Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007818

Physical Location & Seq

Genomic Coordinates Forward (+)

7948579 .. 7951022

Gene Structure 2444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G13670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCTTCTTCTTCTCTACCTCTTTCTCTTCCGTTTCCACTCCGATCTCTTACTAGTACCACTCGATCTCTACCATTTCAATGTTCTCCTCTCTTTTTCTCTATTCCTTCTTCAATCGTTTGCTTCTCCACTCAAAATCCCGACCGCGAAGAGGTCCGGTGGCTCCGGGAAGAGCAGAGATGGATTCGCGAGGAGCAACGATGGATTCGTGAAGAACAGAGATGGATACGCGAACGTGAATCGCTTCTACAAGAGATTTCGGATCTACAGCTCAGAATTCAATCCCTAGAGTCACGAAATTCGCAATTGGGGAATTCTATTCCCGATACGATTTCGAATATCGCTGCTTTGCTTCAGGTTTTGAAGGAGAAGAATCGGATTTCTGAGAGTGGATTGAGCGCAACGCCGATGGTATTGGAGAGTACGAGAGAACAAATTGTTGAGGAGGTGGAAGAAGAAGAGAAGCGAGTGATTATTGCTGAAGAGAAAGTTAGGGTTTCGGAGCCGGTGAAGAAGATCAAGAGGAGGATATTGAAAGTTGGAAGCGAAGGCGACGATGTTCAAGCTTTGCAGGAAGCTCTGTTGAAATTAGGATTCTATTCGGGCGAAGAGGATATGGAGTTCTCGAGCTTTTCAAGTGGGACTGCAAGTGCTGTTAAGACTTGGCAAGCATCGCTTGGGGTCCGTGAGGATGGGGTAATGACAGCAGAGCTTCTTCAGAGGTTGTTCATGGATGAAGACGTAGAGACAGATAAGGATGAAGCAAGTACAATGAAGAAAGAGGAAGCTGGTAATGGGGCGGTATTTACTTCAGTGACACAAGTCCCTGAGAAGAAGCAATCAATCGTGAAAGATCAAAGTGACAGAGAAGTTGACGTTACTCAAAATCGGGTTTTTCTTCTTGGAGAAAACAGATGGGAAGATCCCTCCAGGCTCATTGGCAGGAACAAACCGGTAGACAGAAGTGAATCAACAAACACCAAAACGAGGTGCATCACTTGTCGAGGGGAGGGTCGATTGATGTGCCTAGAGTGCGATGGAACCGGTGAGCCAAACATTGAGCCGCAGTTCATGGAGTGGGTTGGTGAAGATACGAAGTGTCCGTACTGTGAAGGTCTTGGCTATACAGTTTGCGATGTCTGCGACGGCAAAAAAAACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0006139 GO:0006351 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009295 GO:0009314 GO:0009408 GO:0009416 GO:0009507 GO:0009508 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016020 GO:0016043 GO:0016070 GO:0016853 GO:0016860 GO:0016864 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031326 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032774 GO:0034357 GO:0034641 GO:0034645 GO:0034654 GO:0042644 GO:0042646 GO:0042651 GO:0042793 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055035 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0140096 GO:1901360 GO:1901362 GO:1901576 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PG_binding_1

Protein Analysis

387

Amino Acids

44.02

Weight (kDa)

4.84

Isoelectric Point (pI)

