Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004444

Physical Location & Seq

Genomic Coordinates Forward (+)

19075306 .. 19079016

Gene Structure 3711 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G202300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGTCTCCAATGTCAGTTTTAGCACAAGGGTATTCGCTACGCCCACCCATTTGGACACCCAACTTGTCAAATCGACAACTTGGTAGGCTTTCAAGCTGTGTCAGTGGCGGAGGCAAATTGTTGACGAATAGGAACAAATATGTGTTAGTTTCCCACCTCTCCAGACCCCAAACGTTCAGGATTAGAAGCTTTTCACAGGAAGATGCAGAAAATAATGAGGTTGCAATGTCTAACGACAATCTGGATGGGCAAAATGTGACTGCTGATGAGCTGCTTGGAAATGTTAAAAATATTCAAATTAGTACAGACACAGAGAGTTCATTTCTCGCTAAAATAGCAATTGCACTAGGCATAGCAGCAACAATCACTCTAATATCTGTAGGCATCAAGGGTCCCCCCACTATTGGGTCATCAAATGGATTTCAGTTCCTCCCAGAAAGTGCAACCTCTTCAGTAATGGCTGCAGCCCCGGTCGGTTTCACTGTCAAAGCTTTTGGGTATAGCATTGTTCTTCCAGCATATGCACCAGGGTGGATCTACTTTTGGTTGCTTATGGCTGCAGGCTGTGGACTTTTCATTAGTGAAGAGGCTCTAAATATTTGGGTTGGCATATCTTTGGCTCGAATGGTGTCTTTGGATGGAACATGGCAGTCGTTTGCTGAATCTTTCTCAAGAAATGCTCCATACATTATATCCACAGCTCTTTGGGTGTATTGGGGAGTATGCATTAGTGATCTGATACCATTTTATCTTGGGAAGCTATTTAGGAAATCCAGGGCCTCTGATGATATTTTGTCAAAGTTAGGGATTGGAAAAGAGAAAGCTTTAAGCATTACCTCTGAAGTGCAAAGATATGGCAACCTCATTGGGTTTGTTGAACGATTTTCCCTTGGAGTCAGAAATCCAACAGCTTTTGTAGCAGGGGCCTTGGGTATCTCTTCAGAGTGTTTCTTTGCTGGTGTTTGTTTTGGTGGTTTGATCACCCTTCCCATCCAGTTGTTGATAGGATTCTTCTTGAGGGAGCGCCCTGTCTTTGCCCTTGCTACTGTTGCATCAGCAGTGGGCATTTGGACCGTCTTCCCTTATCTTGTGGCTGCATCAACAGCATTGTTCCTTTACCTGAGACGCCGTTACTCTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

381

Amino Acids

41.17

Weight (kDa)

