Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000686.1

Orthogroup ID

OG0004444

Physical Location & Seq

Genomic Coordinates Forward (+)

39921 .. 44838

Gene Structure 4918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000686.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgtctctaatagcggattttgcacctgggtcttgtctattcccacacaccccaaaacccaaatcttcaaaccgacaacttattaggcattcaagctgtttcaatgtcaaacacagattgctagtgaatgggaaacaatgtgggctggtttcccagctcttcagaccccaaaccttcaggattagaagcttttcgaaggaggatacagaaaatgaaaatgatgaggctgcaatgtctaatgacattttgaatgggcaagatgggatttatgatgagttgcttggaaatgttaaagttactcagactactacagaaagtttatttctggcaaaaatagcaattgcactgggaatagctgcaacagttacattgatatctattagcatcaagggtcccactcttggatcatcgaatgggcttcagttcttgccagaaagctcatcctcttcagcaatggcggcggcccctgttggtttcactttcaaagcttttggctacagcattgttcttccagaatatgcaccagggtgggtctacttttggttgcttatggctgcagggtttgggcttttcatcagtgaagaggctctaaatatatgggttggcatatccttagcccggaggctatctttggatgggacctggaagtcatttgctgaatctttctcgagaaatgctccgtacattgtatctacaactctttgggtgtattggggagtatgcattagtgatctaatacctttttatatggggaagctttttagacaatccagggtgtctgatgatattttttcaaagttagggattggcaaagagaaagctttaagcataacccgtgcagtgcaaagatatggcaaccttattggttttgttgaacgcttttcccttggagtgagaaatccaacagcttttctagcagggaccttaggtatatctccagagtgtttctttgctggagtttgtttgggtggcttgatcacccttccgatccagttcgggataggattcttcttgagggagcgccctgtctttgccctagctactgttgcaacagttgtgggcatttggactattttcccttatgcagtggctacatcaacagcattgttcctttaccttcgacaacgttactcaacgacgtcagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SNARE_assoc

Protein Analysis

382

Amino Acids

41.88

Weight (kDa)

