RLG00000012716

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
21590721 .. 21593615
2895 bp
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UTR
Exon/CDS
Intron
RLM00000012716

Sequence Viewer

Length: 462 bp
ATGGTGACTGCAAACAGCAGAAGTGATTCTCTTGAGGAGAAATGTTTGGAGCTCATGAAGAGATTCTGGAAAGAATTAGGGATTGAGTTCAACGTGTTTCCTTACATTTGTGGGGGGATTGGCAAAGAGAAAGCTGTAAGCATAATCAGTGCAGTGCAAAGATATGGCAACCTCATTGGTTTTGTTGAACGCTTTTCCCTAGGAATGAGAAATCCAACAGCTTTTCTAGCAGGGACGTTAGGTATATCTCCAGAGTGTTTCTTTTCTGGAGTTTGTTTGGGTGGCTTGATCACCCTTCCGATTCAGTTCGAGATAGAATTCTTCTTGAGGGAGCGCCCTGTCTTTGCCCTAGCTACTGCTACAACAGTTGTGGGCATTTGGACTATTTTCCCTTATGCAGTGGCTGCATTGACAGCATTGTTCCTTTACCTTCGACAACGTTACTCAACGTTGTCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

154

Amino Acids

17.07

Weight (kDa)

7.62

Isoelectric Point (pI)

42.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 2 cut(s) 439, 449
AcsI RAATTY 1 cut(s) 317
AflIII ACRYGT 1 cut(s) 93
AgsI TTSAA 2 cut(s) 91, 188
AluBI AGCT 4 cut(s) 52, 134, 221, 353
AluI AGCT 4 cut(s) 52, 134, 221, 353
Alw21I GWGCWC 1 cut(s) 54
AlwNI CAGNNNCTG 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 317
Asp700I GAANNNNTTC 2 cut(s) 25, 62
AspA2I CCTAGG 1 cut(s) 199
AspLEI GCGC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 16, 283
AvrII CCTAGG 1 cut(s) 199
BanII GRGCYC 1 cut(s) 54
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 391
BclI TGATCA 1 cut(s) 288
BfaI CTAG 3 cut(s) 200, 227, 350
BfoI RGCGCY 1 cut(s) 337
BisI GCNGC 1 cut(s) 405
BlnI CCTAGG 1 cut(s) 199
BlsI GCNGC 1 cut(s) 406
BpmI CTGGAG 2 cut(s) 234, 288
BpuEI CTTGAG 2 cut(s) 53, 346
BsaJI CCNNGG 1 cut(s) 199
BseDI CCNNGG 1 cut(s) 199
BseRI GAGGAG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 391
BsgI GTGCAG 1 cut(s) 171
BsiHKAI GWGCWC 1 cut(s) 54
BslFI GGGAC 1 cut(s) 247
BsmFI GGGAC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 288
BspHI TCATGA 1 cut(s) 54
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 1 cut(s) 288
BssT1I CCWWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 1 cut(s) 53
BstAPI GCANNNNNTGC 1 cut(s) 404
BstH2I RGCGCY 1 cut(s) 337
BstHHI GCGC 1 cut(s) 336
BstKTI GATC 1 cut(s) 291
BstMBI GATC 1 cut(s) 288
BstMWI GCNNNNNNNGC 3 cut(s) 227, 404, 413
BstV1I GCAGC 1 cut(s) 391
BtsI GCAGTG 2 cut(s) 159, 405
BtsIMutI CAGTG 3 cut(s) 154, 159, 405
CaiI CAGNNNCTG 1 cut(s) 404
CciI TCATGA 1 cut(s) 54
CfoI GCGC 1 cut(s) 336
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 1 cut(s) 55
CviJI RGCY 6 cut(s) 52, 134, 221, 285, 353, 404
CviKI_1 RGCY 6 cut(s) 52, 134, 221, 285, 353, 404
DpnI GATC 1 cut(s) 290
DpnII GATC 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 199
Eco24I GRGCYC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoRI GAATTC 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 1 cut(s) 58
FaiI YATR 5 cut(s) 56, 143, 165, 245, 396
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 54
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 405
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 3 cut(s) 200, 227, 350
GlaI GCGC 1 cut(s) 335
GluI GCNGC 1 cut(s) 405
GsuI CTGGAG 2 cut(s) 234, 288
HaeII RGCGCY 1 cut(s) 337
HhaI GCGC 1 cut(s) 336
Hin1II CATG 1 cut(s) 58
Hin6I GCGC 1 cut(s) 334
HinP1I GCGC 1 cut(s) 334
HinfI GANTC 3 cut(s) 26, 63, 301
HphI GGTGA 2 cut(s) 16, 283
Hpy188I TCNGA 2 cut(s) 300, 457
Hpy188III TCNNGA 7 cut(s) 32, 55, 67, 251, 267, 310, 325
HpyAV CCTTC 2 cut(s) 305, 440
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 4 cut(s) 93, 236, 439, 449
HpyCH4V TGCA 5 cut(s) 11, 152, 157, 398, 407
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 404, 413
HpySE526I ACGT 4 cut(s) 93, 236, 439, 449
Hsp92II CATG 1 cut(s) 58
HspAI GCGC 1 cut(s) 334
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 1 cut(s) 288
LmnI GCTCC 2 cut(s) 49, 331
LpnPI CCDG 5 cut(s) 52, 216, 252, 264, 351
Lsp1109I GCAGC 1 cut(s) 391
MaeI CTAG 3 cut(s) 200, 227, 350
MaeII ACGT 4 cut(s) 93, 236, 439, 449
MaeIII GTNAC 2 cut(s) 4, 440
MalI GATC 1 cut(s) 290
MboI GATC 1 cut(s) 288
MboII GAAGA 2 cut(s) 70, 313
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 74, 317
MmeI TCCRAC 1 cut(s) 239
MnlI CCTC 3 cut(s) 28, 182, 321
MroXI GAANNNNTTC 2 cut(s) 25, 62
MwoI GCNNNNNNNGC 3 cut(s) 227, 404, 413
NdeII GATC 1 cut(s) 288
NlaIII CATG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 4
PagI TCATGA 1 cut(s) 54
PdmI GAANNNNTTC 2 cut(s) 25, 62
PfeI GAWTC 3 cut(s) 26, 63, 301
PkrI GCNGC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 54
Psp1406I AACGTT 2 cut(s) 439, 449
PstNI CAGNNNCTG 1 cut(s) 404
SacI GAGCTC 1 cut(s) 54
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 1 cut(s) 288
SduI GDGCHC 1 cut(s) 54
SmlI CTYRAG 2 cut(s) 32, 325
SmoI CTYRAG 2 cut(s) 32, 325
Sse9I AATT 2 cut(s) 74, 317
SspMI CTAG 3 cut(s) 200, 227, 350
SstI GAGCTC 1 cut(s) 54
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 4 cut(s) 96, 239, 442, 452
TaqI TCGA 2 cut(s) 309, 433
TasI AATT 2 cut(s) 74, 317
TfiI GAWTC 3 cut(s) 26, 63, 301
TscAI CASTG 3 cut(s) 154, 159, 405
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 71
TspRI CASTG 3 cut(s) 154, 159, 405
XapI RAATTY 1 cut(s) 317
XmaJI CCTAGG 1 cut(s) 199
XmnI GAANNNNTTC 2 cut(s) 25, 62
XspI CTAG 3 cut(s) 200, 227, 350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.