9.17

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13150 AT4G13150 AT4G13150 AT4G13150 AT4G13150
fragaria_vesca	FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010
malus_domestica	MD05G1174800.v1.1
prunus_persica	Prupe.8G202300_v2.0.a1 Prupe.8G202300_v2.0.a1 Prupe.8G202300_v2.0.a1
pyrus_communis	pycom05g16170
rosa_chinensis	RchiOBHm_Chr6g0284801 RchiOBHm_Chr6g0284811
rosa_laevigata	RLG00000012714 RLG00000012716 RLG00000012717
rosa_multiflora	Rmu_sc0000686.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184350
rosa_rugosa	Rorug06G0167100 Rorug06G0167100
rosa_samantha	Rh6AG279600 Rh6BG279800 Rh6CG282000 Rh6DG274900
rosa_wichuraiana	Rw6G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	108
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	1 cut(s)	542
AcuI	CTGAAG	3 cut(s)	435, 861, 924
AcyI	GRCGYC	1 cut(s)	1126
AfaI	GTAC	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	404, 405
AgsI	TTSAA	3 cut(s)	93, 296, 878
AjnI	CCWGG	2 cut(s)	526, 773
AleI	CACNNNNGTG	1 cut(s)	529
AluBI	AGCT	8 cut(s)	96, 189, 271, 491, 701, 760, 824, 911
AluI	AGCT	8 cut(s)	96, 189, 271, 491, 701, 760, 824, 911
Alw26I	GTCTC	2 cut(s)	9, 1117
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	2 cut(s)	777, 924
ApeKI	GCWGC	6 cut(s)	271, 356, 461, 464, 557, 1094
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	1026
AspS9I	GGNCC	4 cut(s)	392, 777, 924, 1071
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	973
AvaII	GGWCC	2 cut(s)	392, 1071
BbsI	GAAGAC	1 cut(s)	1069
BbvI	GCAGC	6 cut(s)	258, 368, 448, 476, 544, 1081
BccI	CCATC	3 cut(s)	239, 632, 998
BceAI	ACGGC	1 cut(s)	1113
BciT130I	CCWGG	2 cut(s)	528, 775
BclI	TGATCA	1 cut(s)	978
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	2 cut(s)	9, 1117
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	3 cut(s)	378, 462, 558
BfoI	RGCGCY	1 cut(s)	1027
BisI	GCNGC	6 cut(s)	272, 357, 462, 465, 558, 1095
BlsI	GCNGC	6 cut(s)	273, 358, 463, 466, 559, 1096
Bme1390I	CCNGG	3 cut(s)	470, 528, 775
Bme18I	GGWCC	2 cut(s)	392, 1071
BmgT120I	GGNCC	4 cut(s)	392, 777, 924, 1071
BmiI	GGNNCC	3 cut(s)	393, 394, 925
BmrFI	CCNGG	3 cut(s)	470, 528, 775
BmsI	GCATC	4 cut(s)	193, 393, 1061, 1106
BpiI	GAAGAC	1 cut(s)	1069
BpmI	CTGGAG	1 cut(s)	145
BpuEI	CTTGAG	2 cut(s)	655, 1036
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	1126
BsaJI	CCNNGG	5 cut(s)	468, 527, 774, 889, 927
Bsc4I	CCNNNNNNNGG	2 cut(s)	404, 405
Bse1I	ACTGG	1 cut(s)	994
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	2 cut(s)	528, 775
BseDI	CCNNGG	5 cut(s)	468, 527, 774, 889, 927
BseGI	GGATG	3 cut(s)	250, 643, 990
BseLI	CCNNNNNNNGG	2 cut(s)	404, 405
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	1112
BseNI	ACTGG	1 cut(s)	994
BseXI	GCAGC	6 cut(s)	258, 368, 448, 476, 544, 1081
Bsh1285I	CGRYCG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	779, 926
BsiEI	CGRYCG	1 cut(s)	474
BsiSI	CCGG	1 cut(s)	470
BslFI	GGGAC	1 cut(s)	378
BslI	CCNNNNNNNGG	2 cut(s)	404, 405
BsmAI	GTCTC	2 cut(s)	9, 1117
BsmBI	CGTCTC	1 cut(s)	1117
BsmFI	GGGAC	1 cut(s)	378
BsnI	GGCC	2 cut(s)	779, 926
Bsp143I	GATC	3 cut(s)	534, 733, 978