9.08

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004444)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13150 AT4G13150 AT4G13150 AT4G13150 AT4G13150
fragaria_vesca	FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010 FvH4_2g19010
malus_domestica	MD05G1174800.v1.1
prunus_persica	Prupe.8G202300_v2.0.a1 Prupe.8G202300_v2.0.a1 Prupe.8G202300_v2.0.a1
pyrus_communis	pycom05g16170
rosa_chinensis	RchiOBHm_Chr6g0284801 RchiOBHm_Chr6g0284811
rosa_laevigata	RLG00000012714 RLG00000012716 RLG00000012717
rosa_multiflora	Rmu_sc0000686.1_g000011
rosa_roxburghii	Rroxscaffold_7G00184350
rosa_rugosa	Rorug06G0167100 Rorug06G0167100
rosa_samantha	Rh6AG279600 Rh6BG279800 Rh6CG282000 Rh6DG274900
rosa_wichuraiana	Rw6G024050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	646
AatII	GACGTC	1 cut(s)	1142
AccI	GTMKAC	1 cut(s)	534
AciI	CCGC	3 cut(s)	14, 458, 461
AclI	AACGTT	1 cut(s)	1126
AclWI	GGATC	2 cut(s)	412, 982
AcuI	CTGAAG	4 cut(s)	145, 160, 404, 432
AcyI	GRCGYC	1 cut(s)	1139
AfaI	GTAC	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	401, 618
AgsI	TTSAA	7 cut(s)	69, 93, 103, 250, 484, 795, 875
AjnI	CCWGG	4 cut(s)	25, 523, 641, 770
AleI	CACNNNNGTG	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	412, 982
Ama87I	CYCGRG	1 cut(s)	667
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	3 cut(s)	227, 356, 554
Asp700I	GAANNNNTTC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	1023
AspS9I	GGNCC	4 cut(s)	392, 463, 639, 921
AsuC2I	CCSGG	1 cut(s)	619
AsuHPI	GGTGA	1 cut(s)	970
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	1 cut(s)	667
AvaII	GGWCC	3 cut(s)	392, 639, 921
AxyI	CCTNAGG	1 cut(s)	925
BbvI	GCAGC	3 cut(s)	214, 343, 541
BccI	CCATC	2 cut(s)	254, 629
BciT130I	CCWGG	4 cut(s)	27, 525, 643, 772
BciVI	GTATCC	1 cut(s)	196
BclI	TGATCA	1 cut(s)	975
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	122, 914, 1037
BfmI	CTRYAG	3 cut(s)	309, 496, 555
BfoI	RGCGCY	1 cut(s)	1024
BfuI	GTATCC	1 cut(s)	196
BisI	GCNGC	5 cut(s)	228, 357, 459, 462, 555
BlsI	GCNGC	5 cut(s)	229, 358, 460, 463, 556
Bme1390I	CCNGG	5 cut(s)	27, 525, 619, 643, 772
Bme18I	GGWCC	3 cut(s)	392, 639, 921
BmeT110I	CYCGRG	1 cut(s)	667
BmgT120I	GGNCC	4 cut(s)	392, 463, 639, 921
BmiI	GGNNCC	5 cut(s)	393, 394, 465, 640, 922
BmrFI	CCNGG	5 cut(s)	27, 525, 619, 643, 772
BmrI	ACTGGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	393
BmuI	ACTGGG	1 cut(s)	356
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BpmI	CTGGAG	2 cut(s)	921, 975
Bpu10I	CCTNAGC	1 cut(s)	613
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	1033
BpuMI	CCSGG	1 cut(s)	619
BsaHI	GRCGYC	1 cut(s)	1139
BsaJI	CCNNGG	4 cut(s)	26, 524, 771, 886
Bsc4I	CCNNNNNNNGG	2 cut(s)	401, 618
Bse1I	ACTGG	2 cut(s)	351, 991
Bse21I	CCTNAGG	1 cut(s)	925
Bse3DI	GCAATG	2 cut(s)	237, 459
BseBI	CCWGG	4 cut(s)	27, 525, 643, 772
BseDI	CCNNGG	4 cut(s)	26, 524, 771, 886
BseGI	GGATG	2 cut(s)	440, 640
BseLI	CCNNNNNNNGG	2 cut(s)	401, 618
BseMI	GCAATG	2 cut(s)	237, 459
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	351, 991
BseXI	GCAGC	3 cut(s)	214, 343, 541
BseYI	CCCAGC	1 cut(s)	153
BsgI	GTGCAG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	464
BsiHKCI	CYCGRG	1 cut(s)	667
BsiSI	CCGG	1 cut(s)	619
BslFI	GGGAC	3 cut(s)	378, 652, 934
BslI	CCNNNNNNNGG	2 cut(s)	401, 618
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	378, 652, 934