63.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PG_binding_1	PF01471	184 - 242	3.3e-12	Putative peptidoglycan binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007818)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13670 AT4G13670 AT4G13670 AT4G13670
fragaria_vesca	FvH4_4g00470 FvH4_4g00470
malus_domestica	MD04G1005000.v1.1
prunus_persica	Prupe.1G004900_v2.0.a1 Prupe.3G076100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0385901
rosa_laevigata	RLG00000010204
rosa_multiflora	Rmu_co7989456.1_g000001 Rmu_sc0007400.1_g000001 Rmu_sc0008728.1_g000006
rosa_roxburghii	Rroxscaffold_5G00333490
rosa_rugosa	Rorug03G0302300 Rorug03G0302400 Rorug03G0302500
rosa_samantha	Rh4AG007100 Rh4BG004700 Rh4BG004800 Rh4CG007700 Rh4DG006700
rosa_wichuraiana	Rw4G000340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1162
AccI	GTMKAC	1 cut(s)	957
AccII	CGCG	3 cut(s)	147, 189, 231
AciI	CCGC	3 cut(s)	145, 800, 1064
AclWI	GGATC	2 cut(s)	270, 917
AcsI	RAATTY	3 cut(s)	276, 298, 313
AcuI	CTGAAG	4 cut(s)	338, 501, 701, 795
AfaI	GTAC	4 cut(s)	58, 424, 769, 1106
AfiI	CCNNNNNNNGG	2 cut(s)	151, 987
AgeI	ACCGGT	2 cut(s)	952, 1043
AgsI	TTSAA	8 cut(s)	80, 114, 281, 364, 535, 563, 586, 636
AhlI	ACTAGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	929
AloI	GAACNNNNNNTCC	2 cut(s)	605, 637
AluBI	AGCT	6 cut(s)	271, 566, 578, 630, 712, 788
AluI	AGCT	6 cut(s)	271, 566, 578, 630, 712, 788
Alw26I	GTCTC	1 cut(s)	740
AlwI	GGATC	2 cut(s)	270, 917
Ama87I	CYCGRG	1 cut(s)	625
ApeKI	GCWGC	1 cut(s)	344
ApoI	RAATTY	3 cut(s)	276, 298, 313
AsiGI	ACCGGT	2 cut(s)	952, 1043
Asp700I	GAANNNNTTC	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	2 cut(s)	154, 682
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	520, 1058, 1097
AsuII	TTCGAA	1 cut(s)	335
AvaI	CYCGRG	1 cut(s)	625
AvaII	GGWCC	2 cut(s)	154, 682
BarI	GAAGNNNNNNTAC	2 cut(s)	1088, 1120
BbsI	GAAGAC	1 cut(s)	744
BbvI	GCAGC	1 cut(s)	331
BccI	CCATC	7 cut(s)	174, 195, 216, 403, 686, 909, 1031
BceAI	ACGGC	1 cut(s)	1162
BcgI	CGANNNNNNTGC	2 cut(s)	1005, 1039
BciT130I	CCWGG	1 cut(s)	931
BciVI	GTATCC	1 cut(s)	219
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	1 cut(s)	740
BcuI	ACTAGT	1 cut(s)	53
BfaI	CTAG	3 cut(s)	54, 287, 1028
BfmI	CTRYAG	1 cut(s)	266
BfuI	GTATCC	1 cut(s)	219
BisI	GCNGC	2 cut(s)	345, 1064
BlsI	GCNGC	2 cut(s)	346, 1065
Bme1390I	CCNGG	2 cut(s)	167, 931
Bme18I	GGWCC	2 cut(s)	154, 682
BmeT110I	CYCGRG	1 cut(s)	625
BmgT120I	GGNCC	2 cut(s)	154, 682
BmiI	GGNNCC	4 cut(s)	164, 504, 683, 1042