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	779, 926
BspCNI	CTCAG	1 cut(s)	1113
BspLI	GGNNCC	3 cut(s)	393, 394, 925
BspMAI	CTGCAG	2 cut(s)	466, 562
BspPI	GGATC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	1 cut(s)	994
BssECI	CCNNGG	5 cut(s)	468, 527, 774, 889, 927
BssMI	GATC	3 cut(s)	534, 733, 978
BssNI	GRCGYC	1 cut(s)	1126
BssT1I	CCWWGG	2 cut(s)	889, 927
Bst2UI	CCWGG	2 cut(s)	528, 775
Bst4CI	ACNGT	3 cut(s)	484, 1048, 1075
Bst6I	CTCTTC	3 cut(s)	454, 579, 943
BstACI	GRCGYC	1 cut(s)	1126
BstC8I	GCNNGC	1 cut(s)	562
BstDEI	CTNAG	1 cut(s)	1121
BstF5I	GGATG	3 cut(s)	250, 643, 990
BstH2I	RGCGCY	1 cut(s)	1027
BstHHI	GCGC	1 cut(s)	1026
BstKTI	GATC	3 cut(s)	537, 736, 981
BstMAI	GTCTC	2 cut(s)	9, 1117
BstMBI	GATC	3 cut(s)	534, 733, 978
BstMCI	CGRYCG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	4 cut(s)	335, 917, 1049, 1103
BstNI	CCWGG	2 cut(s)	528, 775
BstSCI	CCNGG	3 cut(s)	468, 526, 773
BstSFI	CTRYAG	3 cut(s)	378, 462, 558
BstV1I	GCAGC	6 cut(s)	258, 368, 448, 476, 544, 1081
BstV2I	GAAGAC	1 cut(s)	1069
BstX2I	RGATCY	1 cut(s)	534
BstXI	CCANNNNNNTGG	1 cut(s)	51
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	2 cut(s)	779, 926
BtsCI	GGATG	3 cut(s)	250, 643, 990
BtsI	GCAGTG	1 cut(s)	1065
BtsIMutI	CAGTG	3 cut(s)	109, 480, 1065
Cac8I	GCNNGC	1 cut(s)	562
CfoI	GCGC	1 cut(s)	1026
Cfr13I	GGNCC	4 cut(s)	392, 777, 924, 1071
CseI	GACGC	1 cut(s)	1134
Csp6I	GTAC	1 cut(s)	303
CviAII	CATG	1 cut(s)	645
CviQI	GTAC	1 cut(s)	303
DdeI	CTNAG	1 cut(s)	1121
DpnI	GATC	3 cut(s)	536, 735, 980
DpnII	GATC	3 cut(s)	534, 733, 978
Eam1104I	CTCTTC	3 cut(s)	454, 579, 943
EarI	CTCTTC	3 cut(s)	454, 579, 943
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	889, 927
Eco47I	GGWCC	2 cut(s)	392, 1071
Eco57I	CTGAAG	3 cut(s)	435, 861, 924
EcoO109I	RGGNCCY	3 cut(s)	392, 777, 924
EcoRII	CCWGG	2 cut(s)	526, 773
EcoT14I	CCWWGG	2 cut(s)	889, 927
EcoT22I	ATGCAT	1 cut(s)	728
ErhI	CCWWGG	2 cut(s)	889, 927
Esp3I	CGTCTC	1 cut(s)	1117
FaeI	CATG	1 cut(s)	648
FaqI	GGGAC	1 cut(s)	378
FatI	CATG	1 cut(s)	644
FauNDI	CATATG	1 cut(s)	520
FbaI	TGATCA	1 cut(s)	978
Fnu4HI	GCNGC	6 cut(s)	272, 357, 462, 465, 558, 1095
FokI	GGATG	3 cut(s)	257, 650, 977
Fsp4HI	GCNGC	6 cut(s)	272, 357, 462, 465, 558, 1095
FspBI	CTAG	1 cut(s)	347
GlaI	GCGC	1 cut(s)	1025
GluI	GCNGC	6 cut(s)	272, 357, 462, 465, 558, 1095
GsuI	CTGGAG	1 cut(s)	145
HaeII	RGCGCY	1 cut(s)	1027
HaeIII	GGCC	2 cut(s)	779, 926
HapII	CCGG	1 cut(s)	470
HgaI	GACGC	1 cut(s)	1134
HhaI	GCGC	1 cut(s)	1026
Hin1I	GRCGYC	1 cut(s)	1126
Hin1II	CATG	1 cut(s)	648
Hin6I	GCGC	1 cut(s)	1024
HinP1I	GCGC	1 cut(s)	1024
HincII	GTYRAC	1 cut(s)	123
HindII	GTYRAC	1 cut(s)	123
HindIII	AAGCTT	3 cut(s)	187, 489, 822
HinfI	GANTC	3 cut(s)	662, 894, 1008
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	1 cut(s)	973
Hpy166II	GTNNAC	2 cut(s)	123, 569
Hpy188I	TCNGA	5 cut(s)	738, 784, 841, 899, 943
Hpy188III	TCNNGA	5 cut(s)	162, 178, 242, 672, 1015
Hpy8I	GTNNAC	2 cut(s)	123, 569
HpyAV	CCTTC	1 cut(s)	995
HpyCH4III	ACNGT	3 cut(s)	484, 1048, 1075
HpyCH4IV	ACGT	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	4 cut(s)	335, 917, 1049, 1103
