RchiOBHm_Chr6g0284801

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0004444
Physical Location & Seq
Forward (+)
48123397 .. 48127480
4084 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25542

Sequence Viewer

Length: 960 bp
ATGTCTCTAATAGCGGATTTTGCACCTGGGTCTTGTCTATTCCCACACACCCCAAAACCCAAATCTTCAAACCGACTACTTATTAGGCATTCAAGCTGTTTCAATGTCAAACACAGATTGCTGGTGAATGGGAAACAGTGTGGGCTAGTTTCCCAGCTCTTCAGACCCCAAACGTTCAGGATTAGAAGCTTTTCAAAGGAGGAGGATACAGAAAATGAAAGTGATGAGGCTGCAATGTCTAATGACATTCTGAATGGGCAAGATGGGATTGATGATGAGCTGCTTGGAAATGTTAAAGTTACTCAAACTACTACAGAAAGTTCATTTCTGGCTAAAATAGCAATTGCACTGGGAATAGCTGCAACAATCACATTGATATCTATTAGCACCAAGGGTCCCACTCTTGGATCATCGAATGGGCTTCAGTTCTTGCCAGAAAGCTCATCCTCTTCAGCAATGGCGGCGGCCCCAGTTGGTTTCACTTTCAAAGCTTTTGGCTACAGCATTGTTCTTCCAGAATATGCACCAGGGTGGACCTACTTTTGGTTGCTTATGGCTGCAGGGTTTGGGCTTTTCATCAGTGAAGAGGCTCTAAATATATGGGTTGGCATATCTTTGGCCCGGAGGCTATCTTTGGATGGGACCTGGCAGTCATTTGCTGAATCTTTCTCGAGAAATGCTCCATACATTGTATCTACAACTCTTTGGGTGTATTGGGGAGTATGCATTAATGATCTAATACATTTTTATATGGGGAAGCTTTTTAGACAATCCAGGGCTTCTGATGATATTTTTTCAAAGTTAGGGATTGGCAAAGAGAAAGCTTTAAGCATAACCCGTGCAGTGCAAAGATATGGCAACCTCATTGGTTTTGTTGAACGCTTTTCCCTTGGAATGAGAAATCCAACAGCTTTTCTAGCCGGGACCTTAGTAAGTTATCTTGAATACATGCACACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SNARE_assoc

Protein Analysis

319

Amino Acids

35.14

Weight (kDa)