BsmI	GAATGC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	464
BsoBI	CYCGRG	1 cut(s)	667
Bsp119I	TTCGAA	1 cut(s)	194
Bsp143I	GATC	4 cut(s)	404, 730, 975, 987
BspACI	CCGC	3 cut(s)	14, 458, 461
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	1 cut(s)	313
BspLI	GGNNCC	5 cut(s)	393, 394, 465, 640, 922
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	2 cut(s)	412, 982
BspQI	GCTCTTC	1 cut(s)	164
BspT104I	TTCGAA	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	237, 459
BsrI	ACTGG	2 cut(s)	351, 991
BssECI	CCNNGG	4 cut(s)	26, 524, 771, 886
BssMI	GATC	4 cut(s)	404, 730, 975, 987
BssNI	GRCGYC	1 cut(s)	1139
BssT1I	CCWWGG	1 cut(s)	886
Bst2UI	CCWGG	4 cut(s)	27, 525, 643, 772
Bst4CI	ACNGT	3 cut(s)	364, 1045, 1054
Bst6I	CTCTTC	3 cut(s)	164, 451, 576
BstACI	GRCGYC	1 cut(s)	1139
BstBI	TTCGAA	1 cut(s)	194
BstDEI	CTNAG	3 cut(s)	300, 613, 925
BstF5I	GGATG	2 cut(s)	440, 640
BstH2I	RGCGCY	1 cut(s)	1024
BstHHI	GCGC	1 cut(s)	1023
BstKTI	GATC	4 cut(s)	407, 733, 978, 990
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	404, 730, 975, 987
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 335, 458, 914, 1046
BstNI	CCWGG	4 cut(s)	27, 525, 643, 772
BstSCI	CCNGG	5 cut(s)	25, 523, 617, 641, 770
BstSFI	CTRYAG	3 cut(s)	309, 496, 555
BstV1I	GCAGC	3 cut(s)	214, 343, 541
Bsu36I	CCTNAGG	1 cut(s)	925
BsuI	GTATCC	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	464
BtsCI	GGATG	2 cut(s)	440, 640
BtsI	GCAGTG	2 cut(s)	846, 1092
BtsIMutI	CAGTG	4 cut(s)	344, 583, 846, 1092
CfoI	GCGC	1 cut(s)	1023
Cfr13I	GGNCC	4 cut(s)	392, 463, 639, 921
Csp6I	GTAC	1 cut(s)	682
CspCI	CAANNNNNGTGG	2 cut(s)	1038, 1073
CviQI	GTAC	1 cut(s)	682
DdeI	CTNAG	3 cut(s)	300, 613, 925
DpnI	GATC	4 cut(s)	406, 732, 977, 989
DpnII	GATC	4 cut(s)	404, 730, 975, 987
DrdI	GACNNNNNNGTC	1 cut(s)	646
DseDI	GACNNNNNNGTC	1 cut(s)	646
Eam1104I	CTCTTC	3 cut(s)	164, 451, 576
EarI	CTCTTC	3 cut(s)	164, 451, 576
Eco130I	CCWWGG	1 cut(s)	886
Eco32I	GATATC	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	392, 639, 921
Eco57I	CTGAAG	4 cut(s)	145, 160, 404, 432
Eco81I	CCTNAGG	1 cut(s)	925
Eco88I	CYCGRG	1 cut(s)	667
EcoO109I	RGGNCCY	3 cut(s)	392, 639, 921
EcoRII	CCWGG	4 cut(s)	25, 523, 641, 770
EcoRV	GATATC	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	886
EcoT22I	ATGCAT	1 cut(s)	725
ErhI	CCWWGG	1 cut(s)	886
FaqI	GGGAC	3 cut(s)	378, 652, 934
FbaI	TGATCA	1 cut(s)	975
FblI	GTMKAC	1 cut(s)	534
Fnu4HI	GCNGC	5 cut(s)	228, 357, 459, 462, 555
FokI	GGATG	2 cut(s)	427, 647
Fsp4HI	GCNGC	5 cut(s)	228, 357, 459, 462, 555
FspBI	CTAG	3 cut(s)	122, 914, 1037
GlaI	GCGC	1 cut(s)	1022
GluI	GCNGC	5 cut(s)	228, 357, 459, 462, 555
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	2 cut(s)	921, 975
HaeII	RGCGCY	1 cut(s)	1024
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	1 cut(s)	619
HhaI	GCGC	1 cut(s)	1023
Hin1I	GRCGYC	1 cut(s)	1139
Hin6I	GCGC	1 cut(s)	1021
HinP1I	GCGC	1 cut(s)	1021
HindIII	AAGCTT	4 cut(s)	187, 486, 755, 819
HinfI	GANTC	2 cut(s)	659, 1005
HpaII	CCGG	1 cut(s)	619
HphI	GGTGA	1 cut(s)	970
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	5 cut(s)	164, 303, 781, 987, 1144
Hpy188III	TCNNGA	7 cut(s)	178, 512, 667, 669, 938, 997, 1012
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	1 cut(s)	1141
HpyAV	CCTTC	4 cut(s)	184, 190, 992, 1127
HpyCH4III	ACNGT	3 cut(s)	364, 1045, 1054
HpyCH4IV	ACGT	2 cut(s)	1126, 1139