HpyF3I	CTNAG	1 cut(s)	1121
HpySE526I	ACGT	1 cut(s)	173
Hsp92I	GRCGYC	1 cut(s)	1126
Hsp92II	CATG	1 cut(s)	648
HspAI	GCGC	1 cut(s)	1024
KflI	GGGWCCC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	978
Kzo9I	GATC	3 cut(s)	534, 733, 978
LmnI	GCTCC	2 cut(s)	685, 1021
Lsp1109I	GCAGC	6 cut(s)	258, 368, 448, 476, 544, 1081
LweI	GCATC	4 cut(s)	193, 393, 1061, 1106
MaeI	CTAG	1 cut(s)	347
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	2 cut(s)	256, 1130
MalI	GATC	3 cut(s)	536, 735, 980
MboI	GATC	3 cut(s)	534, 733, 978
MboII	GAAGA	7 cut(s)	212, 441, 503, 596, 930, 1003, 1069
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	1 cut(s)	534
MluCI	AATT	3 cut(s)	116, 297, 339
MlyI	GAGTC	1 cut(s)	903
MmeI	TCCRAC	1 cut(s)	929
Mph1103I	ATGCAT	1 cut(s)	728
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	285, 827
MslI	CAYNNNNRTG	1 cut(s)	529
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	470, 528, 775
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	528, 775
MwoI	GCNNNNNNNGC	4 cut(s)	335, 917, 1049, 1103
NciI	CCSGG	1 cut(s)	470
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	3 cut(s)	534, 733, 978
NlaIII	CATG	1 cut(s)	648
NlaIV	GGNNCC	3 cut(s)	393, 394, 925
NmuCI	GTSAC	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	728
OliI	CACNNNNGTG	1 cut(s)	529
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	662, 1008
PkrI	GCNGC	6 cut(s)	273, 358, 463, 466, 559, 1096
PleI	GAGTC	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	902
PpuMI	RGGWCCY	1 cut(s)	392
Psp1406I	AACGTT	1 cut(s)	173
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	526, 773
PspGI	CCWGG	2 cut(s)	526, 773
PspN4I	GGNNCC	3 cut(s)	393, 394, 925
PspPI	GGNCC	4 cut(s)	392, 777, 924, 1071
PspPPI	RGGWCCY	1 cut(s)	392
PstI	CTGCAG	2 cut(s)	466, 562
PsuI	RGATCY	1 cut(s)	534
RsaI	GTAC	1 cut(s)	304
RsaNI	GTAC	1 cut(s)	303
RseI	CAYNNNNRTG	1 cut(s)	529
SaqAI	TTAA	2 cut(s)	285, 827
SatI	GCNGC	6 cut(s)	272, 357, 462, 465, 558, 1095
Sau3AI	GATC	3 cut(s)	534, 733, 978
Sau96I	GGNCC	4 cut(s)	392, 777, 924, 1071
SchI	GAGTC	1 cut(s)	903
ScrFI	CCNGG	3 cut(s)	470, 528, 775
SfaNI	GCATC	4 cut(s)	193, 393, 1061, 1106
SfcI	CTRYAG	3 cut(s)	378, 462, 558
SinI	GGWCC	2 cut(s)	392, 1071
SmiMI	CAYNNNNRTG	1 cut(s)	529
SmlI	CTYRAG	2 cut(s)	670, 1015
SmoI	CTYRAG	2 cut(s)	670, 1015
Sse9I	AATT	3 cut(s)	116, 297, 339
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	2 cut(s)	292, 598
SspMI	CTAG	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	468, 526, 773
StyI	CCWWGG	2 cut(s)	889, 927
TaaI	ACNGT	3 cut(s)	484, 1048, 1075
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	2 cut(s)	73, 622
TasI	AATT	3 cut(s)	116, 297, 339
TatI	WGTACW	1 cut(s)	302
TfiI	GAWTC	2 cut(s)	662, 1008
Tru1I	TTAA	2 cut(s)	285, 827
Tru9I	TTAA	2 cut(s)	285, 827
TscAI	CASTG	3 cut(s)	109, 487, 1065
TseFI	GTSAC	1 cut(s)	256
TseI	GCWGC	6 cut(s)	271, 356, 461, 464, 557, 1094
Tsp45I	GTSAC	1 cut(s)	256
TspDTI	ATGAA	2 cut(s)	309, 565
TspGWI	ACGGA	1 cut(s)	1128
TspRI	CASTG	3 cut(s)	109, 487, 1065
VpaK11BI	GGWCC	2 cut(s)	392, 1071
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.