BmrFI	CCNGG	2 cut(s)	167, 931
BmsI	GCATC	2 cut(s)	680, 1002
BoxI	GACNNNNGTC	1 cut(s)	821
BpiI	GAAGAC	1 cut(s)	744
BpmI	CTGGAG	1 cut(s)	913
Bpu14I	TTCGAA	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	167
BsaWI	WCCGGW	3 cut(s)	156, 952, 1043
Bsc4I	CCNNNNNNNGG	2 cut(s)	151, 987
Bse118I	RCCGGY	3 cut(s)	505, 952, 1043
BseBI	CCWGG	1 cut(s)	931
BseGI	GGATG	3 cut(s)	697, 739, 763
BseLI	CCNNNNNNNGG	2 cut(s)	151, 987
BseMII	CTCAG	3 cut(s)	286, 375, 819
BseRI	GAGGAG	4 cut(s)	78, 206, 458, 538
BseXI	GCAGC	1 cut(s)	331
Bsh1236I	CGCG	3 cut(s)	147, 189, 231
Bsh1285I	CGRYCG	1 cut(s)	145
BshTI	ACCGGT	2 cut(s)	952, 1043
BsiEI	CGRYCG	1 cut(s)	145
BsiHKCI	CYCGRG	1 cut(s)	625
BsiSI	CCGG	5 cut(s)	157, 166, 506, 953, 1044
BslFI	GGGAC	2 cut(s)	655, 809
BslI	CCNNNNNNNGG	2 cut(s)	151, 987
BsmAI	GTCTC	1 cut(s)	740
BsmFI	GGGAC	2 cut(s)	655, 809
BsoBI	CYCGRG	1 cut(s)	625
Bsp119I	TTCGAA	1 cut(s)	335
Bsp143I	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
Bsp68I	TCGCGA	1 cut(s)	189
BspACI	CCGC	3 cut(s)	145, 800, 1064
BspCNI	CTCAG	3 cut(s)	285, 376, 820
BspFNI	CGCG	3 cut(s)	147, 189, 231
BspLI	GGNNCC	4 cut(s)	164, 504, 683, 1042
BspPI	GGATC	2 cut(s)	270, 917
BspQI	GCTCTTC	1 cut(s)	165
BspT104I	TTCGAA	1 cut(s)	335
BsrFI	RCCGGY	3 cut(s)	505, 952, 1043
BssAI	RCCGGY	3 cut(s)	505, 952, 1043
BssMI	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
Bst2UI	CCWGG	1 cut(s)	931
Bst4CI	ACNGT	2 cut(s)	1109, 1129
Bst6I	CTCTTC	6 cut(s)	33, 144, 165, 453, 477, 603
BstBI	TTCGAA	1 cut(s)	335
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	3 cut(s)	272, 384, 828
BstF5I	GGATG	3 cut(s)	697, 739, 763
BstFNI	CGCG	3 cut(s)	147, 189, 231
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	6 cut(s)	47, 68, 265, 519, 856, 925
BstMAI	GTCTC	1 cut(s)	740
BstMBI	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
BstMCI	CGRYCG	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	673, 1032, 1140
BstNI	CCWGG	1 cut(s)	931
BstPAI	GACNNNNGTC	1 cut(s)	821
BstSCI	CCNGG	2 cut(s)	165, 929
BstSFI	CTRYAG	1 cut(s)	266
BstUI	CGCG	3 cut(s)	147, 189, 231
BstV1I	GCAGC	1 cut(s)	331
BstV2I	GAAGAC	1 cut(s)	744
BstX2I	RGATCY	2 cut(s)	262, 922
BstYI	RGATCY	2 cut(s)	262, 922
BsuI	GTATCC	1 cut(s)	219
BtgZI	GCGATG	3 cut(s)	657, 1050, 1149
BtsCI	GGATG	3 cut(s)	697, 739, 763
BtsIMutI	CAGTG	1 cut(s)	819
BtuMI	TCGCGA	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	3 cut(s)	505, 952, 1043
Cfr13I	GGNCC	2 cut(s)	154, 682
Csp6I	GTAC	4 cut(s)	57, 423, 768, 1105
