 501, 783
PspPPI RGGWCCY 3 cut(s) 254, 501, 783
PstI CTGCAG 1 cut(s) 421
PsuI RGATCY 1 cut(s) 393
RsaI GTAC 1 cut(s) 545
RsaNI GTAC 1 cut(s) 544
RseI CAYNNNNRTG 1 cut(s) 388
SaqAI TTAA 2 cut(s) 153, 686
SatI GCNGC 4 cut(s) 219, 321, 324, 417
Sau3AI GATC 5 cut(s) 266, 393, 592, 837, 849
Sau96I GGNCC 4 cut(s) 254, 325, 501, 783
ScrFI CCNGG 6 cut(s) 27, 387, 481, 505, 634, 854
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 3 cut(s) 171, 358, 417
Sfr274I CTCGAG 1 cut(s) 529
SinI GGWCC 3 cut(s) 254, 501, 783
SlaI CTCGAG 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 388
SmlI CTYRAG 1 cut(s) 529
SmoI CTYRAG 1 cut(s) 529
Sse9I AATT 3 cut(s) 137, 178, 201
SsiI CCGC 3 cut(s) 14, 320, 323
SspMI CTAG 3 cut(s) 122, 776, 875
StyD4I CCNGG 6 cut(s) 25, 385, 479, 503, 632, 852
StyI CCWWGG 1 cut(s) 748
TaaI ACNGT 3 cut(s) 226, 883, 892
TaiI ACGT 2 cut(s) 967, 980
TaqI TCGA 3 cut(s) 272, 530, 958
TasI AATT 3 cut(s) 137, 178, 201
TauI GCSGC 2 cut(s) 323, 326
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 153, 686
Tru9I TTAA 2 cut(s) 153, 686
TscAI CASTG 4 cut(s) 213, 445, 708, 930
TseI GCWGC 2 cut(s) 218, 416
TspDTI ATGAA 1 cut(s) 424
TspGWI ACGGA 1 cut(s) 531
TspRI CASTG 4 cut(s) 213, 445, 708, 930
VpaK11BI GGWCC 3 cut(s) 254, 501, 783
XapI RAATTY 1 cut(s) 178
XhoI CTCGAG 1 cut(s) 529
XspI CTAG 3 cut(s) 122, 776, 875
ZraI GACGTC 1 cut(s) 978
Zsp2I ATGCAT 1 cut(s) 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.