8.29

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 649
AciI CCGC 3 cut(s) 14, 461, 464
AclI AACGTT 1 cut(s) 173
AclWI GGATC 1 cut(s) 415
AcuI CTGAAG 3 cut(s) 145, 407, 435
AfiI CCNNNNNNNGG 2 cut(s) 404, 543
AgsI TTSAA 8 cut(s) 69, 93, 103, 195, 487, 798, 878, 944
AjnI CCWGG 4 cut(s) 25, 526, 644, 773
AleI CACNNNNGTG 1 cut(s) 529
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 415
Ama87I CYCGRG 1 cut(s) 670
AoxI GGCC 2 cut(s) 465, 618
ApeKI GCWGC 4 cut(s) 230, 280, 359, 557
AseI ATTAAT 1 cut(s) 729
Asp700I GAANNNNTTC 1 cut(s) 190
AspS9I GGNCC 6 cut(s) 395, 466, 534, 619, 642, 924
AsuC2I CCSGG 2 cut(s) 622, 922
AsuHPI GGTGA 1 cut(s) 136
AvaI CYCGRG 1 cut(s) 670
AvaII GGWCC 4 cut(s) 395, 534, 642, 924
BbvI GCAGC 4 cut(s) 217, 267, 346, 544
BccI CCATC 2 cut(s) 257, 632
BciT130I CCWGG 4 cut(s) 27, 528, 646, 775
BciVI GTATCC 1 cut(s) 199
BcnI CCSGG 2 cut(s) 622, 922
BcoDI GTCTC 1 cut(s) 9
BfaI CTAG 2 cut(s) 146, 917
BfmI CTRYAG 3 cut(s) 312, 499, 558
BfuI GTATCC 1 cut(s) 199
BisI GCNGC 6 cut(s) 231, 281, 360, 462, 465, 558
BlsI GCNGC 6 cut(s) 232, 282, 361, 463, 466, 559
Bme1390I CCNGG 6 cut(s) 27, 528, 622, 646, 775, 922
Bme18I GGWCC 4 cut(s) 395, 534, 642, 924
BmeT110I CYCGRG 1 cut(s) 670
BmgT120I GGNCC 6 cut(s) 395, 466, 534, 619, 642, 924
BmiI GGNNCC 5 cut(s) 396, 397, 468, 643, 925
BmrFI CCNGG 6 cut(s) 27, 528, 622, 646, 775, 922
BmrI ACTGGG 2 cut(s) 359, 464
BmuI ACTGGG 2 cut(s) 359, 464
BplI GAGNNNNNCTC 2 cut(s) 664, 696
BpuMI CCSGG 2 cut(s) 622, 922
BsaJI CCNNGG 5 cut(s) 26, 390, 527, 774, 889
Bsc4I CCNNNNNNNGG 2 cut(s) 404, 543
Bse1I ACTGG 2 cut(s) 354, 470
Bse3DI GCAATG 2 cut(s) 240, 462
BseBI CCWGG 4 cut(s) 27, 528, 646, 775
BseDI CCNNGG 5 cut(s) 26, 390, 527, 774, 889
BseGI GGATG 2 cut(s) 443, 643
BseLI CCNNNNNNNGG 2 cut(s) 404, 543
BseMI GCAATG 2 cut(s) 240, 462
BseNI ACTGG 2 cut(s) 354, 470
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 4 cut(s) 217, 267, 346, 544
BseYI CCCAGC 1 cut(s) 153
BsgI GTGCAG 1 cut(s) 861
BshFI GGCC 2 cut(s) 467, 620
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 2 cut(s) 622, 921
BslFI GGGAC 3 cut(s) 381, 655, 937
BslI CCNNNNNNNGG 2 cut(s) 404, 543
BsmAI GTCTC 1 cut(s) 9
BsmFI GGGAC 3 cut(s) 381, 655, 937
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 2 cut(s) 467, 620
BsoBI CYCGRG 1 cut(s) 670
Bsp143I GATC 2 cut(s) 407, 733
BspACI CCGC 3 cut(s) 14, 461, 464
BspANI GGCC 2 cut(s) 467, 620
BspLI GGNNCC 5 cut(s) 396, 397, 468, 643, 925
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 1 cut(s) 415
BspQI GCTCTTC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 240, 462
BsrI ACTGG 2 cut(s) 354, 470
BssECI CCNNGG 5 cut(s) 26, 390, 527, 774, 889
BssMI GATC 2 cut(s) 407, 733
BssT1I CCWWGG 2 cut(s) 390, 889
Bst2UI CCWGG 4 cut(s) 27, 528, 646, 775
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 3 cut(s) 164, 454, 579
BstDEI CTNAG 1 cut(s) 928
BstF5I GGATG 2 cut(s) 443, 643
BstKTI GATC 2 cut(s) 410, 736
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 407, 733
BstMWI GCNNNNNNNGC 4 cut(s) 20, 338, 461, 917
BstNI CCWGG 4 cut(s) 27, 528, 646, 775
BstNSI RCATGY 1 cut(s) 952
BstSCI CCNGG 6 cut(s) 25, 526, 620, 644, 773, 920
BstSFI CTRYAG 3 cut(s) 312, 499, 558
BstV1I GCAGC 4 cut(s) 217, 267, 346, 544
BsuI GTATCC 1 cut(s) 199
BsuRI GGCC 2 cut(s) 467, 620
BtsCI GGATG 2 cut(s) 443, 643
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 4 cut(s) 143, 347, 586, 849
Cfr13I GGNCC 6 cut(s) 395, 466, 534, 619, 642, 924
CviAII CATG 1 cut(s) 949
DdeI CTNAG 1 cut(s) 928
DpnI GATC 2 cut(s) 409, 735
DpnII GATC 2 cut(s) 407, 733
DrdI GACNNNNNNGTC 1 cut(s) 649
DseDI GACNNNNNNGTC 1 cut(s) 649
Eam1104I CTCTTC 3 cut(s) 164, 454, 579
EarI CTCTTC 3 cut(s) 164, 454, 579
Eco130I CCWWGG 2 cut(s) 390, 889
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 4 cut(s) 395, 534, 642, 924
Eco57I CTGAAG 3 cut(s) 145, 407, 435
Eco88I CYCGRG 1 cut(s) 670