CspAI	ACCGGT	2 cut(s)	952, 1043
CviAII	CATG	2 cut(s)	730, 1072
CviQI	GTAC	4 cut(s)	57, 423, 768, 1105
DdeI	CTNAG	3 cut(s)	272, 384, 828
DpnI	GATC	6 cut(s)	46, 67, 264, 518, 855, 924
DpnII	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
Eam1104I	CTCTTC	6 cut(s)	33, 144, 165, 453, 477, 603
EarI	CTCTTC	6 cut(s)	33, 144, 165, 453, 477, 603
Eco47I	GGWCC	2 cut(s)	154, 682
Eco57I	CTGAAG	4 cut(s)	338, 501, 701, 795
Eco88I	CYCGRG	1 cut(s)	625
EcoRI	GAATTC	2 cut(s)	276, 313
EcoRII	CCWGG	1 cut(s)	929
FaeI	CATG	2 cut(s)	733, 1075
FaiI	YATR	5 cut(s)	617, 731, 1073, 1125, 1162
FalI	AAGNNNNNCTT	2 cut(s)	660, 692
FaqI	GGGAC	2 cut(s)	655, 809
FatI	CATG	2 cut(s)	729, 1071
FblI	GTMKAC	1 cut(s)	957
Fnu4HI	GCNGC	2 cut(s)	345, 1064
FokI	GGATG	3 cut(s)	704, 746, 770
Fsp4HI	GCNGC	2 cut(s)	345, 1064
FspBI	CTAG	3 cut(s)	54, 287, 1028
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	2 cut(s)	345, 1064
GsuI	CTGGAG	1 cut(s)	913
HapII	CCGG	5 cut(s)	157, 166, 506, 953, 1044
HhaI	GCGC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	733, 1075
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	874
HindII	GTYRAC	1 cut(s)	874
HindIII	AAGCTT	1 cut(s)	564
HinfI	GANTC	7 cut(s)	184, 205, 239, 290, 373, 594, 968
HpaII	CCGG	5 cut(s)	157, 166, 506, 953, 1044
HphI	GGTGA	3 cut(s)	520, 1058, 1097
Hpy166II	GTNNAC	2 cut(s)	874, 958
Hpy188I	TCNGA	7 cut(s)	44, 262, 275, 378, 385, 502, 720
Hpy188III	TCNNGA	8 cut(s)	140, 188, 209, 294, 323, 520, 625, 847
Hpy8I	GTNNAC	2 cut(s)	874, 958
Hpy99I	CGWCG	2 cut(s)	557, 1148
HpyAV	CCTTC	4 cut(s)	117, 358, 542, 1106
HpyCH4III	ACNGT	2 cut(s)	1109, 1129
HpyCH4IV	ACGT	3 cut(s)	235, 741, 876
HpyCH4V	TGCA	3 cut(s)	571, 647, 993
HpyF10VI	GCNNNNNNNGC	3 cut(s)	673, 1032, 1140
HpyF3I	CTNAG	3 cut(s)	272, 384, 828
HpySE526I	ACGT	3 cut(s)	235, 741, 876
Hsp92II	CATG	2 cut(s)	733, 1075
HspAI	GCGC	1 cut(s)	399
Kzo9I	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
LguI	GCTCTTC	1 cut(s)	165
LmnI	GCTCC	3 cut(s)	168, 193, 502
Lsp1109I	GCAGC	1 cut(s)	331
LweI	GCATC	2 cut(s)	680, 1002
MaeI	CTAG	3 cut(s)	54, 287, 1028
MaeII	ACGT	3 cut(s)	235, 741, 876
MaeIII	GTNAC	4 cut(s)	291, 814, 860, 877
MalI	GATC	6 cut(s)	46, 67, 264, 518, 855, 924
MboI	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	2 cut(s)	262, 922
MluCI	AATT	6 cut(s)	276, 298, 305, 313, 435, 587
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	1 cut(s)	520
MroXI	GAANNNNTTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	657
MslI	CAYNNNNRTG	1 cut(s)	79