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 335, 458, 914, 1046
HpyF3I	CTNAG	3 cut(s)	300, 613, 925
HpySE526I	ACGT	2 cut(s)	1126, 1139
Hsp92I	GRCGYC	1 cut(s)	1139
HspAI	GCGC	1 cut(s)	1021
KflI	GGGWCCC	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	975
Kzo9I	GATC	4 cut(s)	404, 730, 975, 987
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	2 cut(s)	682, 1018
Lsp1109I	GCAGC	3 cut(s)	214, 343, 541
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	3 cut(s)	122, 914, 1037
MaeII	ACGT	2 cut(s)	1126, 1139
MaeIII	GTNAC	3 cut(s)	295, 364, 1127
MalI	GATC	4 cut(s)	406, 732, 977, 989
MboI	GATC	4 cut(s)	404, 730, 975, 987
MboII	GAAGA	6 cut(s)	57, 151, 438, 500, 593, 1000
MfeI	CAATTG	1 cut(s)	339
MluCI	AATT	1 cut(s)	339
MmeI	TCCRAC	1 cut(s)	926
MnlI	CCTC	6 cut(s)	193, 217, 454, 577, 615, 1008
Mph1103I	ATGCAT	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	291, 824
MslI	CAYNNNNRTG	1 cut(s)	526
MspI	CCGG	1 cut(s)	619
MspR9I	CCNGG	5 cut(s)	27, 525, 619, 643, 772
MunI	CAATTG	1 cut(s)	339
Mva1269I	GAATGC	1 cut(s)	88
MvaI	CCWGG	4 cut(s)	27, 525, 643, 772
MwoI	GCNNNNNNNGC	5 cut(s)	20, 335, 458, 914, 1046
NciI	CCSGG	1 cut(s)	619
NdeII	GATC	4 cut(s)	404, 730, 975, 987
NlaIV	GGNNCC	5 cut(s)	393, 394, 465, 640, 922
NsiI	ATGCAT	1 cut(s)	725
NspV	TTCGAA	1 cut(s)	194
OliI	CACNNNNGTG	1 cut(s)	526
PaeR7I	CTCGAG	1 cut(s)	667
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	88
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	2 cut(s)	659, 1005
PkrI	GCNGC	5 cut(s)	229, 358, 460, 463, 556
PpuMI	RGGWCCY	3 cut(s)	392, 639, 921
Psp1406I	AACGTT	1 cut(s)	1126
Psp5II	RGGWCCY	3 cut(s)	392, 639, 921
Psp6I	CCWGG	4 cut(s)	25, 523, 641, 770
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	4 cut(s)	25, 523, 641, 770
PspN4I	GGNNCC	5 cut(s)	393, 394, 465, 640, 922
PspPI	GGNCC	4 cut(s)	392, 463, 639, 921
PspPPI	RGGWCCY	3 cut(s)	392, 639, 921
PstI	CTGCAG	1 cut(s)	559
RsaI	GTAC	1 cut(s)	683
RsaNI	GTAC	1 cut(s)	682
RseI	CAYNNNNRTG	1 cut(s)	526
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	2 cut(s)	291, 824
SatI	GCNGC	5 cut(s)	228, 357, 459, 462, 555
Sau3AI	GATC	4 cut(s)	404, 730, 975, 987
Sau96I	GGNCC	4 cut(s)	392, 463, 639, 921
ScrFI	CCNGG	5 cut(s)	27, 525, 619, 643, 772
SfaNI	GCATC	1 cut(s)	393
SfcI	CTRYAG	3 cut(s)	309, 496, 555
Sfr274I	CTCGAG	1 cut(s)	667
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	3 cut(s)	392, 639, 921
SlaI	CTCGAG	1 cut(s)	667
SmiMI	CAYNNNNRTG	1 cut(s)	526
SmlI	CTYRAG	2 cut(s)	667, 1012
SmoI	CTYRAG	2 cut(s)	667, 1012
Sse9I	AATT	1 cut(s)	339
SsiI	CCGC	3 cut(s)	14, 458, 461
SspMI	CTAG	3 cut(s)	122, 914, 1037
StyD4I	CCNGG	5 cut(s)	25, 523, 617, 641, 770
StyI	CCWWGG	1 cut(s)	886
TaaI	ACNGT	3 cut(s)	364, 1045, 1054
TaiI	ACGT	2 cut(s)	1129, 1142
TaqI	TCGA	4 cut(s)	194, 410, 668, 1120
TasI	AATT	1 cut(s)	339
TauI	GCSGC	2 cut(s)	461, 464
TfiI	GAWTC	2 cut(s)	659, 1005
Tru1I	TTAA	2 cut(s)	291, 824
Tru9I	TTAA	2 cut(s)	291, 824
TscAI	CASTG	4 cut(s)	351, 583, 846, 1092
TseI	GCWGC	3 cut(s)	227, 356, 554
TspDTI	ATGAA	2 cut(s)	228, 562
TspGWI	ACGGA	1 cut(s)	669
TspRI	CASTG	4 cut(s)	351, 583, 846, 1092
VpaK11BI	GGWCC	3 cut(s)	392, 639, 921
XhoI	CTCGAG	1 cut(s)	667
XmiI	GTMKAC	1 cut(s)	534
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	3 cut(s)	122, 914, 1037
ZraI	GACGTC	1 cut(s)	1140
Zsp2I	ATGCAT	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.