EcoO109I RGGNCCY 3 cut(s) 395, 642, 924
EcoRII CCWGG 4 cut(s) 25, 526, 644, 773
EcoRV GATATC 1 cut(s) 378
EcoT14I CCWWGG 2 cut(s) 390, 889
EcoT22I ATGCAT 1 cut(s) 728
ErhI CCWWGG 2 cut(s) 390, 889
FaeI CATG 1 cut(s) 952
FaqI GGGAC 3 cut(s) 381, 655, 937
FatI CATG 1 cut(s) 948
Fnu4HI GCNGC 6 cut(s) 231, 281, 360, 462, 465, 558
FokI GGATG 2 cut(s) 430, 650
Fsp4HI GCNGC 6 cut(s) 231, 281, 360, 462, 465, 558
FspBI CTAG 2 cut(s) 146, 917
GluI GCNGC 6 cut(s) 231, 281, 360, 462, 465, 558
GsaI CCCAGC 1 cut(s) 157
HaeIII GGCC 2 cut(s) 467, 620
HapII CCGG 2 cut(s) 622, 921
Hin1II CATG 1 cut(s) 952
HindIII AAGCTT 4 cut(s) 187, 489, 758, 822
HinfI GANTC 1 cut(s) 662
HpaII CCGG 2 cut(s) 622, 921
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 3 cut(s) 164, 252, 784
Hpy188III TCNNGA 5 cut(s) 178, 515, 670, 672, 941
Hpy8I GTNNAC 1 cut(s) 534
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 4 cut(s) 20, 338, 461, 917
HpyF3I CTNAG 1 cut(s) 928
HpySE526I ACGT 1 cut(s) 173
Hsp92II CATG 1 cut(s) 952
KflI GGGWCCC 1 cut(s) 395
Kzo9I GATC 2 cut(s) 407, 733
LguI GCTCTTC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 4 cut(s) 217, 267, 346, 544
MaeI CTAG 2 cut(s) 146, 917
MaeII ACGT 1 cut(s) 173
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 409, 735
MboI GATC 2 cut(s) 407, 733
MboII GAAGA 5 cut(s) 57, 151, 441, 503, 596
MfeI CAATTG 1 cut(s) 342
MluCI AATT 1 cut(s) 342
MmeI TCCRAC 1 cut(s) 929
MnlI CCTC 7 cut(s) 193, 196, 220, 457, 580, 618, 872
Mph1103I ATGCAT 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 3 cut(s) 294, 729, 827
MslI CAYNNNNRTG 1 cut(s) 529
MspI CCGG 2 cut(s) 622, 921
MspR9I CCNGG 6 cut(s) 27, 528, 622, 646, 775, 922
MunI CAATTG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 88
MvaI CCWGG 4 cut(s) 27, 528, 646, 775
MwoI GCNNNNNNNGC 4 cut(s) 20, 338, 461, 917
NciI CCSGG 2 cut(s) 622, 922
NdeII GATC 2 cut(s) 407, 733
NlaIII CATG 1 cut(s) 952
NlaIV GGNNCC 5 cut(s) 396, 397, 468, 643, 925
NsiI ATGCAT 1 cut(s) 728
NspI RCATGY 1 cut(s) 952
OliI CACNNNNGTG 1 cut(s) 529
PaeR7I CTCGAG 1 cut(s) 670
PciSI GCTCTTC 1 cut(s) 164
PctI GAATGC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 1 cut(s) 662
PkrI GCNGC 6 cut(s) 232, 282, 361, 463, 466, 559
PpuMI RGGWCCY 3 cut(s) 395, 642, 924
PshBI ATTAAT 1 cut(s) 729
Psp1406I AACGTT 1 cut(s) 173
Psp5II RGGWCCY 3 cut(s) 395, 642, 924
Psp6I CCWGG 4 cut(s) 25, 526, 644, 773
PspFI CCCAGC 1 cut(s) 153
PspGI CCWGG 4 cut(s) 25, 526, 644, 773
PspN4I GGNNCC 5 cut(s) 396, 397, 468, 643, 925
PspPI GGNCC 6 cut(s) 395, 466, 534, 619, 642, 924
PspPPI RGGWCCY 3 cut(s) 395, 642, 924
PstI CTGCAG 1 cut(s) 562
RseI CAYNNNNRTG 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 164
SaqAI TTAA 3 cut(s) 294, 729, 827
SatI GCNGC 6 cut(s) 231, 281, 360, 462, 465, 558
Sau3AI GATC 2 cut(s) 407, 733
Sau96I GGNCC 6 cut(s) 395, 466, 534, 619, 642, 924
ScrFI CCNGG 6 cut(s) 27, 528, 622, 646, 775, 922
SfcI CTRYAG 3 cut(s) 312, 499, 558
Sfr274I CTCGAG 1 cut(s) 670
SinI GGWCC 4 cut(s) 395, 534, 642, 924
SlaI CTCGAG 1 cut(s) 670
SmiMI CAYNNNNRTG 1 cut(s) 529
SmlI CTYRAG 1 cut(s) 670
SmoI CTYRAG 1 cut(s) 670
Sse9I AATT 1 cut(s) 342
SsiI CCGC 3 cut(s) 14, 461, 464
SspMI CTAG 2 cut(s) 146, 917
StyD4I CCNGG 6 cut(s) 25, 526, 620, 644, 773, 920
StyI CCWWGG 2 cut(s) 390, 889
TaaI ACNGT 1 cut(s) 138
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 413, 671
TasI AATT 1 cut(s) 342
TauI GCSGC 2 cut(s) 464, 467
TfiI GAWTC 1 cut(s) 662
Tru1I TTAA 3 cut(s) 294, 729, 827
Tru9I TTAA 3 cut(s) 294, 729, 827
TscAI CASTG 4 cut(s) 143, 354, 586, 849
TseI GCWGC 4 cut(s) 230, 280, 359, 557
TspDTI ATGAA 3 cut(s) 231, 312, 565
TspRI CASTG 4 cut(s) 143, 354, 586, 849
VpaK11BI GGWCC 4 cut(s) 395, 534, 642, 924
VspI ATTAAT 1 cut(s) 729
XceI RCATGY 1 cut(s) 952
XhoI CTCGAG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 190
XspI CTAG 2 cut(s) 146, 917
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.