MspI	CCGG	5 cut(s)	157, 166, 506, 953, 1044
MspR9I	CCNGG	2 cut(s)	167, 931
MunI	CAATTG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	931
MvnI	CGCG	3 cut(s)	147, 189, 231
MwoI	GCNNNNNNNGC	3 cut(s)	673, 1032, 1140
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
NlaIII	CATG	2 cut(s)	733, 1075
NlaIV	GGNNCC	4 cut(s)	164, 504, 683, 1042
NmuCI	GTSAC	3 cut(s)	291, 814, 860
NruI	TCGCGA	1 cut(s)	189
NspV	TTCGAA	1 cut(s)	335
PaeR7I	CTCGAG	1 cut(s)	625
PciSI	GCTCTTC	1 cut(s)	165
PcsI	WCGNNNNNNNCGW	2 cut(s)	205, 1100
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	6 cut(s)	184, 205, 239, 373, 594, 968
PfoI	TCCNGGA	1 cut(s)	165
PinAI	ACCGGT	2 cut(s)	952, 1043
PkrI	GCNGC	2 cut(s)	346, 1065
PleI	GAGTC	1 cut(s)	298
PpsI	GAGTC	1 cut(s)	298
PshAI	GACNNNNGTC	1 cut(s)	821
PsiI	TTATAA	1 cut(s)	1162
Psp6I	CCWGG	1 cut(s)	929
PspGI	CCWGG	1 cut(s)	929
PspN4I	GGNNCC	4 cut(s)	164, 504, 683, 1042
PspPI	GGNCC	2 cut(s)	154, 682
PsuI	RGATCY	2 cut(s)	262, 922
RruI	TCGCGA	1 cut(s)	189
RsaI	GTAC	4 cut(s)	58, 424, 769, 1106
RsaNI	GTAC	4 cut(s)	57, 423, 768, 1105
RseI	CAYNNNNRTG	1 cut(s)	79
SapI	GCTCTTC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	2 cut(s)	345, 1064
Sau3AI	GATC	6 cut(s)	44, 65, 262, 516, 853, 922
Sau96I	GGNCC	2 cut(s)	154, 682
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	167, 931
SfaNI	GCATC	2 cut(s)	680, 1002
SfcI	CTRYAG	1 cut(s)	266
Sfr274I	CTCGAG	1 cut(s)	625
SfuI	TTCGAA	1 cut(s)	335
SinI	GGWCC	2 cut(s)	154, 682
SlaI	CTCGAG	1 cut(s)	625
SmiMI	CAYNNNNRTG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
SpeI	ACTAGT	1 cut(s)	53
Sse9I	AATT	6 cut(s)	276, 298, 305, 313, 435, 587
SsiI	CCGC	3 cut(s)	145, 800, 1064
SspMI	CTAG	3 cut(s)	54, 287, 1028
StyD4I	CCNGG	2 cut(s)	165, 929
TaaI	ACNGT	2 cut(s)	1109, 1129
TaiI	ACGT	3 cut(s)	238, 744, 879
TaqI	TCGA	5 cut(s)	64, 335, 626, 1003, 1015
TasI	AATT	6 cut(s)	276, 298, 305, 313, 435, 587
TatI	WGTACW	1 cut(s)	767
TauI	GCSGC	1 cut(s)	1066
TfiI	GAWTC	6 cut(s)	184, 205, 239, 373, 594, 968
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	819
TseFI	GTSAC	3 cut(s)	291, 814, 860
TseI	GCWGC	1 cut(s)	344
Tsp45I	GTSAC	3 cut(s)	291, 814, 860
TspDTI	ATGAA	5 cut(s)	718, 750, 774, 788, 1060
TspGWI	ACGGA	3 cut(s)	21, 674, 1092
TspRI	CASTG	1 cut(s)	819
VpaK11BI	GGWCC	2 cut(s)	154, 682
XapI	RAATTY	3 cut(s)	276, 298, 313
XhoI	CTCGAG	1 cut(s)	625
XmiI	GTMKAC	1 cut(s)	957
XmnI	GAANNNNTTC	1 cut(s)	243
XspI	CTAG	3 cut(s)	54, 287, 1028

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.